Wall clock time and date at job start Thu Apr 9 2020 12:08:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.53006 * 113.55892 * 2 1 4 4 C 1.56559 * 114.55921 * 134.24829 * 2 1 3 5 5 H 1.08997 * 114.55779 * 315.12729 * 4 2 1 6 6 N 1.46497 * 114.55942 * 181.38036 * 4 2 1 7 7 C 1.34777 * 119.99969 * 183.85315 * 6 4 2 8 8 O 1.21682 * 120.00247 * 0.02562 * 7 6 4 9 9 C 1.46381 * 119.99809 * 179.97438 * 7 6 4 10 10 H 1.07993 * 120.00336 * 0.02562 * 9 7 6 11 11 C 1.40049 * 119.99867 * 180.02562 * 9 7 6 12 12 N 1.30678 * 119.99785 * 359.97438 * 11 9 7 13 13 Si 1.86793 * 120.00093 * 180.02562 * 11 9 7 14 14 H 1.48500 * 109.47371 * 179.97438 * 13 11 9 15 15 H 1.48503 * 109.47198 * 299.99774 * 13 11 9 16 16 H 1.48505 * 109.47333 * 59.99688 * 13 11 9 17 17 C 1.50329 * 81.36675 * 68.25132 * 4 2 1 18 18 H 1.08997 * 114.28639 * 288.96795 * 17 4 2 19 19 C 1.51867 * 127.88588 * 133.96511 * 17 4 2 20 20 C 1.55784 * 102.15520 * 241.64615 * 19 17 4 21 21 O 1.46077 * 105.44852 * 6.35748 * 20 19 17 22 22 C 1.40018 * 104.06251 * 29.61736 * 21 20 19 23 23 H 1.08998 * 110.01919 * 67.25127 * 22 21 20 24 24 H 1.09000 * 109.46585 * 271.91641 * 1 2 3 25 25 H 1.09002 * 109.46721 * 31.91177 * 1 2 3 26 26 H 1.08996 * 109.47141 * 151.91561 * 1 2 3 27 27 H 1.09002 * 109.46885 * 194.24239 * 3 2 1 28 28 H 1.08992 * 109.47423 * 314.24953 * 3 2 1 29 29 H 1.09004 * 109.46584 * 74.24886 * 3 2 1 30 30 H 0.97004 * 120.00063 * 3.85475 * 6 4 2 31 31 H 0.97005 * 119.99286 * 180.02562 * 12 11 9 32 32 H 1.09006 * 110.86218 * 359.80933 * 19 17 4 33 33 H 1.08995 * 110.86447 * 123.27616 * 19 17 4 34 34 H 1.09003 * 110.24893 * 125.35096 * 20 19 17 35 35 H 1.09001 * 110.25023 * 247.27138 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.1416 1.4025 0.0000 4 6 2.1807 -0.9936 1.0200 5 1 1.7300 -0.9838 2.0124 6 7 3.6454 -0.9707 1.0425 7 6 4.3209 -1.8367 1.8236 8 8 3.7144 -2.6379 2.5098 9 6 5.7844 -1.8142 1.8457 10 1 6.3228 -1.1035 1.2364 11 6 6.4864 -2.7144 2.6569 12 7 5.8349 -3.5742 3.3946 13 14 8.3539 -2.6853 2.6857 14 1 8.8510 -3.7290 3.6178 15 1 8.8742 -2.9517 1.3205 16 1 8.8212 -1.3516 3.1419 17 6 1.5861 -1.9989 0.0737 18 1 0.4986 -2.0624 0.1123 19 6 2.2458 -3.2379 -0.5062 20 6 2.2197 -2.9384 -2.0347 21 8 1.7257 -1.5689 -2.1546 22 6 2.1504 -0.9494 -0.9729 23 1 3.2374 -0.8695 -0.9633 24 1 -0.3632 0.0344 1.0271 25 1 -0.3633 0.8724 -0.5433 26 1 -0.3633 -0.9066 -0.4838 27 1 3.1999 1.3374 -0.2528 28 1 1.6296 2.0222 -0.7361 29 1 2.0310 1.8470 0.9891 30 1 4.1290 -0.3323 0.4953 31 1 6.3212 -4.1974 3.9567 32 1 3.2703 -3.3361 -0.1472 33 1 1.6669 -4.1313 -0.2725 34 1 3.2240 -3.0150 -2.4514 35 1 1.5472 -3.6294 -2.5431 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000376926854.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 12:08:55 Heat of formation + Delta-G solvation = 10.264812 kcal Electronic energy + Delta-G solvation = -18160.465997 eV Core-core repulsion = 15355.282671 eV Total energy + Delta-G solvation = -2805.183326 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 239.131 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -41.86690 -37.16661 -36.07409 -32.67952 -31.87339 -31.13946 -28.60455 -27.44912 -26.19508 -23.90084 -22.90409 -20.44694 -19.33387 -18.22709 -17.32274 -16.12273 -15.41309 -15.31224 -15.18014 -14.40354 -14.04643 -13.68278 -13.31804 -13.14155 -12.54230 -12.29277 -12.18751 -12.04960 -11.39635 -11.36022 -11.16987 -11.07815 -10.90695 -10.64562 -10.51102 -10.41221 -10.17197 -9.85502 -9.46048 -8.88935 -8.56814 -7.64353 -7.53798 -6.22314 -4.68592 3.13205 3.18510 3.19973 3.44978 4.04314 4.33285 4.52918 4.70828 4.93441 5.14568 5.18206 5.30794 5.42746 5.58869 5.67561 5.73403 5.80366 5.84125 5.92309 5.98669 6.04634 6.14180 6.24032 6.26177 6.30921 6.47096 6.54197 6.65068 6.83328 7.29121 7.39414 7.83058 8.03308 8.27029 8.98511 9.46117 10.56076 10.74526 Molecular weight = 239.13amu Principal moments of inertia in cm(-1) A = 0.032247 B = 0.007443 C = 0.007024 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 868.091005 B = 3761.105780 C = 3985.504221 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 C -0.061 4.061 3 C -0.136 4.136 4 C 0.175 3.825 5 H 0.082 0.918 6 N -0.747 5.747 7 C 0.558 3.442 8 O -0.572 6.572 9 C -0.547 4.547 10 H 0.066 0.934 11 C 0.089 3.911 12 N -0.766 5.766 13 Si 0.907 3.093 14 H -0.280 1.280 15 H -0.268 1.268 16 H -0.268 1.268 17 C -0.190 4.190 18 H 0.112 0.888 19 C -0.133 4.133 20 C 0.051 3.949 21 O -0.368 6.368 22 C 0.021 3.979 23 H 0.094 0.906 24 H 0.063 0.937 25 H 0.058 0.942 26 H 0.070 0.930 27 H 0.059 0.941 28 H 0.055 0.945 29 H 0.062 0.938 30 H 0.381 0.619 31 H 0.269 0.731 32 H 0.086 0.914 33 H 0.066 0.934 34 H 0.060 0.940 35 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.163 5.430 -7.527 11.141 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C -0.062 4.062 3 C -0.193 4.193 4 C 0.067 3.933 5 H 0.100 0.900 6 N -0.404 5.404 7 C 0.362 3.638 8 O -0.454 6.454 9 C -0.584 4.584 10 H 0.084 0.916 11 C -0.131 4.131 12 N -0.395 5.395 13 Si 0.732 3.268 14 H -0.205 1.205 15 H -0.193 1.193 16 H -0.193 1.193 17 C -0.210 4.210 18 H 0.129 0.871 19 C -0.170 4.170 20 C -0.025 4.025 21 O -0.287 6.287 22 C -0.037 4.037 23 H 0.111 0.889 24 H 0.081 0.919 25 H 0.077 0.923 26 H 0.088 0.912 27 H 0.078 0.922 28 H 0.074 0.926 29 H 0.081 0.919 30 H 0.215 0.785 31 H 0.080 0.920 32 H 0.105 0.895 33 H 0.084 0.916 34 H 0.078 0.922 35 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges -6.699 4.748 -7.049 10.821 hybrid contribution 1.324 0.110 -0.209 1.345 sum -5.374 4.858 -7.258 10.255 Atomic orbital electron populations 1.21733 0.92024 1.02389 1.02194 1.22247 0.96265 0.93702 0.93953 1.21724 1.00721 0.94947 1.01929 1.21025 0.84199 0.92288 0.95754 0.89988 1.46137 1.02385 1.41367 1.50501 1.18185 0.88098 0.79280 0.78250 1.90616 1.70071 1.40129 1.44544 1.20826 0.89648 1.20003 1.27877 0.91564 1.25680 0.99789 0.93951 0.93716 1.70010 1.36511 1.14114 1.18860 0.86449 0.83155 0.78547 0.78697 1.20543 1.19315 1.19281 1.24707 1.00462 0.94460 1.01396 0.87078 1.22172 1.03282 0.97953 0.93642 1.24122 0.98816 0.82563 0.96969 1.88300 1.77627 1.22818 1.39988 1.24372 0.98110 0.98457 0.82794 0.88877 0.91850 0.92265 0.91168 0.92217 0.92574 0.91863 0.78473 0.92031 0.89538 0.91561 0.92206 0.90106 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.61 8.69 37.16 0.32 -1.28 16 2 C -0.06 -0.91 1.58 -166.40 -0.26 -1.18 16 3 C -0.14 -1.78 9.07 37.16 0.34 -1.44 16 4 C 0.17 3.32 3.85 -80.80 -0.31 3.01 16 5 H 0.08 1.69 8.13 -51.93 -0.42 1.27 16 6 N -0.75 -16.10 4.03 -68.36 -0.28 -16.37 16 7 C 0.56 15.25 6.87 -12.98 -0.09 15.16 16 8 O -0.57 -17.86 15.01 5.20 0.08 -17.78 16 9 C -0.55 -15.04 9.54 -35.63 -0.34 -15.38 16 10 H 0.07 1.67 7.85 -52.49 -0.41 1.26 16 11 C 0.09 2.43 5.50 -17.36 -0.10 2.33 16 12 N -0.77 -22.57 11.83 55.55 0.66 -21.91 16 13 Si 0.91 19.88 29.56 -169.99 -5.02 14.85 16 14 H -0.28 -6.02 7.11 56.52 0.40 -5.62 16 15 H -0.27 -5.73 7.11 56.52 0.40 -5.33 16 16 H -0.27 -5.73 7.11 56.52 0.40 -5.33 16 17 C -0.19 -3.44 4.22 -101.48 -0.43 -3.87 16 18 H 0.11 1.83 5.34 -51.93 -0.28 1.55 16 19 C -0.13 -2.46 6.78 -25.82 -0.18 -2.64 16 20 C 0.05 0.82 7.79 38.64 0.30 1.12 16 21 O -0.37 -6.38 11.45 -32.97 -0.38 -6.76 16 22 C 0.02 0.36 3.97 -38.85 -0.15 0.20 16 23 H 0.09 1.70 5.65 -51.93 -0.29 1.41 16 24 H 0.06 0.75 8.14 -51.93 -0.42 0.32 16 25 H 0.06 0.66 7.90 -51.93 -0.41 0.25 16 26 H 0.07 0.92 6.04 -51.93 -0.31 0.61 16 27 H 0.06 0.79 6.83 -51.93 -0.35 0.44 16 28 H 0.06 0.64 8.00 -51.93 -0.42 0.23 16 29 H 0.06 0.80 8.14 -51.93 -0.42 0.37 16 30 H 0.38 7.37 6.26 -40.82 -0.26 7.11 16 31 H 0.27 7.23 8.29 -40.82 -0.34 6.89 16 32 H 0.09 1.93 7.08 -51.93 -0.37 1.56 16 33 H 0.07 1.16 8.14 -51.93 -0.42 0.74 16 34 H 0.06 0.92 8.14 -51.93 -0.42 0.50 16 35 H 0.08 1.09 8.14 -51.93 -0.42 0.67 16 LS Contribution 279.15 15.07 4.21 4.21 Total: -1.00 -32.43 279.15 -6.40 -38.84 By element: Atomic # 1 Polarization: 13.67 SS G_CDS: -4.77 Total: 8.90 kcal Atomic # 6 Polarization: -3.07 SS G_CDS: -0.90 Total: -3.97 kcal Atomic # 7 Polarization: -38.67 SS G_CDS: 0.38 Total: -38.29 kcal Atomic # 8 Polarization: -24.24 SS G_CDS: -0.30 Total: -24.54 kcal Atomic # 14 Polarization: 19.88 SS G_CDS: -5.02 Total: 14.85 kcal Total LS contribution 4.21 Total: 4.21 kcal Total: -32.43 -6.40 -38.84 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000376926854.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 49.100 kcal (2) G-P(sol) polarization free energy of solvation -32.434 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 16.666 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.401 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.835 kcal (6) G-S(sol) free energy of system = (1) + (5) 10.265 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds