Wall clock time and date at job start Thu Apr 9 2020 12:09:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86806 * 119.99980 * 2 1 4 4 H 1.48497 * 109.47050 * 179.97438 * 3 2 1 5 5 H 1.48495 * 109.47091 * 300.00143 * 3 2 1 6 6 H 1.48508 * 109.46813 * 59.99875 * 3 2 1 7 7 C 1.37879 * 120.00291 * 179.97438 * 2 1 3 8 8 H 1.07998 * 119.99956 * 173.55783 * 7 2 1 9 9 C 1.50695 * 119.99702 * 353.55194 * 7 2 1 10 10 C 1.53004 * 115.54756 * 85.40683 * 9 7 2 11 11 N 1.46496 * 109.47261 * 65.14139 * 10 9 7 12 12 C 1.34773 * 120.00252 * 178.27408 * 11 10 9 13 13 O 1.21284 * 120.00033 * 0.02562 * 12 11 10 14 14 C 1.50705 * 120.00064 * 179.72402 * 12 11 10 15 15 H 1.09005 * 109.86850 * 304.26539 * 14 12 11 16 16 C 1.54096 * 109.87909 * 65.27587 * 14 12 11 17 17 C 1.54814 * 104.18708 * 121.45320 * 16 14 12 18 18 C 1.54994 * 102.08995 * 20.88161 * 17 16 14 19 19 O 1.43747 * 109.87834 * 183.10773 * 14 12 11 20 20 C 1.53002 * 117.50321 * 231.07483 * 9 7 2 21 21 C 1.53002 * 117.50088 * 299.73674 * 9 7 2 22 22 H 0.97005 * 119.99714 * 5.05653 * 1 2 3 23 23 H 1.08996 * 109.47174 * 305.13977 * 10 9 7 24 24 H 1.09003 * 109.46941 * 185.14127 * 10 9 7 25 25 H 0.97006 * 119.99719 * 358.27350 * 11 10 9 26 26 H 1.08996 * 110.49030 * 240.13006 * 16 14 12 27 27 H 1.09001 * 110.48784 * 2.64464 * 16 14 12 28 28 H 1.09004 * 110.90648 * 139.07765 * 17 16 14 29 29 H 1.08999 * 110.90935 * 262.68292 * 17 16 14 30 30 H 1.09001 * 110.61980 * 81.47700 * 18 17 16 31 31 H 1.09007 * 110.61759 * 204.31623 * 18 17 16 32 32 H 1.08992 * 117.50058 * 215.00661 * 20 9 7 33 33 H 1.09008 * 117.49432 * 0.02562 * 20 9 7 34 34 H 1.08995 * 117.50280 * 359.97438 * 21 9 7 35 35 H 1.08999 * 117.49632 * 144.97376 * 21 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 3.7092 1.3464 0.0006 5 1 1.8904 2.3965 -1.2124 6 1 1.8903 2.3965 1.2126 7 6 2.0046 -1.1940 0.0005 8 1 3.0795 -1.1970 -0.1044 9 6 1.2583 -2.4949 0.1477 10 6 0.7022 -3.0869 -1.1490 11 7 1.8113 -3.4600 -2.0305 12 6 1.5601 -4.0375 -3.2220 13 8 0.4159 -4.2479 -3.5648 14 6 2.7008 -4.4156 -4.1315 15 1 3.3217 -3.5419 -4.3299 16 6 3.5485 -5.5231 -3.4761 17 6 3.4960 -6.6915 -4.4904 18 6 3.1106 -5.9642 -5.8037 19 8 2.1873 -4.9444 -5.3656 20 6 1.7471 -3.4728 1.2181 21 6 0.4419 -2.7004 1.4252 22 1 -0.4850 0.8368 -0.0740 23 1 0.0756 -2.3470 -1.6468 24 1 0.1076 -3.9711 -0.9190 25 1 2.7264 -3.2914 -1.7565 26 1 4.5752 -5.1852 -3.3362 27 1 3.1132 -5.8229 -2.5228 28 1 4.4707 -7.1705 -4.5827 29 1 2.7326 -7.4169 -4.2091 30 1 3.9893 -5.5137 -6.2652 31 1 2.6255 -6.6527 -6.4958 32 1 1.6727 -4.5378 0.9985 33 1 2.6084 -3.1749 1.8162 34 1 0.4449 -1.8949 2.1595 35 1 -0.4915 -3.2571 1.3419 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000404150959.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 12:09:33 Heat of formation + Delta-G solvation = -85.609408 kcal Electronic energy + Delta-G solvation = -17308.327640 eV Core-core repulsion = 14498.986896 eV Total energy + Delta-G solvation = -2809.340744 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 239.131 amu Computer time = 2.01 seconds Orbital eigenvalues (eV) -41.26276 -39.47951 -38.32526 -35.07280 -33.98061 -33.03020 -30.89380 -28.02550 -27.06266 -24.29234 -22.96819 -22.60850 -21.37639 -21.02131 -18.75952 -17.89789 -17.44310 -17.08682 -16.65426 -16.10693 -15.93736 -15.55743 -15.16003 -14.64817 -14.54308 -14.22132 -13.71091 -13.47511 -12.94196 -12.85444 -12.72442 -12.60560 -12.31938 -12.15293 -12.04101 -11.83334 -11.48671 -11.11069 -10.86347 -10.56275 -10.45154 -10.05297 -9.86428 -8.10413 -6.23930 1.41649 1.45235 1.54582 1.62591 2.09627 2.42591 3.08776 3.18250 3.45454 3.57212 3.82086 3.90242 4.09399 4.24211 4.31733 4.46023 4.54422 4.63840 4.71049 4.75959 4.81429 4.93192 4.99028 5.02193 5.03244 5.17396 5.26602 5.55015 5.58676 5.65444 5.77788 5.85896 6.35751 6.73249 6.84886 7.34031 7.46260 8.97555 Molecular weight = 239.13amu Principal moments of inertia in cm(-1) A = 0.029087 B = 0.006263 C = 0.005834 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 962.414626 B = 4469.562845 C = 4798.575411 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.911 5.911 2 C 0.022 3.978 3 Si 0.951 3.049 4 H -0.258 1.258 5 H -0.289 1.289 6 H -0.285 1.285 7 C -0.503 4.503 8 H 0.068 0.932 9 C 0.003 3.997 10 C 0.180 3.820 11 N -0.691 5.691 12 C 0.497 3.503 13 O -0.592 6.592 14 C 0.063 3.937 15 H 0.114 0.886 16 C -0.142 4.142 17 C -0.147 4.147 18 C 0.034 3.966 19 O -0.390 6.390 20 C -0.172 4.172 21 C -0.162 4.162 22 H 0.258 0.742 23 H 0.026 0.974 24 H 0.034 0.966 25 H 0.413 0.587 26 H 0.120 0.880 27 H 0.074 0.926 28 H 0.117 0.883 29 H 0.067 0.933 30 H 0.086 0.914 31 H 0.103 0.897 32 H 0.090 0.910 33 H 0.090 0.910 34 H 0.064 0.936 35 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.783 -10.890 -5.834 17.072 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.549 5.549 2 C -0.178 4.178 3 Si 0.777 3.223 4 H -0.181 1.181 5 H -0.216 1.216 6 H -0.212 1.212 7 C -0.540 4.540 8 H 0.086 0.914 9 C 0.002 3.998 10 C 0.055 3.945 11 N -0.342 5.342 12 C 0.284 3.716 13 O -0.473 6.473 14 C 0.002 3.998 15 H 0.132 0.868 16 C -0.180 4.180 17 C -0.185 4.185 18 C -0.041 4.041 19 O -0.309 6.309 20 C -0.209 4.209 21 C -0.200 4.200 22 H 0.067 0.933 23 H 0.044 0.956 24 H 0.052 0.948 25 H 0.249 0.751 26 H 0.139 0.861 27 H 0.093 0.907 28 H 0.136 0.864 29 H 0.086 0.914 30 H 0.104 0.896 31 H 0.121 0.879 32 H 0.108 0.892 33 H 0.108 0.892 34 H 0.082 0.918 35 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges 10.630 -10.844 -6.103 16.365 hybrid contribution 0.048 1.318 0.294 1.351 sum 10.678 -9.525 -5.809 15.443 Atomic orbital electron populations 1.70122 1.07445 1.27295 1.49988 1.25751 0.95432 1.02272 0.94390 0.85618 0.79659 0.79978 0.77049 1.18135 1.21553 1.21164 1.20719 0.93290 0.89406 1.50633 0.91367 1.19066 0.99855 0.94694 0.86140 1.20564 0.87788 0.95387 0.90718 1.45741 1.11274 1.59808 1.17387 1.21306 0.90777 0.77227 0.82333 1.90641 1.25086 1.56528 1.75068 1.22751 0.91815 1.00182 0.85045 0.86841 1.23009 1.01534 0.93842 0.99599 1.23152 1.04194 0.97412 0.93707 1.23929 0.93556 0.89259 0.97369 1.88979 1.49380 1.55683 1.36824 1.23017 0.97286 0.96229 1.04366 1.22437 0.93866 1.01510 1.02174 0.93262 0.95572 0.94773 0.75073 0.86130 0.90712 0.86448 0.91446 0.89575 0.87915 0.89201 0.89201 0.91765 0.91326 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -51.99 12.91 21.45 0.28 -51.71 16 2 C 0.02 1.17 5.39 84.65 0.46 1.62 16 3 Si 0.95 41.93 29.55 68.60 2.03 43.95 16 4 H -0.26 -10.63 7.11 99.48 0.71 -9.92 16 5 H -0.29 -12.90 7.11 99.48 0.71 -12.19 16 6 H -0.29 -12.60 7.11 99.48 0.71 -11.89 16 7 C -0.50 -25.29 8.63 25.60 0.22 -25.07 16 8 H 0.07 3.26 7.82 -2.91 -0.02 3.24 16 9 C 0.00 0.15 1.38 -52.93 -0.07 0.07 16 10 C 0.18 8.38 5.50 86.38 0.48 8.85 16 11 N -0.69 -26.63 5.45 -463.06 -2.52 -29.16 16 12 C 0.50 19.56 6.95 87.66 0.61 20.17 16 13 O -0.59 -29.60 16.53 15.68 0.26 -29.34 16 14 C 0.06 1.79 3.84 30.22 0.12 1.91 16 15 H 0.11 2.72 8.14 -2.38 -0.02 2.70 16 16 C -0.14 -2.73 6.62 31.58 0.21 -2.52 16 17 C -0.15 -2.38 7.15 31.90 0.23 -2.15 16 18 C 0.03 0.66 7.72 72.66 0.56 1.22 16 19 O -0.39 -12.32 10.74 -130.26 -1.40 -13.72 16 20 C -0.17 -6.63 9.96 30.62 0.30 -6.33 16 21 C -0.16 -7.33 9.42 30.62 0.29 -7.04 16 22 H 0.26 14.24 8.32 -92.70 -0.77 13.47 16 23 H 0.03 1.45 8.14 -2.39 -0.02 1.43 16 24 H 0.03 1.58 8.09 -2.39 -0.02 1.56 16 25 H 0.41 13.58 8.37 -92.70 -0.78 12.81 16 26 H 0.12 1.51 8.14 -2.39 -0.02 1.49 16 27 H 0.07 1.60 7.69 -2.39 -0.02 1.59 16 28 H 0.12 1.09 8.14 -2.38 -0.02 1.07 16 29 H 0.07 1.24 8.14 -2.39 -0.02 1.22 16 30 H 0.09 1.22 8.14 -2.39 -0.02 1.20 16 31 H 0.10 1.72 8.14 -2.38 -0.02 1.70 16 32 H 0.09 3.05 8.14 -2.39 -0.02 3.03 16 33 H 0.09 3.29 8.14 -2.38 -0.02 3.27 16 34 H 0.06 3.14 8.14 -2.39 -0.02 3.12 16 35 H 0.07 3.01 8.14 -2.39 -0.02 2.99 16 Total: -1.00 -69.70 298.90 2.34 -67.36 By element: Atomic # 1 Polarization: 21.57 SS G_CDS: 0.30 Total: 21.87 kcal Atomic # 6 Polarization: -12.65 SS G_CDS: 3.40 Total: -9.26 kcal Atomic # 7 Polarization: -78.62 SS G_CDS: -2.25 Total: -80.87 kcal Atomic # 8 Polarization: -41.92 SS G_CDS: -1.14 Total: -43.06 kcal Atomic # 14 Polarization: 41.93 SS G_CDS: 2.03 Total: 43.95 kcal Total: -69.70 2.34 -67.36 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000404150959.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -18.248 kcal (2) G-P(sol) polarization free energy of solvation -69.697 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -87.945 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.336 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.361 kcal (6) G-S(sol) free energy of system = (1) + (5) -85.609 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.01 seconds