Wall clock time and date at job start Thu Apr 9 2020 12:09:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53000 * 112.79194 * 2 1 4 4 C 1.53649 * 113.53638 * 228.94865 * 2 1 3 5 5 H 1.08999 * 113.53490 * 106.10431 * 4 2 1 6 6 N 1.46501 * 113.53209 * 335.44969 * 4 2 1 7 7 C 1.34781 * 119.99495 * 157.49008 * 6 4 2 8 8 O 1.21682 * 120.00453 * 359.97438 * 7 6 4 9 9 C 1.46375 * 119.99340 * 179.97438 * 7 6 4 10 10 H 1.08002 * 120.00566 * 359.97438 * 9 7 6 11 11 C 1.40047 * 119.99658 * 179.97438 * 9 7 6 12 12 N 1.30674 * 120.00176 * 359.97438 * 11 9 7 13 13 Si 1.86806 * 119.99921 * 179.97438 * 11 9 7 14 14 H 1.48497 * 109.47048 * 0.02562 * 13 11 9 15 15 H 1.48500 * 109.46654 * 120.00117 * 13 11 9 16 16 H 1.48495 * 109.47156 * 239.99928 * 13 11 9 17 17 C 1.53749 * 87.57374 * 220.77472 * 4 2 1 18 18 H 1.09002 * 116.36667 * 265.49769 * 17 4 2 19 19 C 1.54496 * 113.35892 * 128.24335 * 17 4 2 20 20 C 1.54454 * 104.13077 * 266.46161 * 19 17 4 21 21 O 1.44390 * 104.68119 * 24.60223 * 20 19 17 22 22 C 1.44245 * 105.40328 * 319.13273 * 21 20 19 23 23 H 1.09002 * 114.89615 * 271.31511 * 22 21 20 24 24 H 1.09000 * 109.46791 * 308.54837 * 1 2 3 25 25 H 1.09000 * 109.46989 * 68.54524 * 1 2 3 26 26 H 1.08997 * 109.47174 * 188.55010 * 1 2 3 27 27 H 1.09000 * 109.47106 * 171.45707 * 3 2 1 28 28 H 1.09008 * 109.46896 * 291.45005 * 3 2 1 29 29 H 1.09000 * 109.47654 * 51.45271 * 3 2 1 30 30 H 0.96996 * 120.00225 * 337.48526 * 6 4 2 31 31 H 0.96995 * 119.99905 * 180.02562 * 12 11 9 32 32 H 1.09002 * 110.49585 * 25.59949 * 19 17 4 33 33 H 1.09001 * 110.50004 * 148.27245 * 19 17 4 34 34 H 1.09007 * 110.68060 * 265.68537 * 20 19 17 35 35 H 1.09004 * 110.18672 * 143.27165 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.1227 1.4105 0.0000 4 6 2.1436 -0.9251 -1.0623 5 1 2.5715 -0.3904 -1.9103 6 7 1.2570 -2.0186 -1.4681 7 6 1.4329 -2.6213 -2.6608 8 8 2.3277 -2.2570 -3.4006 9 6 0.5475 -3.7142 -3.0659 10 1 -0.2464 -4.0379 -2.4092 11 6 0.7299 -4.3402 -4.3054 12 7 1.6901 -3.9483 -5.1003 13 14 -0.3997 -5.7354 -4.8223 14 1 -1.3986 -5.9858 -3.7524 15 1 -1.1016 -5.3648 -6.0774 16 1 0.4029 -6.9642 -5.0483 17 6 3.1841 -1.3374 -0.0081 18 1 4.1275 -0.7915 -0.0198 19 6 3.3077 -2.8677 0.1647 20 6 2.3458 -3.1947 1.3281 21 8 1.3809 -2.1206 1.3180 22 6 2.1433 -0.9229 1.0633 23 1 2.5336 -0.4295 1.9535 24 1 -0.3633 0.6404 0.8037 25 1 -0.3633 0.3759 -0.9565 26 1 -0.3633 -1.0162 0.1528 27 1 3.2004 1.3518 0.1527 28 1 1.9170 1.8911 -0.9566 29 1 1.6731 1.9937 0.8037 30 1 0.5436 -2.3088 -0.8785 31 1 1.8161 -4.3816 -5.9589 32 1 3.0033 -3.3807 -0.7476 33 1 4.3281 -3.1401 0.4346 34 1 2.8820 -3.2142 2.2770 35 1 1.8521 -4.1501 1.1507 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000376926858.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 12:09:02 Heat of formation + Delta-G solvation = -60.646899 kcal Electronic energy + Delta-G solvation = -18252.875427 eV Core-core repulsion = 15444.617139 eV Total energy + Delta-G solvation = -2808.258289 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 239.131 amu Computer time = -0.06 seconds Orbital eigenvalues (eV) -40.98600 -36.83757 -35.57520 -32.61315 -31.88379 -31.09076 -28.55331 -27.06501 -26.32154 -23.86460 -22.73384 -20.41976 -19.56945 -18.10822 -17.06486 -16.04510 -15.54849 -15.24327 -14.96065 -14.45162 -13.93855 -13.54557 -13.17232 -12.88144 -12.42207 -12.23736 -12.08023 -11.93362 -11.79552 -11.40227 -11.17818 -11.02460 -10.67009 -10.59458 -10.45772 -10.37238 -10.14026 -9.92768 -9.61477 -9.10040 -8.83194 -7.56658 -7.39740 -6.15836 -4.60538 3.14202 3.22741 3.27366 3.94216 4.13153 4.58574 4.62493 4.76299 5.09055 5.20743 5.28089 5.39558 5.46999 5.57811 5.61811 5.72006 5.86349 5.90165 5.99347 6.03338 6.10740 6.12844 6.21729 6.30849 6.33424 6.56673 6.74714 6.75185 6.77272 7.21028 7.46666 8.03160 8.22217 8.40926 9.06005 9.63615 10.63784 10.83677 Molecular weight = 239.13amu Principal moments of inertia in cm(-1) A = 0.031544 B = 0.007751 C = 0.007371 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 887.427964 B = 3611.686354 C = 3797.762218 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 C -0.094 4.094 3 C -0.122 4.122 4 C 0.164 3.836 5 H 0.088 0.912 6 N -0.737 5.737 7 C 0.556 3.444 8 O -0.582 6.582 9 C -0.544 4.544 10 H 0.067 0.933 11 C 0.088 3.912 12 N -0.768 5.768 13 Si 0.905 3.095 14 H -0.264 1.264 15 H -0.277 1.277 16 H -0.277 1.277 17 C -0.160 4.160 18 H 0.101 0.899 19 C -0.142 4.142 20 C 0.054 3.946 21 O -0.356 6.356 22 C 0.056 3.944 23 H 0.079 0.921 24 H 0.046 0.954 25 H 0.055 0.945 26 H 0.067 0.933 27 H 0.057 0.943 28 H 0.064 0.936 29 H 0.056 0.944 30 H 0.387 0.613 31 H 0.267 0.733 32 H 0.095 0.905 33 H 0.060 0.940 34 H 0.049 0.951 35 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.397 4.875 11.562 12.554 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C -0.095 4.095 3 C -0.179 4.179 4 C 0.055 3.945 5 H 0.106 0.894 6 N -0.392 5.392 7 C 0.360 3.640 8 O -0.465 6.465 9 C -0.581 4.581 10 H 0.085 0.915 11 C -0.131 4.131 12 N -0.397 5.397 13 Si 0.730 3.270 14 H -0.188 1.188 15 H -0.202 1.202 16 H -0.202 1.202 17 C -0.180 4.180 18 H 0.119 0.881 19 C -0.180 4.180 20 C -0.023 4.023 21 O -0.275 6.275 22 C -0.002 4.002 23 H 0.097 0.903 24 H 0.065 0.935 25 H 0.075 0.925 26 H 0.086 0.914 27 H 0.076 0.924 28 H 0.083 0.917 29 H 0.076 0.924 30 H 0.222 0.778 31 H 0.077 0.923 32 H 0.113 0.887 33 H 0.079 0.921 34 H 0.067 0.933 35 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges 0.900 5.074 10.848 12.009 hybrid contribution -0.535 -0.889 0.086 1.041 sum 0.365 4.185 10.934 11.713 Atomic orbital electron populations 1.21502 0.93601 1.02359 1.00934 1.22236 0.96667 0.94431 0.96214 1.21479 1.00361 0.93963 1.02119 1.21328 0.90000 0.88888 0.94292 0.89377 1.45925 1.34981 1.36865 1.21409 1.18222 0.84748 0.82407 0.78631 1.90592 1.36008 1.66961 1.52935 1.20916 1.16290 1.17669 1.03225 0.91494 1.25694 0.94682 0.96858 0.95914 1.70035 1.26157 1.35746 1.07772 0.86360 0.80614 0.81027 0.79024 1.18779 1.20214 1.20234 1.24562 0.98388 0.96174 0.98909 0.88128 1.22780 0.98813 0.96050 1.00339 1.23402 0.90540 0.91495 0.96859 1.88929 1.30418 1.15435 1.92682 1.24081 0.92699 0.88218 0.95192 0.90312 0.93468 0.92546 0.91431 0.92432 0.91729 0.92449 0.77821 0.92274 0.88685 0.92097 0.93259 0.89267 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.94 8.49 37.16 0.32 -1.62 16 2 C -0.09 -1.45 1.31 -153.87 -0.20 -1.65 16 3 C -0.12 -1.51 9.08 37.16 0.34 -1.17 16 4 C 0.16 3.19 3.64 -67.20 -0.24 2.94 16 5 H 0.09 1.94 7.48 -51.93 -0.39 1.55 16 6 N -0.74 -16.63 3.26 -54.51 -0.18 -16.81 16 7 C 0.56 15.68 6.90 -12.98 -0.09 15.59 16 8 O -0.58 -18.68 14.65 5.21 0.08 -18.60 16 9 C -0.54 -15.41 9.54 -35.63 -0.34 -15.75 16 10 H 0.07 1.77 7.85 -52.49 -0.41 1.36 16 11 C 0.09 2.46 5.50 -17.37 -0.10 2.37 16 12 N -0.77 -23.06 11.83 55.55 0.66 -22.40 16 13 Si 0.90 20.30 29.56 -169.99 -5.02 15.28 16 14 H -0.26 -5.74 7.11 56.52 0.40 -5.34 16 15 H -0.28 -6.10 7.11 56.52 0.40 -5.70 16 16 H -0.28 -6.08 7.11 56.52 0.40 -5.68 16 17 C -0.16 -2.67 4.64 -88.38 -0.41 -3.08 16 18 H 0.10 1.50 8.02 -51.93 -0.42 1.09 16 19 C -0.14 -2.44 6.27 -25.18 -0.16 -2.60 16 20 C 0.05 0.81 7.63 37.92 0.29 1.10 16 21 O -0.36 -5.91 8.71 -35.23 -0.31 -6.21 16 22 C 0.06 0.85 4.68 -25.37 -0.12 0.73 16 23 H 0.08 1.04 8.14 -51.93 -0.42 0.62 16 24 H 0.05 0.62 8.14 -51.93 -0.42 0.20 16 25 H 0.06 0.90 8.14 -51.93 -0.42 0.47 16 26 H 0.07 1.12 5.70 -51.93 -0.30 0.83 16 27 H 0.06 0.66 7.64 -51.93 -0.40 0.26 16 28 H 0.06 0.81 8.14 -51.92 -0.42 0.39 16 29 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 30 H 0.39 8.30 5.83 -40.82 -0.24 8.06 16 31 H 0.27 7.26 8.29 -40.82 -0.34 6.92 16 32 H 0.09 2.05 6.40 -51.93 -0.33 1.71 16 33 H 0.06 0.92 8.14 -51.93 -0.42 0.50 16 34 H 0.05 0.64 8.14 -51.92 -0.42 0.21 16 35 H 0.09 1.33 8.14 -51.93 -0.42 0.91 16 LS Contribution 279.35 15.07 4.21 4.21 Total: -1.00 -32.85 279.35 -6.28 -39.12 By element: Atomic # 1 Polarization: 13.54 SS G_CDS: -5.00 Total: 8.55 kcal Atomic # 6 Polarization: -2.42 SS G_CDS: -0.71 Total: -3.13 kcal Atomic # 7 Polarization: -39.69 SS G_CDS: 0.48 Total: -39.21 kcal Atomic # 8 Polarization: -24.58 SS G_CDS: -0.23 Total: -24.81 kcal Atomic # 14 Polarization: 20.30 SS G_CDS: -5.02 Total: 15.28 kcal Total LS contribution 4.21 Total: 4.21 kcal Total: -32.85 -6.28 -39.12 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000376926858.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -21.523 kcal (2) G-P(sol) polarization free energy of solvation -32.847 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -54.370 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.277 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.124 kcal (6) G-S(sol) free energy of system = (1) + (5) -60.647 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = -0.06 seconds