Wall clock time and date at job start Thu Apr 9 2020 12:09:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31410 * 1 3 3 Si 1.86802 * 120.00194 * 2 1 4 4 H 1.48498 * 109.47129 * 240.00022 * 3 2 1 5 5 H 1.48503 * 109.46955 * 359.97438 * 3 2 1 6 6 H 1.48504 * 109.46926 * 119.99847 * 3 2 1 7 7 C 1.38952 * 120.00036 * 179.97438 * 2 1 3 8 8 H 1.07996 * 120.00574 * 199.29694 * 7 2 1 9 9 N 1.37105 * 119.99641 * 19.30140 * 7 2 1 10 10 C 1.34777 * 120.00016 * 42.41442 * 9 7 2 11 11 O 1.21292 * 120.00137 * 359.97438 * 10 9 7 12 12 C 1.50699 * 119.99638 * 179.97438 * 10 9 7 13 13 C 1.53005 * 109.46911 * 179.97438 * 12 10 9 14 14 H 1.08998 * 110.45540 * 307.60474 * 13 12 10 15 15 C 1.54507 * 110.50964 * 184.99966 * 13 12 10 16 16 C 1.54472 * 104.06398 * 241.35647 * 15 13 12 17 17 O 1.44427 * 104.80414 * 336.02422 * 16 15 13 18 18 C 1.44423 * 105.27400 * 40.51244 * 17 16 15 19 19 C 1.46496 * 119.99620 * 222.41217 * 9 7 2 20 20 C 1.52999 * 117.50075 * 3.35751 * 19 9 7 21 21 C 1.52996 * 117.50051 * 294.73332 * 19 9 7 22 22 H 0.97007 * 119.99732 * 354.74831 * 1 2 3 23 23 H 1.09005 * 109.47038 * 60.00568 * 12 10 9 24 24 H 1.08991 * 109.47424 * 300.00124 * 12 10 9 25 25 H 1.08996 * 110.51122 * 0.02562 * 15 13 12 26 26 H 1.09003 * 110.50574 * 122.71145 * 15 13 12 27 27 H 1.09003 * 110.37412 * 94.85229 * 16 15 13 28 28 H 1.08999 * 110.37508 * 217.19303 * 16 15 13 29 29 H 1.09003 * 110.37147 * 200.66147 * 18 17 16 30 30 H 1.08992 * 110.37512 * 78.31889 * 18 17 16 31 31 H 1.09001 * 115.55007 * 149.06186 * 19 9 7 32 32 H 1.09004 * 117.49875 * 359.97438 * 20 19 9 33 33 H 1.09001 * 117.50284 * 145.01698 * 20 19 9 34 34 H 1.09007 * 117.49621 * 214.98285 * 21 19 9 35 35 H 1.08996 * 117.50369 * 359.97438 * 21 19 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2482 1.6177 0.0000 4 1 3.1019 1.6964 -1.2125 5 1 1.2832 2.7465 -0.0006 6 1 3.1019 1.6963 1.2126 7 6 2.0089 -1.2034 0.0005 8 1 3.0433 -1.2296 0.3096 9 7 1.3811 -2.3575 -0.3914 10 6 0.5726 -2.3520 -1.4698 11 8 0.4000 -1.3260 -2.0932 12 6 -0.1170 -3.6208 -1.9009 13 6 -0.9690 -3.3421 -3.1408 14 1 -1.6315 -2.4947 -2.9652 15 6 -1.7845 -4.5954 -3.5301 16 6 -1.2805 -4.9459 -4.9476 17 8 -0.7635 -3.7039 -5.4730 18 6 -0.0686 -3.0837 -4.3692 19 6 1.5892 -3.5966 0.3619 20 6 2.4550 -3.5209 1.6210 21 6 2.9965 -4.1968 0.3597 22 1 -0.4850 0.8366 0.0769 23 1 -0.7565 -3.9789 -1.0941 24 1 0.6303 -4.3786 -2.1358 25 1 -1.5811 -5.4133 -2.8389 26 1 -2.8501 -4.3668 -3.5492 27 1 -0.4895 -5.6940 -4.8949 28 1 -2.1037 -5.3056 -5.5649 29 1 0.0391 -2.0129 -4.5421 30 1 0.9081 -3.5463 -4.2278 31 1 0.7470 -4.2885 0.3707 32 1 2.8701 -2.5492 1.8887 33 1 2.1824 -4.1630 2.4587 34 1 3.0801 -5.2836 0.3675 35 1 3.7675 -3.6700 -0.2025 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000408208541.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 12:09:53 Heat of formation + Delta-G solvation = -67.624985 kcal Electronic energy + Delta-G solvation = -17813.287948 eV Core-core repulsion = 15004.727067 eV Total energy + Delta-G solvation = -2808.560881 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 239.131 amu Computer time = 1.22 seconds Orbital eigenvalues (eV) -40.84659 -39.79498 -37.71688 -34.97769 -34.10242 -32.77728 -30.62560 -28.43251 -26.28484 -23.79593 -23.11806 -22.75344 -21.76847 -20.60084 -18.37322 -17.81985 -17.25460 -16.68566 -16.50979 -16.33794 -15.83202 -15.51817 -15.10803 -14.63383 -14.20096 -13.79487 -13.66265 -13.00407 -12.94573 -12.79220 -12.65365 -12.41869 -12.20602 -12.15126 -12.00667 -11.70642 -11.62585 -11.45026 -11.18427 -10.73045 -10.70456 -9.85663 -8.93578 -8.18812 -5.94189 1.34485 1.43446 1.46289 2.27568 2.45636 3.01986 3.12947 3.19241 3.39107 3.71807 3.85995 3.99129 4.15036 4.21023 4.27686 4.31119 4.41371 4.45543 4.65069 4.72132 4.82281 4.88324 4.91476 4.92677 5.01501 5.10813 5.19079 5.32214 5.36335 5.47303 5.51537 5.89094 6.21291 7.06495 7.25309 7.76131 8.42937 8.89575 Molecular weight = 239.13amu Principal moments of inertia in cm(-1) A = 0.023420 B = 0.008527 C = 0.006847 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1195.249206 B = 3282.988750 C = 4088.600954 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.869 5.869 2 C 0.023 3.977 3 Si 0.966 3.034 4 H -0.283 1.283 5 H -0.289 1.289 6 H -0.257 1.257 7 C -0.357 4.357 8 H 0.075 0.925 9 N -0.448 5.448 10 C 0.461 3.539 11 O -0.582 6.582 12 C -0.108 4.108 13 C -0.099 4.099 14 H 0.052 0.948 15 C -0.142 4.142 16 C 0.039 3.961 17 O -0.405 6.405 18 C 0.064 3.936 19 C 0.046 3.954 20 C -0.175 4.175 21 C -0.180 4.180 22 H 0.257 0.743 23 H 0.094 0.906 24 H 0.103 0.897 25 H 0.104 0.896 26 H 0.080 0.920 27 H 0.075 0.925 28 H 0.110 0.890 29 H 0.064 0.936 30 H 0.060 0.940 31 H 0.129 0.871 32 H 0.078 0.922 33 H 0.117 0.883 34 H 0.126 0.874 35 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.321 -13.350 -1.613 13.451 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.504 5.504 2 C -0.183 4.183 3 Si 0.791 3.209 4 H -0.210 1.210 5 H -0.215 1.215 6 H -0.181 1.181 7 C -0.485 4.485 8 H 0.093 0.907 9 N -0.169 5.169 10 C 0.251 3.749 11 O -0.464 6.464 12 C -0.148 4.148 13 C -0.119 4.119 14 H 0.071 0.929 15 C -0.179 4.179 16 C -0.037 4.037 17 O -0.324 6.324 18 C -0.012 4.012 19 C -0.059 4.059 20 C -0.212 4.212 21 C -0.219 4.219 22 H 0.066 0.934 23 H 0.112 0.888 24 H 0.122 0.878 25 H 0.123 0.877 26 H 0.098 0.902 27 H 0.093 0.907 28 H 0.128 0.872 29 H 0.082 0.918 30 H 0.078 0.922 31 H 0.147 0.853 32 H 0.096 0.904 33 H 0.136 0.864 34 H 0.144 0.856 35 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges -0.599 -12.619 -2.201 12.823 hybrid contribution 0.347 1.444 0.393 1.536 sum -0.252 -11.175 -1.808 11.323 Atomic orbital electron populations 1.69932 1.07885 1.27454 1.45126 1.25961 0.95453 1.02351 0.94584 0.85438 0.78182 0.78576 0.78666 1.20951 1.21480 1.18138 1.19036 0.95155 0.85622 1.48687 0.90713 1.43075 1.43628 1.07021 1.23177 1.20851 0.82737 0.90506 0.80837 1.90483 1.63989 1.36005 1.55886 1.21602 0.99365 0.95867 0.98011 1.22122 0.96836 0.98641 0.94259 0.92925 1.23013 1.00317 0.96914 0.97698 1.23665 0.99298 0.86482 0.94249 1.89062 1.72799 1.35837 1.34728 1.23259 0.94902 0.97717 0.85354 1.22022 0.94862 0.90094 0.98884 1.23115 1.03874 1.02189 0.92058 1.23323 0.96895 1.00730 1.00934 0.93352 0.88791 0.87846 0.87749 0.90156 0.90687 0.87240 0.91760 0.92217 0.85331 0.90394 0.86440 0.85557 0.90993 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -53.22 11.64 21.66 0.25 -52.97 16 2 C 0.02 1.31 4.35 84.93 0.37 1.68 16 3 Si 0.97 46.49 29.60 68.60 2.03 48.52 16 4 H -0.28 -13.89 7.11 99.48 0.71 -13.18 16 5 H -0.29 -13.87 7.11 99.48 0.71 -13.16 16 6 H -0.26 -11.31 7.11 99.48 0.71 -10.60 16 7 C -0.36 -19.76 8.00 84.04 0.67 -19.09 16 8 H 0.08 4.02 7.17 -2.91 -0.02 3.99 16 9 N -0.45 -22.12 2.85 -613.14 -1.75 -23.87 16 10 C 0.46 22.99 6.79 87.66 0.60 23.58 16 11 O -0.58 -34.58 12.65 -3.07 -0.04 -34.62 16 12 C -0.11 -3.84 3.54 29.85 0.11 -3.74 16 13 C -0.10 -3.45 2.71 -9.78 -0.03 -3.48 16 14 H 0.05 2.22 7.90 -2.39 -0.02 2.20 16 15 C -0.14 -3.41 6.74 31.61 0.21 -3.19 16 16 C 0.04 0.91 7.63 72.48 0.55 1.46 16 17 O -0.40 -13.59 11.65 -148.98 -1.74 -15.33 16 18 C 0.06 2.37 6.38 72.49 0.46 2.83 16 19 C 0.05 1.71 5.88 44.99 0.26 1.98 16 20 C -0.17 -5.82 9.79 30.59 0.30 -5.52 16 21 C -0.18 -5.46 10.36 30.59 0.32 -5.14 16 22 H 0.26 15.33 8.32 -92.70 -0.77 14.56 16 23 H 0.09 3.00 7.56 -2.38 -0.02 2.98 16 24 H 0.10 3.06 7.93 -2.39 -0.02 3.04 16 25 H 0.10 1.93 7.73 -2.39 -0.02 1.91 16 26 H 0.08 1.81 8.14 -2.39 -0.02 1.79 16 27 H 0.07 1.46 8.14 -2.39 -0.02 1.44 16 28 H 0.11 2.00 8.14 -2.39 -0.02 1.99 16 29 H 0.06 2.79 7.80 -2.39 -0.02 2.77 16 30 H 0.06 2.09 7.74 -2.39 -0.02 2.08 16 31 H 0.13 3.99 6.95 -2.39 -0.02 3.98 16 32 H 0.08 3.06 6.68 -2.38 -0.02 3.04 16 33 H 0.12 3.08 8.14 -2.39 -0.02 3.06 16 34 H 0.13 2.79 8.14 -2.38 -0.02 2.77 16 35 H 0.07 2.47 8.14 -2.39 -0.02 2.45 16 Total: -1.00 -73.44 286.51 3.66 -69.79 By element: Atomic # 1 Polarization: 16.04 SS G_CDS: 1.07 Total: 17.11 kcal Atomic # 6 Polarization: -12.45 SS G_CDS: 3.83 Total: -8.63 kcal Atomic # 7 Polarization: -75.34 SS G_CDS: -1.49 Total: -76.83 kcal Atomic # 8 Polarization: -48.18 SS G_CDS: -1.77 Total: -49.95 kcal Atomic # 14 Polarization: 46.49 SS G_CDS: 2.03 Total: 48.52 kcal Total: -73.44 3.66 -69.79 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000408208541.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 2.162 kcal (2) G-P(sol) polarization free energy of solvation -73.442 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -71.280 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.655 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.787 kcal (6) G-S(sol) free energy of system = (1) + (5) -67.625 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.22 seconds