Wall clock time and date at job start Thu Apr 9 2020 12:10:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31616 * 1 3 3 Si 1.86800 * 120.00273 * 2 1 4 4 H 1.48499 * 109.47478 * 270.00124 * 3 2 1 5 5 H 1.48496 * 109.46927 * 29.99914 * 3 2 1 6 6 H 1.48502 * 109.47236 * 150.00165 * 3 2 1 7 7 C 1.38816 * 120.00123 * 180.02562 * 2 1 3 8 8 H 1.07996 * 119.99821 * 359.97438 * 7 2 1 9 9 N 1.36932 * 120.00249 * 180.02562 * 7 2 1 10 10 C 1.46501 * 119.99985 * 179.97438 * 9 7 2 11 11 C 1.53005 * 109.46976 * 179.97438 * 10 9 7 12 12 C 1.53004 * 109.46990 * 179.97438 * 11 10 9 13 13 N 1.46500 * 109.46966 * 180.02562 * 12 11 10 14 14 C 1.34778 * 119.99592 * 180.02562 * 13 12 11 15 15 O 1.21546 * 120.00331 * 359.97438 * 14 13 12 16 16 C 1.47871 * 119.99736 * 179.97438 * 14 13 12 17 17 N 1.34549 * 126.05131 * 179.97438 * 16 14 13 18 18 C 1.30862 * 107.27315 * 180.02562 * 17 16 14 19 19 N 1.34584 * 107.62652 * 0.02562 * 18 17 16 20 20 H 0.97000 * 125.75481 * 179.73959 * 19 18 17 21 21 N 1.28852 * 108.50061 * 359.97438 * 19 18 17 22 22 H 0.96999 * 119.99735 * 0.02562 * 1 2 3 23 23 H 0.97003 * 119.99966 * 359.97438 * 9 7 2 24 24 H 1.08993 * 109.47243 * 59.99905 * 10 9 7 25 25 H 1.08997 * 109.47241 * 299.99330 * 10 9 7 26 26 H 1.08996 * 109.47391 * 60.00064 * 11 10 9 27 27 H 1.09001 * 109.47395 * 299.99939 * 11 10 9 28 28 H 1.08996 * 109.46857 * 59.99914 * 12 11 10 29 29 H 1.09001 * 109.47147 * 300.00268 * 12 11 10 30 30 H 0.97001 * 120.00109 * 359.97438 * 13 12 11 31 31 H 1.07997 * 126.19071 * 179.97438 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.4978 2.0465 -1.4000 5 1 1.4477 2.6526 0.7000 6 1 3.5478 1.4401 0.7000 7 6 2.0103 -1.2022 -0.0005 8 1 1.4703 -2.1374 -0.0005 9 7 3.3796 -1.2022 0.0000 10 6 4.1121 -2.4710 0.0000 11 6 5.6163 -2.1914 0.0000 12 6 6.3813 -3.5164 0.0006 13 7 7.8217 -3.2487 0.0013 14 6 8.6974 -4.2732 0.0014 15 8 8.2923 -5.4192 0.0014 16 6 10.1512 -4.0030 0.0014 17 7 11.1285 -4.9279 0.0020 18 6 12.2697 -4.2873 0.0024 19 7 11.9972 -2.9694 0.0026 20 1 12.6533 -2.2550 0.0065 21 7 10.7178 -2.8163 0.0018 22 1 -0.4850 0.8401 -0.0004 23 1 3.8646 -0.3621 0.0004 24 1 3.8491 -3.0423 -0.8901 25 1 3.8485 -3.0427 0.8898 26 1 5.8797 -1.6198 0.8899 27 1 5.8797 -1.6198 -0.8900 28 1 6.1180 -4.0883 -0.8891 29 1 6.1179 -4.0876 0.8908 30 1 8.1450 -2.3342 0.0008 31 1 13.2524 -4.7352 0.0033 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001168781584.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 12:10:13 Heat of formation + Delta-G solvation = 63.727205 kcal Electronic energy + Delta-G solvation = -15825.967318 eV Core-core repulsion = 12951.854703 eV Total energy + Delta-G solvation = -2874.112615 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 239.112 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -43.85573 -39.54534 -36.19712 -34.53808 -33.79155 -32.38972 -31.61035 -29.97145 -26.17908 -24.26711 -23.27823 -22.07986 -21.31347 -20.48906 -19.27857 -17.78372 -17.25728 -16.75997 -16.10256 -15.60121 -15.17166 -14.58428 -14.29228 -14.10275 -13.49023 -12.80579 -12.62035 -12.55451 -12.01408 -11.19405 -11.12344 -11.02983 -10.95686 -10.81007 -10.70067 -10.31876 -10.14824 -10.13450 -9.58652 -9.16839 -8.89347 -7.23475 -5.75969 -3.11978 0.98444 1.77588 2.18848 2.74820 3.16172 3.37344 3.39736 3.45294 3.93694 4.07790 4.52270 4.59502 4.93339 5.21390 5.51005 5.53850 5.54624 5.76076 5.84263 5.92502 5.96563 6.14561 6.23954 6.31942 6.70293 6.73376 7.22184 7.62115 8.00086 8.01131 8.42944 9.21765 9.93835 10.13344 11.42473 Molecular weight = 239.11amu Principal moments of inertia in cm(-1) A = 0.050142 B = 0.003702 C = 0.003459 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 558.278521 B = 7560.896430 C = 8093.428286 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.934 5.934 2 C 0.003 3.997 3 Si 0.886 3.114 4 H -0.284 1.284 5 H -0.291 1.291 6 H -0.277 1.277 7 C -0.245 4.245 8 H 0.091 0.909 9 N -0.757 5.757 10 C 0.160 3.840 11 C -0.142 4.142 12 C 0.123 3.877 13 N -0.710 5.710 14 C 0.610 3.390 15 O -0.509 6.509 16 C 0.155 3.845 17 N -0.462 5.462 18 C 0.196 3.804 19 N -0.399 5.399 20 H 0.452 0.548 21 N -0.277 5.277 22 H 0.260 0.740 23 H 0.361 0.639 24 H 0.032 0.968 25 H 0.031 0.969 26 H 0.069 0.931 27 H 0.070 0.930 28 H 0.075 0.925 29 H 0.075 0.925 30 H 0.407 0.593 31 H 0.231 0.769 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 28.326 -4.094 0.009 28.620 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.582 5.582 2 C -0.193 4.193 3 Si 0.717 3.283 4 H -0.211 1.211 5 H -0.217 1.217 6 H -0.204 1.204 7 C -0.375 4.375 8 H 0.109 0.891 9 N -0.403 5.403 10 C 0.033 3.967 11 C -0.181 4.181 12 C 0.000 4.000 13 N -0.363 5.363 14 C 0.391 3.609 15 O -0.380 6.380 16 C -0.126 4.126 17 N -0.186 5.186 18 C -0.102 4.102 19 N -0.122 5.122 20 H 0.299 0.701 21 N -0.118 5.118 22 H 0.070 0.930 23 H 0.193 0.807 24 H 0.050 0.950 25 H 0.049 0.951 26 H 0.088 0.912 27 H 0.088 0.912 28 H 0.094 0.906 29 H 0.094 0.906 30 H 0.242 0.758 31 H 0.248 0.752 Dipole moment (debyes) X Y Z Total from point charges 27.199 -4.944 0.010 27.645 hybrid contribution 1.564 2.137 0.011 2.648 sum 28.763 -2.807 0.021 28.900 Atomic orbital electron populations 1.69704 1.05113 1.25832 1.57584 1.24690 0.95266 0.97258 1.02055 0.86515 0.79164 0.84907 0.77740 1.21075 1.21720 1.20364 1.19079 0.80576 0.94848 1.42985 0.89107 1.42688 1.04116 1.02174 1.91307 1.20500 0.87516 0.89530 0.99195 1.22005 0.97145 0.96091 1.02812 