Wall clock time and date at job start Thu Apr 9 2020 12:09:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53000 * 112.79194 * 2 1 4 4 C 1.53649 * 113.53638 * 228.94865 * 2 1 3 5 5 H 1.08999 * 113.53490 * 106.10431 * 4 2 1 6 6 N 1.46501 * 113.53209 * 335.44969 * 4 2 1 7 7 C 1.34781 * 119.99495 * 157.49008 * 6 4 2 8 8 O 1.21682 * 120.00453 * 359.97438 * 7 6 4 9 9 C 1.46375 * 119.99340 * 179.97438 * 7 6 4 10 10 H 1.08002 * 120.00566 * 359.97438 * 9 7 6 11 11 C 1.40047 * 119.99658 * 179.97438 * 9 7 6 12 12 N 1.30674 * 120.00176 * 359.97438 * 11 9 7 13 13 Si 1.86806 * 119.99921 * 179.97438 * 11 9 7 14 14 H 1.48497 * 109.47048 * 0.02562 * 13 11 9 15 15 H 1.48500 * 109.46654 * 120.00117 * 13 11 9 16 16 H 1.48495 * 109.47156 * 239.99928 * 13 11 9 17 17 C 1.53749 * 87.57374 * 220.77472 * 4 2 1 18 18 H 1.09002 * 116.36667 * 265.49769 * 17 4 2 19 19 C 1.54496 * 113.35892 * 128.24335 * 17 4 2 20 20 C 1.54454 * 104.13077 * 266.46161 * 19 17 4 21 21 O 1.44390 * 104.68119 * 24.60223 * 20 19 17 22 22 C 1.44245 * 105.40328 * 319.13273 * 21 20 19 23 23 H 1.09002 * 114.89615 * 271.31511 * 22 21 20 24 24 H 1.09000 * 109.46791 * 308.54837 * 1 2 3 25 25 H 1.09000 * 109.46989 * 68.54524 * 1 2 3 26 26 H 1.08997 * 109.47174 * 188.55010 * 1 2 3 27 27 H 1.09000 * 109.47106 * 171.45707 * 3 2 1 28 28 H 1.09008 * 109.46896 * 291.45005 * 3 2 1 29 29 H 1.09000 * 109.47654 * 51.45271 * 3 2 1 30 30 H 0.96996 * 120.00225 * 337.48526 * 6 4 2 31 31 H 0.96995 * 119.99905 * 180.02562 * 12 11 9 32 32 H 1.09002 * 110.49585 * 25.59949 * 19 17 4 33 33 H 1.09001 * 110.50004 * 148.27245 * 19 17 4 34 34 H 1.09007 * 110.68060 * 265.68537 * 20 19 17 35 35 H 1.09004 * 110.18672 * 143.27165 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.1227 1.4105 0.0000 4 6 2.1436 -0.9251 -1.0623 5 1 2.5715 -0.3904 -1.9103 6 7 1.2570 -2.0186 -1.4681 7 6 1.4329 -2.6213 -2.6608 8 8 2.3277 -2.2570 -3.4006 9 6 0.5475 -3.7142 -3.0659 10 1 -0.2464 -4.0379 -2.4092 11 6 0.7299 -4.3402 -4.3054 12 7 1.6901 -3.9483 -5.1003 13 14 -0.3997 -5.7354 -4.8223 14 1 -1.3986 -5.9858 -3.7524 15 1 -1.1016 -5.3648 -6.0774 16 1 0.4029 -6.9642 -5.0483 17 6 3.1841 -1.3374 -0.0081 18 1 4.1275 -0.7915 -0.0198 19 6 3.3077 -2.8677 0.1647 20 6 2.3458 -3.1947 1.3281 21 8 1.3809 -2.1206 1.3180 22 6 2.1433 -0.9229 1.0633 23 1 2.5336 -0.4295 1.9535 24 1 -0.3633 0.6404 0.8037 25 1 -0.3633 0.3759 -0.9565 26 1 -0.3633 -1.0162 0.1528 27 1 3.2004 1.3518 0.1527 28 1 1.9170 1.8911 -0.9566 29 1 1.6731 1.9937 0.8037 30 1 0.5436 -2.3088 -0.8785 31 1 1.8161 -4.3816 -5.9589 32 1 3.0033 -3.3807 -0.7476 33 1 4.3281 -3.1401 0.4346 34 1 2.8820 -3.2142 2.2770 35 1 1.8521 -4.1501 1.1507 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000376926858.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 12:09:00 Heat of formation + Delta-G solvation = -83.617450 kcal Electronic energy + Delta-G solvation = -18253.871505 eV Core-core repulsion = 15444.617139 eV Total energy + Delta-G solvation = -2809.254366 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 239.131 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -42.34968 -38.87072 -36.96418 -34.70339 -33.64323 -32.65925 -29.83034 -28.61143 -27.99226 -25.44050 -23.96828 -22.09648 -21.20754 -19.78409 -18.78999 -17.68179 -17.12067 -16.82551 -16.43439 -15.88451 -15.74578 -15.16055 -14.54759 -14.39919 -14.01240 -13.77390 -13.64481 -13.25980 -13.06425 -12.92783 -12.80907 -12.70600 -12.59550 -12.04202 -11.98736 -11.83682 -11.72022 -11.31993 -10.96989 -10.88650 -10.39059 -9.82078 -9.31870 -8.28761 -6.84510 1.37731 1.38015 1.55722 2.23532 2.47753 2.70728 3.12239 3.36055 3.54953 3.76745 3.93193 4.02195 4.19418 4.26728 4.31823 4.45747 4.52237 4.67241 4.79154 4.84043 4.86344 4.93440 4.99533 5.03287 5.16233 5.20074 5.31284 5.31586 5.45325 5.50649 5.91270 5.98417 6.27170 6.42843 6.87509 7.61951 8.52701 8.70073 Molecular weight = 239.13amu Principal moments of inertia in cm(-1) A = 0.031544 B = 0.007751 C = 0.007371 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 887.427964 B = 3611.686354 C = 3797.762218 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 C -0.083 4.083 3 C -0.118 4.118 4 C 0.135 3.865 5 H 0.051 0.949 6 N -0.723 5.723 7 C 0.544 3.456 8 O -0.633 6.633 9 C -0.573 4.573 10 H 0.079 0.921 11 C 0.030 3.970 12 N -0.821 5.821 13 Si 0.994 3.006 14 H -0.250 1.250 15 H -0.268 1.268 16 H -0.267 1.267 17 C -0.160 4.160 18 H 0.121 0.879 19 C -0.145 4.145 20 C 0.058 3.942 21 O -0.374 6.374 22 C 0.071 3.929 23 H 0.118 0.882 24 H 0.077 0.923 25 H 0.041 0.959 26 H 0.050 0.950 27 H 0.069 0.931 28 H 0.056 0.944 29 H 0.086 0.914 30 H 0.393 0.607 31 H 0.273 0.727 32 H 0.042 0.958 33 H 0.081 0.919 34 H 0.085 0.915 35 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.349 4.950 13.939 14.795 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C -0.084 4.084 3 C -0.176 4.176 4 C 0.028 3.972 5 H 0.069 0.931 6 N -0.375 5.375 7 C 0.348 3.652 8 O -0.520 6.520 9 C -0.610 4.610 10 H 0.098 0.902 11 C -0.185 4.185 12 N -0.450 5.450 13 Si 0.814 3.186 14 H -0.173 1.173 15 H -0.193 1.193 16 H -0.192 1.192 17 C -0.180 4.180 18 H 0.139 0.861 19 C -0.183 4.183 20 C -0.018 4.018 21 O -0.293 6.293 22 C 0.014 3.986 23 H 0.135 0.865 24 H 0.095 0.905 25 H 0.060 0.940 26 H 0.069 0.931 27 H 0.088 0.912 28 H 0.075 0.925 29 H 0.105 0.895 30 H 0.229 0.771 31 H 0.083 0.917 32 H 0.060 0.940 33 H 0.100 0.900 34 H 0.103 0.897 35 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges 0.141 5.175 13.285 14.258 hybrid contribution -0.261 -0.859 -0.642 1.103 sum -0.120 4.316 12.643 13.360 Atomic orbital electron populations 1.21487 0.93621 1.01875 1.01312 1.22280 0.96723 0.95502 0.93887 1.21503 1.01257 0.91931 1.02884 1.21649 0.91682 0.89164 0.94728 0.93119 1.45516 1.35270 1.36991 1.19770 1.18497 0.84196 0.82728 0.79735 1.90538 1.37963 1.68560 1.54956 1.21404 1.16924 1.18344 1.04336 0.90240 1.26918 0.96283 0.99831 0.95443 1.70195 1.28498 1.37777 1.08564 0.85022 0.78098 0.76591 0.78891 1.17272 1.19281 1.19203 1.24596 0.99092 0.96162 0.98186 0.86082 1.22739 1.00552 0.95999 0.99038 1.23458 0.89951 0.91010 0.97373 1.88913 1.31378 1.16239 1.92728 1.24146 0.91083 0.87546 0.95836 0.86490 0.90452 0.93961 0.93133 0.91179 0.92533 0.89520 0.77103 0.91676 0.93960 0.90049 0.89674 0.89722 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.67 8.49 71.98 0.61 -3.06 16 2 C -0.08 -2.41 1.31 -51.77 -0.07 -2.48 16 3 C -0.12 -2.61 9.08 71.98 0.65 -1.96 16 4 C 0.14 5.40 3.64 45.46 0.17 5.56 16 5 H 0.05 2.37 7.48 -2.39 -0.02 2.35 16 6 N -0.72 -33.95 3.26 -444.58 -1.45 -35.40 16 7 C 0.54 32.38 6.90 86.36 0.60 32.97 16 8 O -0.63 -43.21 14.65 -4.29 -0.06 -43.27 16 9 C -0.57 -33.56 9.54 24.83 0.24 -33.33 16 10 H 0.08 4.28 7.85 -2.91 -0.02 4.26 16 11 C 0.03 1.72 5.50 85.30 0.47 2.19 16 12 N -0.82 -51.18 11.83 21.84 0.26 -50.92 16 13 Si 0.99 42.12 29.56 68.60 2.03 44.15 16 14 H -0.25 -9.88 7.11 99.48 0.71 -9.17 16 15 H -0.27 -10.90 7.11 99.48 0.71 -10.19 16 16 H -0.27 -10.83 7.11 99.48 0.71 -10.12 16 17 C -0.16 -5.18 4.64 -9.34 -0.04 -5.22 16 18 H 0.12 3.39 8.02 -2.39 -0.02 3.37 16 19 C -0.15 -4.95 6.27 31.60 0.20 -4.75 16 20 C 0.06 1.66 7.63 72.48 0.55 2.21 16 21 O -0.37 -11.56 8.71 -148.98 -1.30 -12.86 16 22 C 0.07 1.94 4.68 31.48 0.15 2.08 16 23 H 0.12 2.43 8.14 -2.39 -0.02 2.41 16 24 H 0.08 1.79 8.14 -2.39 -0.02 1.78 16 25 H 0.04 1.33 8.14 -2.39 -0.02 1.31 16 26 H 0.05 1.64 5.70 -2.39 -0.01 1.62 16 27 H 0.07 1.38 7.64 -2.39 -0.02 1.36 16 28 H 0.06 1.34 8.14 -2.38 -0.02 1.33 16 29 H 0.09 1.46 8.14 -2.39 -0.02 1.44 16 30 H 0.39 17.35 5.83 -92.71 -0.54 16.81 16 31 H 0.27 15.40 8.29 -92.71 -0.77 14.63 16 32 H 0.04 1.90 6.40 -2.39 -0.02 1.88 16 33 H 0.08 2.38 8.14 -2.39 -0.02 2.36 16 34 H 0.09 1.86 8.14 -2.38 -0.02 1.85 16 35 H 0.08 2.46 8.14 -2.38 -0.02 2.44 16 Total: -1.00 -75.93 279.35 3.54 -72.38 By element: Atomic # 1 Polarization: 31.15 SS G_CDS: 0.55 Total: 31.70 kcal Atomic # 6 Polarization: -9.29 SS G_CDS: 3.52 Total: -5.78 kcal Atomic # 7 Polarization: -85.13 SS G_CDS: -1.19 Total: -86.32 kcal Atomic # 8 Polarization: -54.77 SS G_CDS: -1.36 Total: -56.13 kcal Atomic # 14 Polarization: 42.12 SS G_CDS: 2.03 Total: 44.15 kcal Total: -75.93 3.54 -72.38 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000376926858.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -11.233 kcal (2) G-P(sol) polarization free energy of solvation -75.928 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -87.161 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.544 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.384 kcal (6) G-S(sol) free energy of system = (1) + (5) -83.617 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds