Wall clock time and date at job start Thu Apr 9 2020 12:09:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86806 * 119.99980 * 2 1 4 4 H 1.48497 * 109.47050 * 179.97438 * 3 2 1 5 5 H 1.48495 * 109.47091 * 300.00143 * 3 2 1 6 6 H 1.48508 * 109.46813 * 59.99875 * 3 2 1 7 7 C 1.37879 * 120.00291 * 179.97438 * 2 1 3 8 8 H 1.07998 * 119.99956 * 173.55783 * 7 2 1 9 9 C 1.50695 * 119.99702 * 353.55194 * 7 2 1 10 10 C 1.53004 * 115.54756 * 85.40683 * 9 7 2 11 11 N 1.46496 * 109.47261 * 65.14139 * 10 9 7 12 12 C 1.34773 * 120.00252 * 178.27408 * 11 10 9 13 13 O 1.21284 * 120.00033 * 0.02562 * 12 11 10 14 14 C 1.50705 * 120.00064 * 179.72402 * 12 11 10 15 15 H 1.09005 * 109.86850 * 304.26539 * 14 12 11 16 16 C 1.54096 * 109.87909 * 65.27587 * 14 12 11 17 17 C 1.54814 * 104.18708 * 121.45320 * 16 14 12 18 18 C 1.54994 * 102.08995 * 20.88161 * 17 16 14 19 19 O 1.43747 * 109.87834 * 183.10773 * 14 12 11 20 20 C 1.53002 * 117.50321 * 231.07483 * 9 7 2 21 21 C 1.53002 * 117.50088 * 299.73674 * 9 7 2 22 22 H 0.97005 * 119.99714 * 5.05653 * 1 2 3 23 23 H 1.08996 * 109.47174 * 305.13977 * 10 9 7 24 24 H 1.09003 * 109.46941 * 185.14127 * 10 9 7 25 25 H 0.97006 * 119.99719 * 358.27350 * 11 10 9 26 26 H 1.08996 * 110.49030 * 240.13006 * 16 14 12 27 27 H 1.09001 * 110.48784 * 2.64464 * 16 14 12 28 28 H 1.09004 * 110.90648 * 139.07765 * 17 16 14 29 29 H 1.08999 * 110.90935 * 262.68292 * 17 16 14 30 30 H 1.09001 * 110.61980 * 81.47700 * 18 17 16 31 31 H 1.09007 * 110.61759 * 204.31623 * 18 17 16 32 32 H 1.08992 * 117.50058 * 215.00661 * 20 9 7 33 33 H 1.09008 * 117.49432 * 0.02562 * 20 9 7 34 34 H 1.08995 * 117.50280 * 359.97438 * 21 9 7 35 35 H 1.08999 * 117.49632 * 144.97376 * 21 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 3.7092 1.3464 0.0006 5 1 1.8904 2.3965 -1.2124 6 1 1.8903 2.3965 1.2126 7 6 2.0046 -1.1940 0.0005 8 1 3.0795 -1.1970 -0.1044 9 6 1.2583 -2.4949 0.1477 10 6 0.7022 -3.0869 -1.1490 11 7 1.8113 -3.4600 -2.0305 12 6 1.5601 -4.0375 -3.2220 13 8 0.4159 -4.2479 -3.5648 14 6 2.7008 -4.4156 -4.1315 15 1 3.3217 -3.5419 -4.3299 16 6 3.5485 -5.5231 -3.4761 17 6 3.4960 -6.6915 -4.4904 18 6 3.1106 -5.9642 -5.8037 19 8 2.1873 -4.9444 -5.3656 20 6 1.7471 -3.4728 1.2181 21 6 0.4419 -2.7004 1.4252 22 1 -0.4850 0.8368 -0.0740 23 1 0.0756 -2.3470 -1.6468 24 1 0.1076 -3.9711 -0.9190 25 1 2.7264 -3.2914 -1.7565 26 1 4.5752 -5.1852 -3.3362 27 1 3.1132 -5.8229 -2.5228 28 1 4.4707 -7.1705 -4.5827 29 1 2.7326 -7.4169 -4.2091 30 1 3.9893 -5.5137 -6.2652 31 1 2.6255 -6.6527 -6.4958 32 1 1.6727 -4.5378 0.9985 33 1 2.6084 -3.1749 1.8162 34 1 0.4449 -1.8949 2.1595 35 1 -0.4915 -3.2571 1.3419 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000404150959.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 12:09:35 Heat of formation + Delta-G solvation = -64.955206 kcal Electronic energy + Delta-G solvation = -17307.432007 eV Core-core repulsion = 14498.986896 eV Total energy + Delta-G solvation = -2808.445111 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 239.131 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -39.96208 -38.06692 -36.57061 -33.40309 -32.06952 -31.95902 -29.76670 -26.28313 -25.22614 -23.13544 -21.73811 -21.20759 -19.73632 -19.32911 -17.27783 -16.48894 -16.06210 -15.71443 -14.75133 -14.71305 -14.44898 -14.03326 -13.69298 -13.66277 -12.94395 -12.65964 -11.96265 -11.80600 -11.61766 -11.47411 -11.31834 -11.03734 -10.95792 -10.91763 -10.53867 -10.29305 -9.98876 -9.64661 -9.06666 -8.98398 -8.52445 -8.29190 -8.09065 -6.09830 -4.18862 3.13606 3.23795 3.32928 3.34526 3.46846 4.17206 4.33747 4.49602 4.76955 4.85056 5.09904 5.13825 5.18460 5.32121 5.50088 5.57818 5.59245 5.65983 5.85115 5.95743 6.01105 6.31226 6.44620 6.54645 6.66409 6.78054 6.88777 7.07435 7.27678 7.41413 7.46842 7.79539 8.28278 8.31468 8.81925 8.88433 9.48331 10.98105 Molecular weight = 239.13amu Principal moments of inertia in cm(-1) A = 0.029087 B = 0.006263 C = 0.005834 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 962.414626 B = 4469.562845 C = 4798.575411 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.874 5.874 2 C 0.074 3.926 3 Si 0.890 3.110 4 H -0.272 1.272 5 H -0.284 1.284 6 H -0.283 1.283 7 C -0.501 4.501 8 H 0.061 0.939 9 C 0.027 3.973 10 C 0.164 3.836 11 N -0.701 5.701 12 C 0.503 3.497 13 O -0.538 6.538 14 C 0.059 3.941 15 H 0.093 0.907 16 C -0.147 4.147 17 C -0.153 4.153 18 C 0.043 3.957 19 O -0.348 6.348 20 C -0.210 4.210 21 C -0.148 4.148 22 H 0.262 0.738 23 H 0.073 0.927 24 H 0.037 0.963 25 H 0.400 0.600 26 H 0.085 0.915 27 H 0.084 0.916 28 H 0.081 0.919 29 H 0.078 0.922 30 H 0.061 0.939 31 H 0.094 0.906 32 H 0.065 0.935 33 H 0.078 0.922 34 H 0.084 0.916 35 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.727 -9.858 -5.653 14.328 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.510 5.510 2 C -0.131 4.131 3 Si 0.718 3.282 4 H -0.197 1.197 5 H -0.210 1.210 6 H -0.209 1.209 7 C -0.539 4.539 8 H 0.079 0.921 9 C 0.026 3.974 10 C 0.042 3.958 11 N -0.351 5.351 12 C 0.287 3.713 13 O -0.415 6.415 14 C -0.002 4.002 15 H 0.111 0.889 16 C -0.185 4.185 17 C -0.191 4.191 18 C -0.034 4.034 19 O -0.266 6.266 20 C -0.248 4.248 21 C -0.186 4.186 22 H 0.072 0.928 23 H 0.091 0.909 24 H 0.055 0.945 25 H 0.234 0.766 26 H 0.104 0.896 27 H 0.103 0.897 28 H 0.100 0.900 29 H 0.097 0.903 30 H 0.079 0.921 31 H 0.112 0.888 32 H 0.083 0.917 33 H 0.097 0.903 34 H 0.102 0.898 35 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges 7.513 -9.799 -5.931 13.698 hybrid contribution 1.016 1.048 0.269 1.484 sum 8.529 -8.751 -5.661 13.468 Atomic orbital electron populations 1.69987 1.05925 1.26894 1.48171 1.24999 0.94803 0.99005 0.94260 0.86574 0.80142 0.83825 0.77681 1.19709 1.20998 1.20921 1.20373 0.92859 0.88581 1.52072 0.92101 1.19047 0.98660 0.93973 0.85719 1.21003 0.87249 0.96940 0.90648 1.45895 1.11538 1.60158 1.17552 1.20292 0.90008 0.78702 0.82298 1.90675 1.22419 1.54440 1.74002 1.22671 0.93792 0.97907 0.85846 0.88937 1.22941 1.00685 0.94689 1.00168 1.23135 1.02622 0.98213 0.95134 1.23600 0.93397 0.89882 0.96489 1.89016 1.47041 1.54071 1.36437 1.23025 0.98701 0.95628 1.07422 1.22493 0.92281 1.01078 1.02728 0.92832 0.90906 0.94469 0.76634 0.89633 0.89736 0.90007 0.90318 0.92078 0.88830 0.91662 0.90327 0.89790 0.91648 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -24.31 12.91 55.43 0.72 -23.59 16 2 C 0.07 1.95 5.39 -17.82 -0.10 1.85 16 3 Si 0.89 20.45 29.55 -169.99 -5.02 15.43 16 4 H -0.27 -6.11 7.11 56.52 0.40 -5.71 16 5 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16 6 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16 7 C -0.50 -12.77 8.63 -34.44 -0.30 -13.07 16 8 H 0.06 1.51 7.82 -52.49 -0.41 1.10 16 9 C 0.03 0.62 1.38 -155.66 -0.21 0.41 16 10 C 0.16 3.76 5.50 -4.04 -0.02 3.74 16 11 N -0.70 -13.65 5.45 -60.29 -0.33 -13.97 16 12 C 0.50 9.89 6.95 -10.98 -0.08 9.81 16 13 O -0.54 -13.01 16.53 -14.02 -0.23 -13.24 16 14 C 0.06 0.89 3.84 -27.31 -0.10 0.79 16 15 H 0.09 1.23 8.14 -51.93 -0.42 0.81 16 16 C -0.15 -1.66 6.62 -25.20 -0.17 -1.82 16 17 C -0.15 -1.50 7.15 -24.72 -0.18 -1.68 16 18 C 0.04 0.47 7.72 38.21 0.29 0.77 16 19 O -0.35 -5.68 10.74 -54.81 -0.59 -6.27 16 20 C -0.21 -4.29 9.96 -26.69 -0.27 -4.56 16 21 C -0.15 -3.35 9.42 -26.69 -0.25 -3.60 16 22 H 0.26 6.99 8.32 -40.82 -0.34 6.65 16 23 H 0.07 1.93 8.14 -51.93 -0.42 1.51 16 24 H 0.04 0.84 8.09 -51.93 -0.42 0.42 16 25 H 0.40 6.92 8.37 -40.82 -0.34 6.58 16 26 H 0.09 0.75 8.14 -51.93 -0.42 0.33 16 27 H 0.08 1.02 7.69 -51.93 -0.40 0.62 16 28 H 0.08 0.59 8.14 -51.93 -0.42 0.16 16 29 H 0.08 0.81 8.14 -51.93 -0.42 0.39 16 30 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 31 H 0.09 0.88 8.14 -51.92 -0.42 0.46 16 32 H 0.06 1.21 8.14 -51.93 -0.42 0.79 16 33 H 0.08 1.57 8.14 -51.92 -0.42 1.14 16 34 H 0.08 2.02 8.14 -51.93 -0.42 1.60 16 35 H 0.06 1.42 8.14 -51.93 -0.42 0.99 16 LS Contribution 298.90 15.07 4.50 4.50 Total: -1.00 -31.15 298.90 -7.69 -38.83 By element: Atomic # 1 Polarization: 11.02 SS G_CDS: -5.36 Total: 5.67 kcal Atomic # 6 Polarization: -5.99 SS G_CDS: -1.38 Total: -7.36 kcal Atomic # 7 Polarization: -37.95 SS G_CDS: 0.39 Total: -37.56 kcal Atomic # 8 Polarization: -18.69 SS G_CDS: -0.82 Total: -19.51 kcal Atomic # 14 Polarization: 20.45 SS G_CDS: -5.02 Total: 15.43 kcal Total LS contribution 4.50 Total: 4.50 kcal Total: -31.15 -7.69 -38.83 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000404150959.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -26.120 kcal (2) G-P(sol) polarization free energy of solvation -31.149 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -57.270 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.686 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.835 kcal (6) G-S(sol) free energy of system = (1) + (5) -64.955 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.96 seconds