Wall clock time and date at job start Thu Apr 9 2020 12:09:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30673 * 1 3 3 Si 1.86798 * 120.00171 * 2 1 4 4 H 1.48503 * 109.47121 * 240.00217 * 3 2 1 5 5 H 1.48506 * 109.47057 * 359.97438 * 3 2 1 6 6 H 1.48493 * 109.47600 * 119.99743 * 3 2 1 7 7 C 1.40050 * 120.00089 * 179.97438 * 2 1 3 8 8 H 1.07998 * 120.00420 * 179.97438 * 7 2 1 9 9 C 1.46378 * 119.99912 * 0.02562 * 7 2 1 10 10 O 1.21685 * 119.99602 * 4.68728 * 9 7 2 11 11 N 1.34778 * 119.99899 * 184.69736 * 9 7 2 12 12 C 1.46503 * 119.99778 * 183.80655 * 11 9 7 13 13 C 1.53005 * 109.46753 * 269.99713 * 12 11 9 14 14 H 1.09000 * 110.80672 * 51.37295 * 13 12 11 15 15 C 1.54813 * 110.90402 * 175.00342 * 13 12 11 16 16 C 1.54101 * 104.18434 * 139.11523 * 15 13 12 17 17 O 1.43742 * 107.29874 * 2.02194 * 16 15 13 18 18 C 1.44376 * 106.97308 * 333.49334 * 17 16 15 19 19 C 1.46494 * 120.00088 * 3.79914 * 11 9 7 20 20 C 1.52999 * 117.50047 * 308.53964 * 19 11 9 21 21 C 1.53004 * 117.50000 * 239.87735 * 19 11 9 22 22 H 0.97003 * 119.99667 * 0.02562 * 1 2 3 23 23 H 1.08996 * 109.47010 * 149.99917 * 12 11 9 24 24 H 1.08993 * 109.47238 * 29.99193 * 12 11 9 25 25 H 1.08994 * 110.48701 * 20.43424 * 15 13 12 26 26 H 1.09001 * 110.59403 * 257.83920 * 15 13 12 27 27 H 1.09006 * 109.87041 * 242.59997 * 16 15 13 28 28 H 1.08999 * 109.87924 * 121.45274 * 16 15 13 29 29 H 1.09003 * 110.61664 * 158.55797 * 18 17 16 30 30 H 1.09001 * 110.62139 * 281.55394 * 18 17 16 31 31 H 1.09007 * 115.55106 * 94.20681 * 19 11 9 32 32 H 1.08993 * 117.50025 * 359.97438 * 20 19 11 33 33 H 1.09006 * 117.50113 * 145.02337 * 20 19 11 34 34 H 1.08997 * 117.49676 * 214.97984 * 21 19 11 35 35 H 1.08992 * 117.49756 * 359.97438 * 21 19 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3067 0.0000 0.0000 3 14 2.2408 1.6177 0.0000 4 1 3.0945 1.6964 -1.2126 5 1 1.2758 2.7465 -0.0006 6 1 3.0945 1.6965 1.2124 7 6 2.0070 -1.2129 0.0005 8 1 3.0870 -1.2129 0.0001 9 6 1.2751 -2.4805 0.0005 10 8 0.0613 -2.4822 -0.0860 11 7 1.9456 -3.6457 0.0966 12 6 1.2215 -4.9165 0.0128 13 6 0.7841 -5.3476 1.4142 14 1 0.2582 -4.5388 1.9216 15 6 -0.0918 -6.6226 1.3517 16 6 0.3945 -7.4735 2.5409 17 8 1.4063 -6.7146 3.2240 18 6 1.9978 -5.8282 2.2499 19 6 3.3984 -3.6415 0.2848 20 6 4.2338 -2.8023 -0.6841 21 6 4.2511 -4.3298 -0.7830 22 1 -0.4850 0.8401 -0.0004 23 1 1.8731 -5.6785 -0.4148 24 1 0.3427 -4.7930 -0.6200 25 1 0.0705 -7.1513 0.4125 26 1 -1.1457 -6.3699 1.4691 27 1 0.8160 -8.4109 2.1779 28 1 -0.4367 -7.6755 3.2165 29 1 2.4825 -4.9852 2.7425 30 1 2.7073 -6.3667 1.6217 31 1 3.7388 -3.7046 1.3184 32 1 3.7025 -2.2537 -1.4618 33 1 5.1241 -2.3137 -0.2881 34 1 5.1525 -4.8453 -0.4520 35 1 3.7310 -4.7861 -1.6252 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000408229219.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 12:09:57 Heat of formation + Delta-G solvation = -76.831642 kcal Electronic energy + Delta-G solvation = -17760.756065 eV Core-core repulsion = 14951.795953 eV Total energy + Delta-G solvation = -2808.960112 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 239.131 amu Computer time = -0.04 seconds Orbital eigenvalues (eV) -40.74958 -39.61972 -37.47317 -35.22437 -34.35857 -32.49116 -30.31704 -28.67474 -26.31539 -23.87559 -23.09154 -22.93289 -21.67523 -20.55605 -18.70109 -17.66238 -17.33034 -16.77662 -16.59637 -16.12211 -15.85165 -15.59625 -14.73589 -14.56481 -14.31302 -14.01375 -13.52419 -13.21566 -13.02678 -12.74160 -12.57667 -12.43968 -12.27758 -12.08213 -12.02684 -11.87372 -11.50811 -11.18043 -10.98137 -10.88602 -10.62288 -9.69560 -9.11797 -8.25063 -6.75897 1.39311 1.42385 1.53242 2.24324 2.48440 2.72724 3.00492 3.05455 3.63913 3.68055 3.83817 4.00975 4.13596 4.20558 4.23399 4.31319 4.34642 4.41650 4.69179 4.77729 4.78413 4.86114 4.89221 4.97812 5.07279 5.12266 5.25362 5.29466 5.42544 5.47313 5.88556 5.91370 6.23856 6.45028 6.94105 7.47115 8.52093 8.72085 Molecular weight = 239.13amu Principal moments of inertia in cm(-1) A = 0.028742 B = 0.007491 C = 0.006596 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 973.946604 B = 3736.962653 C = 4243.785670 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.827 5.827 2 C 0.026 3.974 3 Si 0.988 3.012 4 H -0.252 1.252 5 H -0.280 1.280 6 H -0.254 1.254 7 C -0.565 4.565 8 H 0.108 0.892 9 C 0.542 3.458 10 O -0.633 6.633 11 N -0.620 5.620 12 C 0.145 3.855 13 C -0.132 4.132 14 H 0.036 0.964 15 C -0.145 4.145 16 C 0.048 3.952 17 O -0.406 6.406 18 C 0.068 3.932 19 C 0.067 3.933 20 C -0.175 4.175 21 C -0.162 4.162 22 H 0.270 0.730 23 H 0.094 0.906 24 H 0.041 0.959 25 H 0.097 0.903 26 H 0.069 0.931 27 H 0.083 0.917 28 H 0.089 0.911 29 H 0.078 0.922 30 H 0.085 0.915 31 H 0.105 0.895 32 H 0.078 0.922 33 H 0.116 0.884 34 H 0.129 0.871 35 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.823 -10.903 0.850 14.051 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.457 5.457 2 C -0.188 4.188 3 Si 0.808 3.192 4 H -0.176 1.176 5 H -0.205 1.205 6 H -0.178 1.178 7 C -0.601 4.601 8 H 0.126 0.874 9 C 0.348 3.652 10 O -0.520 6.520 11 N -0.355 5.355 12 C 0.021 3.979 13 C -0.152 4.152 14 H 0.055 0.945 15 C -0.183 4.183 16 C -0.028 4.028 17 O -0.325 6.325 18 C -0.008 4.008 19 C -0.037 4.037 20 C -0.212 4.212 21 C -0.200 4.200 22 H 0.080 0.920 23 H 0.112 0.888 24 H 0.060 0.940 25 H 0.115 0.885 26 H 0.088 0.912 27 H 0.101 0.899 28 H 0.108 0.892 29 H 0.096 0.904 30 H 0.103 0.897 31 H 0.123 0.877 32 H 0.097 0.903 33 H 0.134 0.866 34 H 0.147 0.853 35 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges 8.057 -10.852 1.017 13.554 hybrid contribution -0.493 1.101 -0.169 1.218 sum 7.565 -9.751 0.848 12.370 Atomic orbital electron populations 1.70215 1.09577 1.28585 1.37366 1.27011 0.95383 1.04963 0.91479 0.85208 0.78342 0.75256 0.80411 1.17582 1.20471 1.17766 1.21856 0.95775 0.89369 1.53124 