1.21449 0.77059 0.98254 1.03229 1.45823 1.07007 1.09195 1.74245 1.16289 0.81630 0.85326 0.77700 1.90850 1.77922 1.20759 1.48513 1.23947 0.96771 0.84913 1.06973 1.71323 0.97139 1.31923 1.18255 1.26773 1.00687 0.81378 1.01371 1.45140 1.05443 1.09885 1.51733 0.70137 1.74276 0.92037 1.25427 1.20071 0.93042 0.80681 0.95045 0.95095 0.91192 0.91172 0.90621 0.90634 0.75767 0.75239 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -29.65 13.97 55.49 0.78 -28.87 16 2 C 0.00 0.09 5.50 -17.43 -0.10 -0.01 16 3 Si 0.89 22.11 27.74 -169.99 -4.71 17.39 16 4 H -0.28 -7.01 7.11 56.52 0.40 -6.61 16 5 H -0.29 -7.34 7.11 56.52 0.40 -6.94 16 6 H -0.28 -6.46 6.52 56.52 0.37 -6.09 16 7 C -0.25 -7.04 10.47 -15.06 -0.16 -7.20 16 8 H 0.09 2.79 8.06 -52.49 -0.42 2.36 16 9 N -0.76 -18.09 5.41 -59.91 -0.32 -18.41 16 10 C 0.16 3.04 6.26 -4.04 -0.03 3.01 16 11 C -0.14 -2.03 5.44 -26.73 -0.15 -2.17 16 12 C 0.12 1.62 5.67 -4.04 -0.02 1.60 16 13 N -0.71 -8.69 5.55 -61.24 -0.34 -9.03 16 14 C 0.61 8.77 7.83 -12.32 -0.10 8.67 16 15 O -0.51 -9.11 17.09 5.33 0.09 -9.02 16 16 C 0.15 1.92 7.96 -156.35 -1.24 0.68 16 17 N -0.46 -5.39 11.41 -12.37 -0.14 -5.53 16 18 C 0.20 1.13 13.14 -90.49 -1.19 -0.06 16 19 N -0.40 -2.05 6.93 29.56 0.20 -1.84 16 20 H 0.45 0.25 8.96 -190.21 -1.71 -1.45 16 21 N -0.28 -2.62 11.98 32.07 0.38 -2.24 16 22 H 0.26 7.81 8.31 -40.82 -0.34 7.47 16 23 H 0.36 8.29 5.53 -40.82 -0.23 8.07 16 24 H 0.03 0.60 8.14 -51.93 -0.42 0.18 16 25 H 0.03 0.60 8.14 -51.93 -0.42 0.17 16 26 H 0.07 0.96 8.14 -51.93 -0.42 0.54 16 27 H 0.07 0.96 8.14 -51.93 -0.42 0.54 16 28 H 0.08 1.02 8.14 -51.93 -0.42 0.60 16 29 H 0.08 1.02 8.14 -51.93 -0.42 0.60 16 30 H 0.41 4.19 8.17 -40.82 -0.33 3.86 16 31 H 0.23 0.06 8.06 -52.49 -0.42 -0.37 16 LS Contribution 279.04 15.07 4.21 4.21 Total: -1.00 -38.24 279.04 -7.65 -45.89 By element: Atomic # 1 Polarization: 7.75 SS G_CDS: -4.81 Total: 2.93 kcal Atomic # 6 Polarization: 7.50 SS G_CDS: -2.98 Total: 4.52 kcal Atomic # 7 Polarization: -66.48 SS G_CDS: 0.56 Total: -65.92 kcal Atomic # 8 Polarization: -9.11 SS G_CDS: 0.09 Total: -9.02 kcal Atomic # 14 Polarization: 22.11 SS G_CDS: -4.71 Total: 17.39 kcal Total LS contribution 4.21 Total: 4.21 kcal Total: -38.24 -7.65 -45.89 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001168781584.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 109.617 kcal (2) G-P(sol) polarization free energy of solvation -38.239 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 71.379 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.652 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.890 kcal (6) G-S(sol) free energy of system = (1) + (5) 63.727 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds