Wall clock time and date at job start Thu Apr 9 2020 12:10:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42896 * 1 3 3 C 1.36061 * 116.99725 * 2 1 4 4 C 1.38666 * 120.79682 * 359.71040 * 3 2 1 5 5 N 1.32445 * 119.20127 * 179.74630 * 4 3 2 6 6 C 1.32444 * 120.93069 * 0.56781 * 5 4 3 7 7 N 1.38547 * 119.13574 * 179.70131 * 6 5 4 8 8 C 1.46499 * 120.00400 * 179.97438 * 7 6 5 9 9 C 1.36974 * 119.99655 * 359.97438 * 7 6 5 10 10 H 1.07995 * 119.99697 * 22.50407 * 9 7 6 11 11 C 1.38801 * 119.99848 * 202.49702 * 9 7 6 12 12 N 1.31569 * 120.00062 * 11.10487 * 11 9 7 13 13 Si 1.86797 * 119.99961 * 191.09871 * 11 9 7 14 14 H 1.48497 * 109.47198 * 0.02562 * 13 11 9 15 15 H 1.48499 * 109.47280 * 120.00570 * 13 11 9 16 16 H 1.48500 * 109.47164 * 240.00138 * 13 11 9 17 17 N 1.32533 * 121.73736 * 359.68830 * 6 5 4 18 18 C 1.32633 * 120.70091 * 0.02562 * 17 6 5 19 19 O 1.35600 * 120.49285 * 180.02562 * 18 17 6 20 20 C 1.42899 * 116.99623 * 359.97438 * 19 18 17 21 21 H 1.09002 * 109.47051 * 180.02562 * 1 2 3 22 22 H 1.09003 * 109.47611 * 300.00757 * 1 2 3 23 23 H 1.09003 * 109.47000 * 60.00510 * 1 2 3 24 24 H 1.08004 * 120.40245 * 0.02562 * 4 3 2 25 25 H 1.09002 * 109.47046 * 93.89241 * 8 7 6 26 26 H 1.09004 * 109.47612 * 213.89698 * 8 7 6 27 27 H 1.09002 * 109.47110 * 333.89526 * 8 7 6 28 28 H 0.96996 * 119.99952 * 179.97438 * 12 11 9 29 29 H 1.09008 * 109.47126 * 179.97438 * 20 19 18 30 30 H 1.08995 * 109.47223 * 300.00087 * 20 19 18 31 31 H 1.09003 * 109.47421 * 60.00213 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0466 1.2123 0.0000 4 6 1.3076 2.3856 -0.0060 5 7 1.9414 3.5486 -0.0007 6 6 3.2647 3.6026 -0.0011 7 7 3.8893 4.8393 -0.0017 8 6 5.3520 4.9213 -0.0015 9 6 3.1392 5.9854 -0.0025 10 1 2.1204 5.9641 0.3553 11 6 3.6884 7.1740 -0.4631 12 7 4.8410 7.1638 -1.0976 13 14 2.7911 8.7881 -0.1823 14 1 1.5256 8.5300 0.5506 15 1 3.6490 9.6987 0.6176 16 1 2.4856 9.4189 -1.4915 17 7 4.0073 2.5049 -0.0005 18 6 3.4421 1.3050 -0.0002 19 8 4.2060 0.1846 0.0009 20 6 5.6234 0.3659 0.0010 21 1 -0.3633 -1.0277 0.0005 22 1 -0.3634 0.5139 0.8899 23 1 -0.3633 0.5138 -0.8901 24 1 0.2281 2.3517 -0.0104 25 1 5.7110 5.0107 -1.0268 26 1 5.6671 5.7937 0.5711 27 1 5.7664 4.0205 0.4513 28 1 5.2246 7.9944 -1.4197 29 1 6.1142 -0.6074 0.0023 30 1 5.9188 0.9210 -0.8893 31 1 5.9186 0.9224 0.8906 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001166798593.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 12:10:01 Heat of formation + Delta-G solvation = -14.490775 kcal Electronic energy + Delta-G solvation = -17192.898431 eV Core-core repulsion = 14283.101279 eV Total energy + Delta-G solvation = -2909.797152 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 239.106 amu Computer time = 1.05 seconds Orbital eigenvalues (eV) -41.97194 -39.45481 -39.24743 -37.39840 -34.04411 -33.56076 -30.86717 -28.87532 -27.99316 -27.97990 -25.93009 -24.26309 -23.01993 -20.11286 -19.18801 -18.61443 -18.25219 -17.44076 -17.29338 -16.21780 -16.07604 -15.69997 -15.55892 -15.30337 -14.88362 -14.38019 -14.10677 -13.33136 -13.08981 -12.89976 -12.73187 -12.67184 -12.59576 -12.38893 -12.15377 -12.04529 -11.81372 -11.21968 -10.97353 -10.11698 -9.87629 -8.59058 -8.28951 -5.82567 0.41022 0.51447 1.44173 1.47119 1.59054 1.98691 2.23524 2.56582 2.74654 2.83247 3.28403 3.48888 4.02288 4.07791 4.27918 4.44521 4.50589 4.55238 4.62615 4.71883 4.76427 4.85271 4.96104 5.24455 5.30172 5.49479 5.83107 6.06594 6.18804 6.53538 6.71115 7.14157 7.37842 7.88162 8.67684 Molecular weight = 239.11amu Principal moments of inertia in cm(-1) A = 0.031009 B = 0.007336 C = 0.006023 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 902.746947 B = 3815.770380 C = 4647.509528 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.020 3.980 2 O -0.325 6.325 3 C -0.116 4.116 4 C 0.147 3.853 5 N -0.586 5.586 6 C 0.502 3.498 7 N -0.421 5.421 8 C 0.153 3.847 9 C -0.311 4.311 10 H 0.099 0.901 11 C -0.015 4.015 12 N -0.903 5.903 13 Si 1.003 2.997 14 H -0.263 1.263 15 H -0.272 1.272 16 H -0.278 1.278 17 N -0.622 5.622 18 C 0.372 3.628 19 O -0.307 6.307 20 C 0.038 3.962 21 H 0.120 0.880 22 H 0.059 0.941 23 H 0.058 0.942 24 H 0.197 0.803 25 H 0.040 0.960 26 H 0.055 0.945 27 H 0.053 0.947 28 H 0.273 0.727 29 H 0.131 0.869 30 H 0.049 0.951 31 H 0.052 0.948 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.857 -9.426 2.237 10.428 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.075 4.075 2 O -0.239 6.239 3 C -0.171 4.171 4 C -0.022 4.022 5 N -0.315 5.315 6 C 0.148 3.852 7 N -0.119 5.119 8 C 0.009 3.991 9 C -0.441 4.441 10 H 0.116 0.884 11 C -0.216 4.216 12 N -0.540 5.540 13 Si 0.826 3.174 14 H -0.187 1.187 15 H -0.197 1.197 16 H -0.203 1.203 17 N -0.366 5.366 18 C 0.181 3.819 19 O -0.212 6.212 20 C -0.057 4.057 21 H 0.138 0.862 22 H 0.078 0.922 23 H 0.076 0.924 24 H 0.214 0.786 25 H 0.058 0.942 26 H 0.073 0.927 27 H 0.072 0.928 28 H 0.083 0.917 29 H 0.149 0.851 30 H 0.068 0.932 31 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -3.047 -8.621 2.154 9.394 hybrid contribution -0.396 0.319 -0.131 0.525 sum -3.444 -8.303 2.023 9.214 Atomic orbital electron populations 1.23254 0.77262 1.05293 1.01718 1.86030 1.22447 1.24035 1.91343 1.19062 0.89872 0.87774 1.20438 1.23287 1.01167 0.84945 0.92777 1.67856 1.08792 1.28884 1.25983 1.19129 0.85287 0.85622 0.95119 1.42422 1.05820 1.00335 1.63283 1.21167 0.78256 0.99029 1.00640 1.19982 0.98846 0.84725 1.40501 0.88375 1.26315 0.97618 1.02976 0.94735 1.70212 1.19330 1.29054 1.35447 0.84719 0.78314 0.76317 0.78086 1.18657 1.19682 1.20327 1.67408 1.40112 0.97101 1.32009 1.19314 0.86916 0.85107 0.90604 1.86269 1.20985 1.26370 1.87530 1.23047 0.76352 1.04390 1.01904 0.86177 0.92210 0.92355 0.78645 0.94170 0.92670 0.92801 0.91740 0.85070 0.93246 0.92951 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.42 9.84 113.37 1.12 1.53 16 2 O -0.33 -10.84 10.36 -82.04 -0.85 -11.69 16 3 C -0.12 -4.53 6.75 22.77 0.15 -4.38 16 4 C 0.15 5.67 10.30 84.70 0.87 6.54 16 5 N -0.59 -28.18 9.22 -197.71 -1.82 -30.00 16 6 C 0.50 25.71 8.14 261.42 2.13 27.83 16 7 N -0.42 -22.71 3.11 -547.64 -1.71 -24.42 16 8 C 0.15 7.58 8.72 127.77 1.11 8.70 16 9 C -0.31 -17.12 9.29 84.02 0.78 -16.34 16 10 H 0.10 5.45 7.31 -2.91 -0.02 5.43 16 11 C -0.01 -0.78 5.13 84.87 0.44 -0.34 16 12 N -0.90 -48.49 10.58 21.65 0.23 -48.26 16 13 Si 1.00 41.32 29.57 68.60 2.03 43.35 16 14 H -0.26 -10.56 7.11 99.48 0.71 -9.85 16 15 H -0.27 -10.73 7.11 99.48 0.71 -10.03 16 16 H -0.28 -11.23 7.11 99.48 0.71 -10.53 16 17 N -0.62 -29.20 7.99 -310.40 -2.48 -31.68 16 18 C 0.37 15.85 7.54 84.96 0.64 16.49 16 19 O -0.31 -11.46 10.33 -76.89 -0.79 -12.25 16 20 C 0.04 1.10 10.41 113.37 1.18 2.28 16 21 H 0.12 1.85 8.14 -2.39 -0.02 1.83 16 22 H 0.06 1.14 7.72 -2.39 -0.02 1.12 16 23 H 0.06 1.13 7.70 -2.39 -0.02 1.11 16 24 H 0.20 5.69 6.45 -2.91 -0.02 5.67 16 25 H 0.04 2.10 7.44 -2.39 -0.02 2.08 16 26 H 0.05 2.77 7.17 -2.39 -0.02 2.76 16 27 H 0.05 2.45 7.21 -2.39 -0.02 2.43 16 28 H 0.27 13.69 8.31 -92.71 -0.77 12.92 16 29 H 0.13 2.66 8.14 -2.38 -0.02 2.64 16 30 H 0.05 1.52 8.12 -2.39 -0.02 1.50 16 31 H 0.05 1.56 8.12 -2.39 -0.02 1.54 16 Total: -1.00 -66.21 270.41 4.17 -62.04 By element: Atomic # 1 Polarization: 9.47 SS G_CDS: 1.14 Total: 10.62 kcal Atomic # 6 Polarization: 33.89 SS G_CDS: 8.42 Total: 42.31 kcal Atomic # 7 Polarization: -128.59 SS G_CDS: -5.78 Total: -134.36 kcal Atomic # 8 Polarization: -22.30 SS G_CDS: -1.64 Total: -23.95 kcal Atomic # 14 Polarization: 41.32 SS G_CDS: 2.03 Total: 43.35 kcal Total: -66.21 4.17 -62.04 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001166798593.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 47.546 kcal (2) G-P(sol) polarization free energy of solvation -66.208 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -18.662 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.171 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.037 kcal (6) G-S(sol) free energy of system = (1) + (5) -14.491 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.05 seconds