0.87440 1.18659 0.86339 0.84308 0.75867 1.90549 1.16617 1.87439 1.57380 1.47387 1.05878 1.04834 1.77359 1.21003 0.96149 0.86227 0.94490 1.23008 0.97156 0.97310 0.97775 0.94503 1.22928 1.00001 0.94933 1.00468 1.23297 0.91200 0.94599 0.93722 1.88799 1.53267 1.55250 1.35220 1.23532 0.94644 0.92490 0.90156 1.21461 0.79336 1.07677 0.95272 1.23221 1.01488 0.94160 1.02357 1.23387 1.01656 0.94908 1.00021 0.92007 0.88753 0.93997 0.88486 0.91241 0.89923 0.89233 0.90417 0.89736 0.87719 0.90312 0.86558 0.85319 0.89431 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.83 -51.40 11.84 21.84 0.26 -51.14 16 2 C 0.03 1.45 5.50 85.30 0.47 1.92 16 3 Si 0.99 41.15 29.56 68.60 2.03 43.18 16 4 H -0.25 -9.77 7.11 99.48 0.71 -9.06 16 5 H -0.28 -11.44 7.11 99.48 0.71 -10.73 16 6 H -0.25 -9.91 7.11 99.48 0.71 -9.20 16 7 C -0.56 -31.47 7.94 24.83 0.20 -31.27 16 8 H 0.11 5.26 4.65 -2.91 -0.01 5.25 16 9 C 0.54 31.26 7.52 86.36 0.65 31.91 16 10 O -0.63 -42.67 14.65 -4.30 -0.06 -42.73 16 11 N -0.62 -27.42 2.74 -802.88 -2.20 -29.63 16 12 C 0.14 5.49 4.75 86.38 0.41 5.90 16 13 C -0.13 -4.70 3.34 -9.49 -0.03 -4.73 16 14 H 0.04 1.68 8.14 -2.39 -0.02 1.66 16 15 C -0.15 -3.96 6.60 31.59 0.21 -3.75 16 16 C 0.05 1.16 7.70 72.35 0.56 1.72 16 17 O -0.41 -12.59 11.52 -148.98 -1.72 -14.31 16 18 C 0.07 2.06 6.52 72.67 0.47 2.54 16 19 C 0.07 2.32 5.11 44.99 0.23 2.55 16 20 C -0.17 -5.60 7.76 30.62 0.24 -5.36 16 21 C -0.16 -4.17 9.96 30.62 0.30 -3.87 16 22 H 0.27 15.38 8.29 -92.71 -0.77 14.61 16 23 H 0.09 2.80 7.50 -2.39 -0.02 2.78 16 24 H 0.04 1.84 7.48 -2.39 -0.02 1.82 16 25 H 0.10 2.18 7.86 -2.39 -0.02 2.17 16 26 H 0.07 1.97 8.14 -2.39 -0.02 1.95 16 27 H 0.08 1.55 8.14 -2.38 -0.02 1.53 16 28 H 0.09 1.94 8.14 -2.39 -0.02 1.92 16 29 H 0.08 2.52 7.73 -2.39 -0.02 2.51 16 30 H 0.08 2.11 7.93 -2.39 -0.02 2.09 16 31 H 0.11 3.36 7.73 -2.38 -0.02 3.34 16 32 H 0.08 3.06 7.02 -2.39 -0.02 3.04 16 33 H 0.12 3.09 8.14 -2.38 -0.02 3.07 16 34 H 0.13 2.38 8.14 -2.39 -0.02 2.36 16 35 H 0.09 2.32 8.11 -2.39 -0.02 2.30 16 Total: -1.00 -76.74 287.48 3.08 -73.65 By element: Atomic # 1 Polarization: 22.34 SS G_CDS: 1.08 Total: 23.42 kcal Atomic # 6 Polarization: -6.14 SS G_CDS: 3.71 Total: -2.44 kcal Atomic # 7 Polarization: -78.82 SS G_CDS: -1.94 Total: -80.77 kcal Atomic # 8 Polarization: -55.26 SS G_CDS: -1.78 Total: -57.04 kcal Atomic # 14 Polarization: 41.15 SS G_CDS: 2.03 Total: 43.18 kcal Total: -76.74 3.08 -73.65 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000408229219.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -3.177 kcal (2) G-P(sol) polarization free energy of solvation -76.739 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -79.916 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.085 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.654 kcal (6) G-S(sol) free energy of system = (1) + (5) -76.832 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = -0.03 seconds