Wall clock time and date at job start Thu Apr 9 2020 12:10:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31519 * 1 3 3 Si 1.86800 * 120.00005 * 2 1 4 4 H 1.48506 * 109.47116 * 239.99922 * 3 2 1 5 5 H 1.48490 * 109.47381 * 0.02562 * 3 2 1 6 6 H 1.48503 * 109.46756 * 120.00523 * 3 2 1 7 7 C 1.37876 * 119.99563 * 180.02562 * 2 1 3 8 8 H 1.08006 * 119.99652 * 179.97438 * 7 2 1 9 9 C 1.50697 * 120.00428 * 359.97438 * 7 2 1 10 10 C 1.53001 * 109.47291 * 179.97438 * 9 7 2 11 11 C 1.53000 * 109.46886 * 179.97438 * 10 9 7 12 12 N 1.46499 * 109.46840 * 180.02562 * 11 10 9 13 13 C 1.39458 * 120.00064 * 179.97438 * 12 11 10 14 14 N 1.32298 * 119.63719 * 359.73158 * 13 12 11 15 15 C 1.32005 * 121.71903 * 179.75121 * 14 13 12 16 16 C 1.38648 * 120.79207 * 0.52251 * 15 14 13 17 17 N 1.40034 * 120.39864 * 179.76263 * 16 15 14 18 18 C 1.39380 * 119.20366 * 359.74466 * 16 15 14 19 19 C 1.38460 * 118.42673 * 359.97438 * 18 16 15 20 20 F 1.35097 * 120.43312 * 180.02562 * 19 18 16 21 21 H 0.97000 * 119.99425 * 359.97438 * 1 2 3 22 22 H 1.09001 * 109.46613 * 59.99978 * 9 7 2 23 23 H 1.09002 * 109.47120 * 300.00329 * 9 7 2 24 24 H 1.09001 * 109.46652 * 60.00253 * 10 9 7 25 25 H 1.08992 * 109.47514 * 300.00342 * 10 9 7 26 26 H 1.09002 * 109.47398 * 300.00496 * 11 10 9 27 27 H 1.09001 * 109.47194 * 60.00677 * 11 10 9 28 28 H 0.97000 * 120.00420 * 0.02562 * 12 11 10 29 29 H 1.07991 * 119.60170 * 180.24221 * 15 14 13 30 30 H 0.96993 * 120.00297 * 179.97438 * 17 16 15 31 31 H 0.97004 * 119.99815 * 359.97438 * 17 16 15 32 32 H 1.08004 * 120.78726 * 180.02562 * 18 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.1030 1.6964 -1.2125 5 1 1.2843 2.7464 0.0006 6 1 3.1030 1.6963 1.2125 7 6 2.0045 -1.1941 -0.0005 8 1 3.0845 -1.1941 -0.0010 9 6 1.2510 -2.4992 -0.0005 10 6 2.2452 -3.6621 -0.0018 11 6 1.4801 -4.9871 -0.0012 12 7 2.4321 -6.1006 -0.0018 13 6 1.9672 -7.4154 -0.0008 14 7 0.6650 -7.6489 0.0060 15 6 0.1800 -8.8767 0.0023 16 6 1.0270 -9.9744 0.0019 17 7 0.5036 -11.2732 0.0030 18 6 2.4057 -9.7696 0.0000 19 6 2.8787 -8.4683 -0.0020 20 9 4.2073 -8.2231 -0.0044 21 1 -0.4849 0.8401 0.0004 22 1 0.6240 -2.5566 -0.8903 23 1 0.6246 -2.5571 0.8897 24 1 2.8725 -3.6048 0.8878 25 1 2.8712 -3.6040 -0.8921 26 1 0.8543 -5.0449 0.8894 27 1 0.8525 -5.0447 -0.8905 28 1 3.3858 -5.9235 -0.0021 29 1 -0.8893 -9.0278 0.0042 30 1 1.1014 -12.0370 0.0023 31 1 -0.4569 -11.4090 0.0044 32 1 3.0888 -10.6061 -0.0008 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001168426839.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 12:10:07 Heat of formation + Delta-G solvation = -42.716243 kcal Electronic energy + Delta-G solvation = -15953.652408 eV Core-core repulsion = 13055.004097 eV Total energy + Delta-G solvation = -2898.648311 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 239.113 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -49.85837 -41.05913 -37.81245 -36.00596 -34.88453 -33.06404 -32.34735 -29.44486 -27.63169 -25.40322 -24.12484 -23.08298 -22.09669 -19.07657 -18.71248 -18.46054 -18.21919 -16.92203 -16.57684 -16.50088 -16.15363 -16.06361 -15.45405 -15.33409 -14.75280 -14.25622 -13.97391 -13.74070 -13.73764 -13.36453 -12.81071 -12.53275 -12.38791 -12.34005 -11.62513 -11.48452 -11.19692 -10.63419 -10.59058 -10.54315 -9.91586 -8.19139 -7.89914 -6.30674 0.09494 0.53198 1.41078 1.44495 1.52395 2.26568 2.43268 2.84148 2.92447 3.13973 3.25265 3.62653 3.90185 4.08585 4.26933 4.27817 4.57132 4.62571 4.66736 4.97143 5.01130 5.07043 5.17318 5.45517 5.52368 5.72331 5.84434 6.13262 6.25891 6.45114 6.54117 6.85715 7.06652 7.27725 7.38489 8.92779 Molecular weight = 239.11amu Principal moments of inertia in cm(-1) A = 0.053004 B = 0.003887 C = 0.003634 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 528.134173 B = 7201.516066 C = 7703.900567 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.933 5.933 2 C -0.001 4.001 3 Si 0.967 3.033 4 H -0.266 1.266 5 H -0.283 1.283 6 H -0.267 1.267 7 C -0.546 4.546 8 H 0.062 0.938 9 C 0.028 3.972 10 C -0.105 4.105 11 C 0.156 3.844 12 N -0.729 5.729 13 C 0.310 3.690 14 N -0.507 5.507 15 C 0.059 3.941 16 C 0.144 3.856 17 N -0.857 5.857 18 C -0.146 4.146 19 C 0.011 3.989 20 F -0.140 7.140 21 H 0.264 0.736 22 H -0.006 1.006 23 H -0.006 1.006 24 H 0.059 0.941 25 H 0.059 0.941 26 H 0.046 0.954 27 H 0.046 0.954 28 H 0.411 0.589 29 H 0.181 0.819 30 H 0.409 0.591 31 H 0.412 0.588 32 H 0.169 0.831 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.117 -23.828 -0.008 24.031 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.573 5.573 2 C -0.199 4.199 3 Si 0.791 3.209 4 H -0.191 1.191 5 H -0.208 1.208 6 H -0.191 1.191 7 C -0.584 4.584 8 H 0.080 0.920 9 C -0.009 4.009 10 C -0.143 4.143 11 C 0.032 3.968 12 N -0.366 5.366 13 C 0.073 3.927 14 N -0.224 5.224 15 C -0.103 4.103 16 C 0.035 3.965 17 N -0.401 5.401 18 C -0.177 4.177 19 C -0.017 4.017 20 F -0.119 7.119 21 H 0.073 0.927 22 H 0.012 0.988 23 H 0.012 0.988 24 H 0.078 0.922 25 H 0.078 0.922 26 H 0.064 0.936 27 H 0.064 0.936 28 H 0.248 0.752 29 H 0.198 0.802 30 H 0.240 0.760 31 H 0.242 0.758 32 H 0.186 0.814 Dipole moment (debyes) X Y Z Total from point charges 2.303 -22.834 -0.001 22.950 hybrid contribution 1.105 0.232 -0.001 1.129 sum 3.407 -22.603 -0.002 22.858 Atomic orbital electron populations 1.70102 1.07837 1.27888 1.51490 1.26008 0.95797 1.03446 0.94667 0.85470 0.78235 0.77949 0.79202 1.19130 1.20813 1.19142 1.21661 0.93628 0.92259 1.50821 0.91982 1.18894 0.94266 0.92614 0.95146 1.21610 0.98593 0.92813 1.01310 1.20985 0.91231 0.84452 1.00165 1.44483 1.08948 1.01162 1.81990 1.18468 0.88983 0.85823 0.99451 1.67162 1.12112 1.25431 1.17652 1.22489 1.01024 0.85003 1.01809 1.18316 0.91368 0.88223 0.98609 1.42158 1.10671 1.02172 1.85064 1.21005 0.95398 0.95248 1.06082 1.17854 0.77344 0.93662 1.12801 1.91437 1.30729 1.95055 1.94690 0.92720 0.98765 0.98760 0.92239 0.92223 0.93592 0.93583 0.75243 0.80200 0.76046 0.75758 0.81389 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -57.82 13.29 21.45 0.28 -57.54 16 2 C 0.00 -0.08 5.46 84.65 0.46 0.38 16 3 Si 0.97 44.85 29.54 68.60 2.03 46.87 16 4 H -0.27 -11.84 7.11 99.48 0.71 -11.13 16 5 H -0.28 -12.80 7.11 99.48 0.71 -12.09 16 6 H -0.27 -11.84 7.11 99.48 0.71 -11.14 16 7 C -0.55 -31.68 9.11 25.60 0.23 -31.44 16 8 H 0.06 3.42 7.74 -2.91 -0.02 3.40 16 9 C 0.03 1.55 4.97 29.85 0.15 1.69 16 10 C -0.11 -4.47 5.27 30.59 0.16 -4.31 16 11 C 0.16 5.98 5.70 86.38 0.49 6.48 16 12 N -0.73 -24.27 5.72 -344.63 -1.97 -26.24 16 13 C 0.31 9.71 7.49 132.97 1.00 10.71 16 14 N -0.51 -15.65 9.56 -192.36 -1.84 -17.49 16 15 C 0.06 1.32 11.05 84.76 0.94 2.25 16 16 C 0.14 2.50 6.79 38.20 0.26 2.76 16 17 N -0.86 -7.37 9.11 -51.02 -0.46 -7.84 16 18 C -0.15 -2.85 10.02 22.60 0.23 -2.62 16 19 C 0.01 0.28 7.34 22.57 0.17 0.45 16 20 F -0.14 -3.76 16.64 44.97 0.75 -3.01 16 21 H 0.26 15.35 8.31 -92.71 -0.77 14.58 16 22 H -0.01 -0.35 8.14 -2.39 -0.02 -0.37 16 23 H -0.01 -0.35 8.14 -2.39 -0.02 -0.37 16 24 H 0.06 2.43 8.14 -2.39 -0.02 2.41 16 25 H 0.06 2.44 8.14 -2.39 -0.02 2.42 16 26 H 0.05 1.85 8.14 -2.39 -0.02 1.84 16 27 H 0.05 1.86 8.14 -2.39 -0.02 1.84 16 28 H 0.41 12.49 7.94 -92.71 -0.74 11.75 16 29 H 0.18 2.88 8.06 -2.92 -0.02 2.85 16 30 H 0.41 1.91 8.86 -92.71 -0.82 1.09 16 31 H 0.41 2.00 8.86 -92.71 -0.82 1.18 16 32 H 0.17 2.22 8.06 -2.91 -0.02 2.20 16 Total: -1.00 -70.08 285.05 1.65 -68.42 By element: Atomic # 1 Polarization: 11.68 SS G_CDS: -1.21 Total: 10.46 kcal Atomic # 6 Polarization: -17.73 SS G_CDS: 4.08 Total: -13.65 kcal Atomic # 7 Polarization: -105.11 SS G_CDS: -3.99 Total: -109.10 kcal Atomic # 9 Polarization: -3.76 SS G_CDS: 0.75 Total: -3.01 kcal Atomic # 14 Polarization: 44.85 SS G_CDS: 2.03 Total: 46.87 kcal Total: -70.08 1.65 -68.42 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001168426839.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 25.708 kcal (2) G-P(sol) polarization free energy of solvation -70.076 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -44.368 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.652 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.424 kcal (6) G-S(sol) free energy of system = (1) + (5) -42.716 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds