Wall clock time and date at job start Thu Apr 9 2020 12:08:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.53006 * 113.55892 * 2 1 4 4 C 1.56559 * 114.55921 * 134.24829 * 2 1 3 5 5 H 1.08997 * 114.55779 * 315.12729 * 4 2 1 6 6 N 1.46497 * 114.55942 * 181.38036 * 4 2 1 7 7 C 1.34777 * 119.99969 * 183.85315 * 6 4 2 8 8 O 1.21682 * 120.00247 * 0.02562 * 7 6 4 9 9 C 1.46381 * 119.99809 * 179.97438 * 7 6 4 10 10 H 1.07993 * 120.00336 * 0.02562 * 9 7 6 11 11 C 1.40049 * 119.99867 * 180.02562 * 9 7 6 12 12 N 1.30678 * 119.99785 * 359.97438 * 11 9 7 13 13 Si 1.86793 * 120.00093 * 180.02562 * 11 9 7 14 14 H 1.48500 * 109.47371 * 179.97438 * 13 11 9 15 15 H 1.48503 * 109.47198 * 299.99774 * 13 11 9 16 16 H 1.48505 * 109.47333 * 59.99688 * 13 11 9 17 17 C 1.50329 * 81.36675 * 68.25132 * 4 2 1 18 18 H 1.08997 * 114.28639 * 288.96795 * 17 4 2 19 19 C 1.51867 * 127.88588 * 133.96511 * 17 4 2 20 20 C 1.55784 * 102.15520 * 241.64615 * 19 17 4 21 21 O 1.46077 * 105.44852 * 6.35748 * 20 19 17 22 22 C 1.40018 * 104.06251 * 29.61736 * 21 20 19 23 23 H 1.08998 * 110.01919 * 67.25127 * 22 21 20 24 24 H 1.09000 * 109.46585 * 271.91641 * 1 2 3 25 25 H 1.09002 * 109.46721 * 31.91177 * 1 2 3 26 26 H 1.08996 * 109.47141 * 151.91561 * 1 2 3 27 27 H 1.09002 * 109.46885 * 194.24239 * 3 2 1 28 28 H 1.08992 * 109.47423 * 314.24953 * 3 2 1 29 29 H 1.09004 * 109.46584 * 74.24886 * 3 2 1 30 30 H 0.97004 * 120.00063 * 3.85475 * 6 4 2 31 31 H 0.97005 * 119.99286 * 180.02562 * 12 11 9 32 32 H 1.09006 * 110.86218 * 359.80933 * 19 17 4 33 33 H 1.08995 * 110.86447 * 123.27616 * 19 17 4 34 34 H 1.09003 * 110.24893 * 125.35096 * 20 19 17 35 35 H 1.09001 * 110.25023 * 247.27138 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.1416 1.4025 0.0000 4 6 2.1807 -0.9936 1.0200 5 1 1.7300 -0.9838 2.0124 6 7 3.6454 -0.9707 1.0425 7 6 4.3209 -1.8367 1.8236 8 8 3.7144 -2.6379 2.5098 9 6 5.7844 -1.8142 1.8457 10 1 6.3228 -1.1035 1.2364 11 6 6.4864 -2.7144 2.6569 12 7 5.8349 -3.5742 3.3946 13 14 8.3539 -2.6853 2.6857 14 1 8.8510 -3.7290 3.6178 15 1 8.8742 -2.9517 1.3205 16 1 8.8212 -1.3516 3.1419 17 6 1.5861 -1.9989 0.0737 18 1 0.4986 -2.0624 0.1123 19 6 2.2458 -3.2379 -0.5062 20 6 2.2197 -2.9384 -2.0347 21 8 1.7257 -1.5689 -2.1546 22 6 2.1504 -0.9494 -0.9729 23 1 3.2374 -0.8695 -0.9633 24 1 -0.3632 0.0344 1.0271 25 1 -0.3633 0.8724 -0.5433 26 1 -0.3633 -0.9066 -0.4838 27 1 3.1999 1.3374 -0.2528 28 1 1.6296 2.0222 -0.7361 29 1 2.0310 1.8470 0.9891 30 1 4.1290 -0.3323 0.4953 31 1 6.3212 -4.1974 3.9567 32 1 3.2703 -3.3361 -0.1472 33 1 1.6669 -4.1313 -0.2725 34 1 3.2240 -3.0150 -2.4514 35 1 1.5472 -3.6294 -2.5431 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000376926854.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 12:08:54 Heat of formation + Delta-G solvation = -12.815212 kcal Electronic energy + Delta-G solvation = -18161.466822 eV Core-core repulsion = 15355.282671 eV Total energy + Delta-G solvation = -2806.184151 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 239.131 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -43.28065 -39.03340 -37.64790 -34.71160 -33.68038 -32.63740 -29.92039 -28.80638 -27.99217 -25.43049 -24.24878 -22.30392 -20.80622 -19.75215 -19.20728 -17.68246 -17.29750 -16.75449 -16.68858 -16.01954 -15.51472 -15.30454 -14.76992 -14.52919 -14.11583 -14.06093 -13.65688 -13.19399 -12.99821 -12.78710 -12.71647 -12.62515 -12.50121 -12.27057 -12.11362 -12.08767 -11.64026 -11.22907 -10.92544 -10.81170 -10.01215 -9.82686 -9.38712 -8.29437 -6.86069 1.38658 1.41617 1.53014 2.09062 2.22574 2.47522 2.81911 3.23074 3.45585 3.74239 3.80240 3.90340 4.03742 4.07165 4.33745 4.38651 4.50458 4.59101 4.75133 4.81401 4.83649 4.86905 4.97491 4.99472 5.10796 5.14161 5.27023 5.30648 5.35835 5.41168 5.85313 5.92640 6.19159 6.27414 6.86500 7.51460 8.50176 8.67782 Molecular weight = 239.13amu Principal moments of inertia in cm(-1) A = 0.032247 B = 0.007443 C = 0.007024 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 868.091005 B = 3761.105780 C = 3985.504221 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.125 4.125 2 C -0.033 4.033 3 C -0.137 4.137 4 C 0.149 3.851 5 H 0.060 0.940 6 N -0.733 5.733 7 C 0.548 3.452 8 O -0.621 6.621 9 C -0.576 4.576 10 H 0.084 0.916 11 C 0.032 3.968 12 N -0.819 5.819 13 Si 0.993 3.007 14 H -0.275 1.275 15 H -0.256 1.256 16 H -0.255 1.255 17 C -0.206 4.206 18 H 0.132 0.868 19 C -0.136 4.136 20 C 0.058 3.942 21 O -0.370 6.370 22 C 0.032 3.968 23 H 0.075 0.925 24 H 0.072 0.928 25 H 0.085 0.915 26 H 0.067 0.933 27 H 0.054 0.946 28 H 0.082 0.918 29 H 0.069 0.931 30 H 0.393 0.607 31 H 0.274 0.726 32 H 0.040 0.960 33 H 0.070 0.930 34 H 0.062 0.938 35 H 0.112 0.888 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.118 6.927 -9.084 12.959 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.182 4.182 2 C -0.034 4.034 3 C -0.194 4.194 4 C 0.043 3.957 5 H 0.078 0.922 6 N -0.388 5.388 7 C 0.352 3.648 8 O -0.507 6.507 9 C -0.612 4.612 10 H 0.102 0.898 11 C -0.184 4.184 12 N -0.449 5.449 13 Si 0.813 3.187 14 H -0.199 1.199 15 H -0.180 1.180 16 H -0.179 1.179 17 C -0.225 4.225 18 H 0.150 0.850 19 C -0.174 4.174 20 C -0.017 4.017 21 O -0.289 6.289 22 C -0.027 4.027 23 H 0.093 0.907 24 H 0.091 0.909 25 H 0.103 0.897 26 H 0.086 0.914 27 H 0.073 0.927 28 H 0.101 0.899 29 H 0.088 0.912 30 H 0.229 0.771 31 H 0.084 0.916 32 H 0.058 0.942 33 H 0.089 0.911 34 H 0.081 0.919 35 H 0.130 0.870 Dipole moment (debyes) X Y Z Total from point charges -6.673 6.294 -8.650 12.609 hybrid contribution 1.243 -0.372 0.272 1.325 sum -5.431 5.922 -8.378 11.608 Atomic orbital electron populations 1.21774 0.89709 1.03475 1.03263 1.22162 0.97701 0.93580 0.89929 1.21766 1.00612 0.93825 1.03184 1.21242 0.82564 0.95927 0.96006 0.92238 1.45689 1.03830 1.40140 1.49153 1.18441 0.88707 0.79405 0.78263 1.90566 1.71075 1.42301 1.46796 1.21370 0.90340 1.20881 1.28626 0.89807 1.26892 1.06023 0.92871 0.92588 1.70180 1.39331 1.15302 1.20055 0.85135 0.75156 0.79150 0.79274 1.19932 1.18022 1.17854 1.24909 1.01514 0.94600 1.01495 0.85021 1.22147 1.00514 0.98797 0.95972 1.24169 0.99998 0.82635 0.94915 1.88291 1.77569 1.23222 1.39804 1.24261 0.97380 0.98657 0.82366 0.90729 0.90934 0.89666 0.91443 0.92731 0.89939 0.91244 0.77127 0.91642 0.94159 0.91146 0.91923 0.86966 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.80 8.69 71.98 0.63 -2.18 16 2 C -0.03 -0.93 1.58 -59.89 -0.09 -1.02 16 3 C -0.14 -3.22 9.07 71.98 0.65 -2.57 16 4 C 0.15 5.77 3.85 36.66 0.14 5.91 16 5 H 0.06 2.55 8.13 -2.39 -0.02 2.53 16 6 N -0.73 -32.47 4.03 -488.41 -1.97 -34.44 16 7 C 0.55 31.19 6.87 86.36 0.59 31.78 16 8 O -0.62 -40.91 15.01 -4.29 -0.06 -40.98 16 9 C -0.58 -32.37 9.54 24.83 0.24 -32.13 16 10 H 0.08 4.24 7.85 -2.91 -0.02 4.22 16 11 C 0.03 1.75 5.50 85.30 0.47 2.22 16 12 N -0.82 -49.94 11.83 21.84 0.26 -49.68 16 13 Si 0.99 40.88 29.56 68.60 2.03 42.91 16 14 H -0.27 -10.93 7.11 99.48 0.71 -10.22 16 15 H -0.26 -9.96 7.11 99.48 0.71 -9.26 16 16 H -0.25 -9.86 7.11 99.48 0.71 -9.15 16 17 C -0.21 -7.42 4.22 -17.83 -0.08 -7.50 16 18 H 0.13 4.19 5.34 -2.39 -0.01 4.18 16 19 C -0.14 -5.16 6.78 31.18 0.21 -4.95 16 20 C 0.06 1.79 7.79 72.94 0.57 2.35 16 21 O -0.37 -12.03 11.45 -140.89 -1.61 -13.64 16 22 C 0.03 1.04 3.97 22.74 0.09 1.13 16 23 H 0.08 2.71 5.65 -2.39 -0.01 2.70 16 24 H 0.07 1.52 8.14 -2.39 -0.02 1.50 16 25 H 0.08 1.52 7.90 -2.39 -0.02 1.50 16 26 H 0.07 1.57 6.04 -2.39 -0.01 1.56 16 27 H 0.05 1.34 6.83 -2.39 -0.02 1.32 16 28 H 0.08 1.56 8.00 -2.39 -0.02 1.54 16 29 H 0.07 1.58 8.14 -2.39 -0.02 1.56 16 30 H 0.39 15.39 6.26 -92.71 -0.58 14.81 16 31 H 0.27 15.20 8.29 -92.70 -0.77 14.43 16 32 H 0.04 1.88 7.08 -2.38 -0.02 1.87 16 33 H 0.07 2.52 8.14 -2.39 -0.02 2.50 16 34 H 0.06 1.88 8.14 -2.39 -0.02 1.86 16 35 H 0.11 2.75 8.14 -2.39 -0.02 2.73 16 Total: -1.00 -73.19 279.15 2.58 -70.61 By element: Atomic # 1 Polarization: 31.64 SS G_CDS: 0.52 Total: 32.16 kcal Atomic # 6 Polarization: -10.37 SS G_CDS: 3.42 Total: -6.95 kcal Atomic # 7 Polarization: -82.41 SS G_CDS: -1.71 Total: -84.12 kcal Atomic # 8 Polarization: -52.94 SS G_CDS: -1.68 Total: -54.62 kcal Atomic # 14 Polarization: 40.88 SS G_CDS: 2.03 Total: 42.91 kcal Total: -73.19 2.58 -70.61 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000376926854.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 57.792 kcal (2) G-P(sol) polarization free energy of solvation -73.186 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -15.394 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.578 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.607 kcal (6) G-S(sol) free energy of system = (1) + (5) -12.815 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds