Wall clock time and date at job start Thu Apr 9 2020 12:10:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30674 * 1 3 3 Si 1.86796 * 119.99885 * 2 1 4 4 H 1.48506 * 109.47393 * 269.99767 * 3 2 1 5 5 H 1.48494 * 109.47332 * 29.99853 * 3 2 1 6 6 H 1.48501 * 109.47048 * 150.00010 * 3 2 1 7 7 C 1.40042 * 119.99645 * 180.02562 * 2 1 3 8 8 H 1.08002 * 120.00021 * 179.97438 * 7 2 1 9 9 C 1.46375 * 120.00353 * 359.97438 * 7 2 1 10 10 O 1.21683 * 119.99918 * 0.02562 * 9 7 2 11 11 N 1.34777 * 119.99876 * 179.97438 * 9 7 2 12 12 C 1.46499 * 119.99665 * 179.72458 * 11 9 7 13 13 H 1.09004 * 109.54385 * 325.45130 * 12 11 9 14 14 C 1.53171 * 109.54421 * 85.72248 * 12 11 9 15 15 C 1.53090 * 109.16533 * 62.88754 * 14 12 11 16 16 O 1.42904 * 109.41774 * 57.60771 * 15 14 12 17 17 C 1.42910 * 114.09405 * 298.84814 * 16 15 14 18 18 H 1.08998 * 109.47966 * 301.17109 * 17 16 15 19 19 C 1.53004 * 109.47737 * 181.13962 * 17 16 15 20 20 C 1.52995 * 117.50064 * 128.80264 * 19 17 16 21 21 C 1.52995 * 117.50150 * 60.13983 * 19 17 16 22 22 C 1.53085 * 109.41763 * 61.15792 * 17 16 15 23 23 H 0.97004 * 119.99544 * 0.02562 * 1 2 3 24 24 H 0.97001 * 120.00485 * 0.02562 * 11 9 7 25 25 H 1.09001 * 109.52523 * 182.79198 * 14 12 11 26 26 H 1.09000 * 109.52406 * 302.98197 * 14 12 11 27 27 H 1.08999 * 109.47857 * 297.62881 * 15 14 12 28 28 H 1.09002 * 109.49392 * 177.60233 * 15 14 12 29 29 H 1.08998 * 115.54622 * 274.47252 * 19 17 16 30 30 H 1.09006 * 117.49845 * 359.97438 * 20 19 17 31 31 H 1.08996 * 117.49853 * 145.01989 * 20 19 17 32 32 H 1.09002 * 117.50608 * 214.98008 * 21 19 17 33 33 H 1.09002 * 117.49900 * 359.97438 * 21 19 17 34 34 H 1.08997 * 109.52653 * 182.48414 * 22 17 16 35 35 H 1.09004 * 109.52795 * 62.29183 * 22 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3067 0.0000 0.0000 3 14 2.2407 1.6177 0.0000 4 1 2.4883 2.0464 -1.4001 5 1 1.4382 2.6526 0.7000 6 1 3.5382 1.4402 0.7000 7 6 2.0069 -1.2128 -0.0005 8 1 3.0869 -1.2129 -0.0010 9 6 1.2750 -2.4805 -0.0005 10 8 0.0582 -2.4805 -0.0005 11 7 1.9489 -3.6477 -0.0016 12 6 1.2164 -4.9164 0.0045 13 1 0.3042 -4.8079 0.5914 14 6 0.8598 -5.3091 -1.4324 15 6 2.1491 -5.5343 -2.2265 16 8 2.9325 -6.5426 -1.5846 17 6 3.3353 -6.2097 -0.2545 18 1 3.9186 -5.2891 -0.2710 19 6 4.1872 -7.3436 0.3195 20 6 5.5392 -6.9714 0.9313 21 6 5.4818 -7.6963 -0.4156 22 6 2.0936 -6.0117 0.6188 23 1 -0.4850 0.8401 -0.0004 24 1 2.9189 -3.6477 -0.0020 25 1 0.2722 -6.2271 -1.4240 26 1 0.2817 -4.5096 -1.8958 27 1 2.7170 -4.6049 -2.2688 28 1 1.9017 -5.8555 -3.2383 29 1 3.6329 -8.1600 0.7824 30 1 5.8220 -5.9187 0.9247 31 1 5.8745 -7.5432 1.7966 32 1 5.7795 -8.7447 -0.4360 33 1 5.7265 -7.1208 -1.3084 34 1 2.3977 -5.7146 1.6224 35 1 1.5308 -6.9439 0.6686 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000408325395.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 12:10:20 Heat of formation + Delta-G solvation = -93.435618 kcal Electronic energy + Delta-G solvation = -17535.623970 eV Core-core repulsion = 14725.943856 eV Total energy + Delta-G solvation = -2809.680114 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 239.131 amu Computer time = 1.66 seconds Orbital eigenvalues (eV) -41.06247 -39.04401 -37.54515 -35.66167 -34.53159 -32.07441 -31.87667 -28.36903 -26.06027 -24.77179 -23.09812 -22.58911 -21.65772 -20.22383 -19.27387 -17.60958 -17.38554 -16.97996 -16.55455 -15.94738 -15.83559 -15.54959 -15.35117 -14.51747 -14.34379 -13.71144 -13.69338 -13.26491 -12.94311 -12.85288 -12.77175 -12.60603 -12.36038 -12.25747 -12.03412 -11.78350 -11.54768 -11.22644 -10.94713 -10.92841 -10.36523 -9.85938 -9.47514 -8.29825 -6.86680 1.39082 1.40363 1.55538 2.23474 2.46881 2.52972 3.05993 3.23783 3.55286 3.66501 3.80875 3.97364 4.04198 4.09831 4.15370 4.26324 4.33074 4.43408 4.65842 4.69260 4.84559 4.87614 4.95168 5.02909 5.07527 5.12104 5.17192 5.30543 5.31039 5.34247 5.86441 6.20904 6.26471 6.28167 6.86148 7.52698 8.49176 8.67061 Molecular weight = 239.13amu Principal moments of inertia in cm(-1) A = 0.031121 B = 0.006241 C = 0.005669 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 899.488484 B = 4485.694044 C = 4937.976672 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.821 5.821 2 C 0.030 3.970 3 Si 0.996 3.004 4 H -0.262 1.262 5 H -0.273 1.273 6 H -0.249 1.249 7 C -0.575 4.575 8 H 0.085 0.915 9 C 0.541 3.459 10 O -0.630 6.630 11 N -0.747 5.747 12 C 0.146 3.854 13 H 0.046 0.954 14 C -0.158 4.158 15 C 0.073 3.927 16 O -0.381 6.381 17 C 0.122 3.878 18 H 0.050 0.950 19 C -0.159 4.159 20 C -0.166 4.166 21 C -0.166 4.166 22 C -0.138 4.138 23 H 0.274 0.726 24 H 0.389 0.611 25 H 0.084 0.916 26 H 0.043 0.957 27 H 0.040 0.960 28 H 0.109 0.891 29 H 0.118 0.882 30 H 0.093 0.907 31 H 0.115 0.885 32 H 0.109 0.891 33 H 0.087 0.913 34 H 0.081 0.919 35 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.083 -12.124 -0.223 16.428 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.451 5.451 2 C -0.185 4.185 3 Si 0.815 3.185 4 H -0.187 1.187 5 H -0.198 1.198 6 H -0.173 1.173 7 C -0.611 4.611 8 H 0.103 0.897 9 C 0.345 3.655 10 O -0.517 6.517 11 N -0.401 5.401 12 C 0.041 3.959 13 H 0.065 0.935 14 C -0.197 4.197 15 C -0.003 4.003 16 O -0.300 6.300 17 C 0.064 3.936 18 H 0.068 0.932 19 C -0.178 4.178 20 C -0.203 4.203 21 C -0.202 4.202 22 C -0.176 4.176 23 H 0.084 0.916 24 H 0.223 0.777 25 H 0.103 0.897 26 H 0.062 0.938 27 H 0.058 0.942 28 H 0.127 0.873 29 H 0.136 0.864 30 H 0.111 0.889 31 H 0.133 0.867 32 H 0.127 0.873 33 H 0.106 0.894 34 H 0.100 0.900 35 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges 10.085 -12.234 -0.301 15.858 hybrid contribution -0.008 1.169 0.066 1.171 sum 10.077 -11.065 -0.235 14.968 Atomic orbital electron populations 1.70190 1.09488 1.28879 1.36538 1.26936 0.95492 1.04859 0.91203 0.85048 0.78798 0.75226 0.79406 1.18650 1.19786 1.17262 1.21422 0.94609 0.90242 1.54869 