Wall clock time and date at job start Thu Apr 9 2020 12:10:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30678 * 1 3 3 Si 1.86793 * 120.00387 * 2 1 4 4 H 1.48494 * 109.47263 * 180.02562 * 3 2 1 5 5 H 1.48501 * 109.47258 * 300.00602 * 3 2 1 6 6 H 1.48500 * 109.46991 * 60.00249 * 3 2 1 7 7 C 1.40051 * 119.99352 * 180.02562 * 2 1 3 8 8 H 1.08004 * 119.99603 * 179.97438 * 7 2 1 9 9 C 1.46374 * 120.00090 * 359.97438 * 7 2 1 10 10 O 1.21682 * 120.00177 * 0.02562 * 9 7 2 11 11 N 1.34783 * 119.99553 * 179.97438 * 9 7 2 12 12 C 1.47021 * 125.65007 * 0.02778 * 11 9 7 13 13 C 1.54320 * 107.26834 * 181.00936 * 12 11 9 14 14 C 1.55154 * 102.94515 * 22.19503 * 13 12 11 15 15 H 1.09002 * 111.00378 * 82.56929 * 14 13 12 16 16 C 1.52997 * 111.00416 * 206.38423 * 14 13 12 17 17 H 1.09001 * 110.43923 * 55.72855 * 16 14 13 18 18 C 1.54810 * 110.49041 * 293.03976 * 16 14 13 19 19 C 1.54997 * 102.09521 * 220.44611 * 18 16 14 20 20 O 1.44382 * 103.49057 * 37.01970 * 19 18 16 21 21 C 1.43748 * 106.97605 * 319.94059 * 20 19 18 22 22 C 1.47425 * 125.64331 * 179.97438 * 11 9 7 23 23 H 0.97005 * 119.99699 * 359.97438 * 1 2 3 24 24 H 1.09001 * 109.87815 * 61.59501 * 12 11 9 25 25 H 1.08997 * 110.01366 * 300.50202 * 12 11 9 26 26 H 1.09008 * 110.72283 * 263.82731 * 13 12 11 27 27 H 1.09004 * 110.87038 * 140.62886 * 13 12 11 28 28 H 1.09002 * 110.90362 * 338.64060 * 18 16 14 29 29 H 1.09001 * 110.91172 * 102.24394 * 18 16 14 30 30 H 1.08999 * 110.61336 * 278.52214 * 19 18 16 31 31 H 1.08995 * 110.61859 * 155.52273 * 19 18 16 32 32 H 1.09000 * 109.88063 * 267.08986 * 21 20 19 33 33 H 1.09003 * 110.00055 * 146.00454 * 21 20 19 34 34 H 1.08999 * 110.36494 * 37.08693 * 22 11 9 35 35 H 1.08994 * 110.36944 * 274.75540 * 22 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3068 0.0000 0.0000 3 14 2.2408 1.6176 0.0000 4 1 3.7008 1.3462 -0.0006 5 1 1.8821 2.3964 -1.2124 6 1 1.8822 2.3963 1.2125 7 6 2.0069 -1.2130 -0.0005 8 1 3.0869 -1.2130 -0.0010 9 6 1.2749 -2.4805 -0.0005 10 8 0.0581 -2.4804 -0.0005 11 7 1.9488 -3.6478 -0.0016 12 6 3.4119 -3.7926 -0.0022 13 6 3.7226 -5.3039 -0.0293 14 6 2.4220 -5.9158 -0.6136 15 1 2.4166 -5.8557 -1.7019 16 6 2.2376 -7.3608 -0.1460 17 1 2.2510 -7.4133 0.9427 18 6 3.3363 -8.2698 -0.7487 19 6 2.5382 -9.5487 -1.1089 20 8 1.2677 -9.0359 -1.5643 21 6 0.9215 -7.9425 -0.6978 22 6 1.3408 -4.9908 -0.0012 23 1 -0.4850 0.8401 0.0004 24 1 3.8290 -3.3444 0.8996 25 1 3.8340 -3.3114 -0.8844 26 1 3.9063 -5.6781 0.9779 27 1 4.5730 -5.5139 -0.6782 28 1 3.7692 -7.8173 -1.6408 29 1 4.1085 -8.4880 -0.0110 30 1 2.4048 -10.1784 -0.2292 31 1 3.0370 -10.1009 -1.9053 32 1 0.3021 -8.3024 0.1238 33 1 0.3847 -7.1775 -1.2589 34 1 0.4410 -5.0000 -0.6163 35 1 1.1083 -5.3017 1.0173 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000408322472.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 12:10:03 Heat of formation + Delta-G solvation = -115.976772 kcal Electronic energy + Delta-G solvation = -17311.609442 eV Core-core repulsion = 14500.951870 eV Total energy + Delta-G solvation = -2810.657572 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 239.131 amu Computer time = 1.08 seconds Orbital eigenvalues (eV) -40.92249 -39.65646 -37.68116 -34.70357 -34.11284 -31.22198 -30.61723 -29.18859 -27.71994 -24.78891 -23.07908 -22.57598 -21.13626 -20.83831 -18.68944 -17.69830 -17.41421 -17.02866 -16.40760 -16.12605 -15.71244 -15.46363 -14.83100 -14.42661 -14.21751 -13.87595 -13.51655 -13.19472 -13.07307 -12.95423 -12.82731 -12.72756 -12.51767 -12.24133 -11.99251 -11.83238 -11.58214 -11.46662 -11.40601 -10.98078 -10.57644 -9.91970 -9.11494 -8.33323 -6.89329 1.37836 1.38273 1.56726 2.21661 2.41137 2.84864 3.06402 3.39360 3.52179 3.69257 3.80975 3.99580 4.10586 4.30941 4.34277 4.39062 4.42060 4.59684 4.67116 4.78049 4.86610 4.89448 4.95323 4.98072 5.03083 5.11467 5.21066 5.27334 5.28925 5.41502 5.63719 5.97336 6.01498 6.39230 6.82755 7.44810 8.41564 8.63410 Molecular weight = 239.13amu Principal moments of inertia in cm(-1) A = 0.054301 B = 0.005199 C = 0.004848 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 515.517288 B = 5384.404143 C = 5774.447528 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.823 5.823 2 C 0.026 3.974 3 Si 1.001 2.999 4 H -0.245 1.245 5 H -0.267 1.267 6 H -0.266 1.266 7 C -0.564 4.564 8 H 0.087 0.913 9 C 0.548 3.452 10 O -0.635 6.635 11 N -0.656 5.656 12 C 0.110 3.890 13 C -0.107 4.107 14 C -0.077 4.077 15 H 0.074 0.926 16 C -0.102 4.102 17 H 0.098 0.902 18 C -0.139 4.139 19 C 0.038 3.962 20 O -0.407 6.407 21 C 0.045 3.955 22 C 0.113 3.887 23 H 0.275 0.725 24 H 0.052 0.948 25 H 0.050 0.950 26 H 0.091 0.909 27 H 0.106 0.894 28 H 0.079 0.921 29 H 0.107 0.893 30 H 0.072 0.928 31 H 0.105 0.895 32 H 0.065 0.935 33 H 0.066 0.934 34 H 0.032 0.968 35 H 0.048 0.952 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.955 -14.628 0.153 18.893 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.453 5.453 2 C -0.188 4.188 3 Si 0.819 3.181 4 H -0.168 1.168 5 H -0.192 1.192 6 H -0.191 1.191 7 C -0.601 4.601 8 H 0.105 0.895 9 C 0.355 3.645 10 O -0.523 6.523 11 N -0.394 5.394 12 C -0.013 4.013 13 C -0.145 4.145 14 C -0.096 4.096 15 H 0.093 0.907 16 C -0.121 4.121 17 H 0.116 0.884 18 C -0.177 4.177 19 C -0.038 4.038 20 O -0.327 6.327 21 C -0.032 4.032 22 C -0.010 4.010 23 H 0.085 0.915 24 H 0.071 0.929 25 H 0.068 0.932 26 H 0.109 0.891 27 H 0.124 0.876 28 H 0.098 0.902 29 H 0.125 0.875 30 H 0.090 0.910 31 H 0.123 0.877 32 H 0.084 0.916 33 H 0.085 0.915 34 H 0.051 0.949 35 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges 10.976 -14.554 -0.019 18.229 hybrid contribution -0.363 1.038 0.144 1.109 sum 10.613 -13.516 0.125 17.185 Atomic orbital electron populations 1.70212 1.09667 1.28999 1.36410 1.27064 0.95559 1.05113 0.91113 0.84933 0.79352 0.75087 0.78686 1.16821 1.19207 1.19117 1.21434 0.94605 0.89651 1.54388 0.89471 1.18481 0.86367 0.83482 0.76205 1.90543 1.16259 1.87436 1.58066 1.48553 1.07248 1.04722 1.78847 1.21866 0.80914 0.97973 1.00525 1.22672 0.97275 0.91562 1.02958 1.22290 0.94638 0.92997 0.99685 0.90729 1.22470 0.94964 0.93039 1.01641 0.88362 1.23182 0.97712 0.94443 1.02329 1.23803 0.82920 0.96302 1.00739 1.88844 1.39663 1.49024 1.55132 1.23288 0.97231 0.88824 0.93878 1.22035 0.96454 0.83638 0.98906 0.91482 0.92916 0.93156 0.89079 0.87588 0.90193 0.87466 0.90956 0.87664 0.91643 0.91520 0.94941 0.93391 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.82 -51.75 11.83 21.84 0.26 -51.50 16 2 C 0.03 1.50 5.50 85.30 0.47 1.97 16 3 Si 1.00 41.56 29.56 68.60 2.03 43.58 16 4 H -0.25 -9.35 7.11 99.48 0.71 -8.65 16 5 H -0.27 -10.65 7.11 99.48 0.71 -9.95 16 6 H -0.27 -10.58 7.11 99.48 0.71 -9.88 16 7 C -0.56 -33.09 9.06 24.83 0.23 -32.87 16 8 H 0.09 4.61 7.16 -2.91 -0.02 4.59 16 9 C 0.55 33.61 7.78 86.36 0.67 34.29 16 10 O -0.64 -44.93 15.27 -4.29 -0.07 -44.99 16 11 N -0.66 -31.49 3.33 -816.89 -2.72 -34.21 16 12 C 0.11 3.95 6.05 86.73 0.52 4.48 16 13 C -0.11 -2.56 6.06 31.78 0.19 -2.37 16 14 C -0.08 -2.10 2.24 -9.40 -0.02 -2.13 16 15 H 0.07 2.18 8.14 -2.39 -0.02 2.16 16 16 C -0.10 -2.14 2.54 -9.80 -0.02 -2.16 16 17 H 0.10 1.84 8.14 -2.39 -0.02 1.82 16 18 C -0.14 -2.11 6.35 31.90 0.20 -1.91 16 19 C 0.04 0.63 7.72 72.67 0.56 1.19 16 20 O -0.41 -10.36 11.52 -148.98 -1.72 -12.08 16 21 C 0.04 1.10 7.09 72.36 0.51 1.62 16 22 C 0.11 4.50 5.82 86.85 0.51 5.01 16 23 H 0.28 15.55 8.29 -92.70 -0.77 14.78 16 24 H 0.05 1.87 8.14 -2.39 -0.02 1.85 16 25 H 0.05 1.81 8.14 -2.39 -0.02 1.79 16 26 H 0.09 1.84 8.04 -2.38 -0.02 1.82 16 27 H 0.11 1.90 8.14 -2.38 -0.02 1.88 16 28 H 0.08 1.24 7.87 -2.39 -0.02 1.23 16 29 H 0.11 1.09 8.14 -2.39 -0.02 1.07 16 30 H 0.07 0.99 8.14 -2.39 -0.02 0.97 16 31 H 0.11 1.39 8.14 -2.39 -0.02 1.37 16 32 H 0.07 1.49 8.14 -2.39 -0.02 1.47 16 33 H 0.07 1.92 7.12 -2.39 -0.02 1.91 16 34 H 0.03 1.46 7.71 -2.39 -0.02 1.44 16 35 H 0.05 1.85 8.04 -2.39 -0.02 1.83 16 Total: -1.00 -81.25 286.55 2.67 -78.58 By element: Atomic # 1 Polarization: 12.43 SS G_CDS: 1.06 Total: 13.49 kcal Atomic # 6 Polarization: 3.30 SS G_CDS: 3.82 Total: 7.12 kcal Atomic # 7 Polarization: -83.24 SS G_CDS: -2.46 Total: -85.70 kcal Atomic # 8 Polarization: -55.29 SS G_CDS: -1.78 Total: -57.07 kcal Atomic # 14 Polarization: 41.56 SS G_CDS: 2.03 Total: 43.58 kcal Total: -81.25 2.67 -78.58 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000408322472.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -37.399 kcal (2) G-P(sol) polarization free energy of solvation -81.248 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -118.646 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.670 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.578 kcal (6) G-S(sol) free energy of system = (1) + (5) -115.977 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.08 seconds