0.89731 1.18555 0.86832 0.84272 0.75847 1.90550 1.16139 1.87883 1.57093 1.45908 1.08768 1.04507 1.80932 1.20659 0.95344 0.84408 0.95532 0.93546 1.22455 0.98943 1.01215 0.97088 1.22435 0.90305 0.91206 0.96374 1.87879 1.70839 1.43471 1.27829 1.21596 0.93552 0.96314 0.82095 0.93171 1.22179 0.90003 1.00261 1.05317 1.23118 0.97769 1.01809 0.97578 1.22896 0.99639 1.01959 0.95751 1.22346 0.96971 0.98428 0.99816 0.91613 0.77699 0.89704 0.93811 0.94209 0.87338 0.86426 0.88889 0.86674 0.87283 0.89407 0.90027 0.88904 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.82 -50.52 11.83 21.83 0.26 -50.26 16 2 C 0.03 1.69 5.50 85.30 0.47 2.16 16 3 Si 1.00 41.01 29.56 68.60 2.03 43.04 16 4 H -0.26 -10.29 7.11 99.48 0.71 -9.58 16 5 H -0.27 -10.87 7.11 99.48 0.71 -10.16 16 6 H -0.25 -9.54 7.11 99.48 0.71 -8.83 16 7 C -0.57 -32.65 9.54 24.83 0.24 -32.41 16 8 H 0.08 4.32 7.85 -2.91 -0.02 4.30 16 9 C 0.54 31.37 7.72 86.36 0.67 32.03 16 10 O -0.63 -42.23 14.68 -4.29 -0.06 -42.30 16 11 N -0.75 -33.49 4.39 -446.26 -1.96 -35.45 16 12 C 0.15 5.72 2.82 45.11 0.13 5.85 16 13 H 0.05 2.12 7.57 -2.38 -0.02 2.10 16 14 C -0.16 -5.71 5.81 30.68 0.18 -5.53 16 15 C 0.07 2.30 6.68 72.01 0.48 2.78 16 16 O -0.38 -11.25 10.32 -148.98 -1.54 -12.78 16 17 C 0.12 3.28 2.66 30.62 0.08 3.36 16 18 H 0.05 1.43 6.47 -2.39 -0.02 1.42 16 19 C -0.16 -3.38 5.39 -10.80 -0.06 -3.44 16 20 C -0.17 -2.94 10.18 30.62 0.31 -2.63 16 21 C -0.17 -3.10 10.16 30.62 0.31 -2.79 16 22 C -0.14 -4.00 5.06 30.68 0.16 -3.85 16 23 H 0.27 15.27 8.29 -92.71 -0.77 14.50 16 24 H 0.39 15.42 7.05 -92.71 -0.65 14.77 16 25 H 0.08 2.69 8.14 -2.39 -0.02 2.67 16 26 H 0.04 1.89 8.14 -2.39 -0.02 1.87 16 27 H 0.04 1.36 7.75 -2.39 -0.02 1.34 16 28 H 0.11 2.90 8.14 -2.39 -0.02 2.88 16 29 H 0.12 2.26 8.11 -2.39 -0.02 2.24 16 30 H 0.09 1.73 8.05 -2.38 -0.02 1.71 16 31 H 0.11 1.61 8.14 -2.39 -0.02 1.59 16 32 H 0.11 1.66 8.14 -2.39 -0.02 1.65 16 33 H 0.09 1.81 8.14 -2.39 -0.02 1.79 16 34 H 0.08 2.29 8.14 -2.39 -0.02 2.27 16 35 H 0.09 2.40 8.14 -2.38 -0.02 2.38 16 Total: -1.00 -73.44 289.89 2.12 -71.33 By element: Atomic # 1 Polarization: 30.46 SS G_CDS: 0.43 Total: 30.89 kcal Atomic # 6 Polarization: -7.43 SS G_CDS: 2.96 Total: -4.47 kcal Atomic # 7 Polarization: -84.01 SS G_CDS: -1.70 Total: -85.71 kcal Atomic # 8 Polarization: -53.48 SS G_CDS: -1.60 Total: -55.08 kcal Atomic # 14 Polarization: 41.01 SS G_CDS: 2.03 Total: 43.04 kcal Total: -73.44 2.12 -71.33 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000408325395.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -22.110 kcal (2) G-P(sol) polarization free energy of solvation -73.441 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -95.551 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.116 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.326 kcal (6) G-S(sol) free energy of system = (1) + (5) -93.436 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.66 seconds