Wall clock time and date at job start Thu Apr 9 2020 12:09:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.42903 * 113.99180 * 2 1 4 4 H 1.08996 * 112.89121 * 338.15429 * 3 2 1 5 5 C 1.53952 * 113.66125 * 109.50965 * 3 2 1 6 6 C 1.53950 * 87.29848 * 89.73496 * 5 3 2 7 7 H 1.08991 * 113.66796 * 139.30265 * 6 5 3 8 8 N 1.46501 * 113.65607 * 270.26343 * 6 5 3 9 9 C 1.34775 * 119.99911 * 255.48998 * 8 6 5 10 10 O 1.21692 * 119.99963 * 0.02562 * 9 8 6 11 11 C 1.46378 * 120.00292 * 180.02562 * 9 8 6 12 12 H 1.07999 * 119.99554 * 6.74860 * 11 9 8 13 13 C 1.40055 * 120.00222 * 186.75319 * 11 9 8 14 14 N 1.30665 * 120.00054 * 6.79258 * 13 11 9 15 15 Si 1.86793 * 119.99781 * 186.79081 * 13 11 9 16 16 H 1.48502 * 109.47413 * 265.01527 * 15 13 11 17 17 H 1.48504 * 109.47351 * 25.01747 * 15 13 11 18 18 H 1.48496 * 109.47104 * 145.01895 * 15 13 11 19 19 C 1.52902 * 86.78084 * 24.73286 * 6 5 3 20 20 C 1.52917 * 121.14233 * 209.37997 * 19 6 5 21 21 C 1.53950 * 86.78500 * 209.38091 * 20 19 6 22 22 C 1.52913 * 121.13886 * 100.81817 * 19 6 5 23 23 H 1.08998 * 109.47549 * 60.00356 * 1 2 3 24 24 H 1.09006 * 109.46738 * 179.97438 * 1 2 3 25 25 H 1.09004 * 109.47378 * 299.99570 * 1 2 3 26 26 H 1.08998 * 113.58056 * 335.12268 * 5 3 2 27 27 H 1.09008 * 113.57767 * 204.33446 * 5 3 2 28 28 H 0.97003 * 120.00081 * 75.50168 * 8 6 5 29 29 H 0.96994 * 120.00068 * 180.02562 * 14 13 11 30 30 H 1.09005 * 113.65854 * 323.85514 * 20 19 6 31 31 H 1.08997 * 113.65700 * 94.90831 * 20 19 6 32 32 H 1.09000 * 113.57898 * 270.13707 * 21 20 19 33 33 H 1.08994 * 113.64902 * 139.34936 * 21 20 19 34 34 H 1.08999 * 113.66393 * 265.09869 * 22 19 6 35 35 H 1.09006 * 113.65798 * 36.15662 * 22 19 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0101 1.3056 0.0000 4 1 1.3310 2.0719 -0.3736 5 6 2.6915 1.6786 1.3291 6 6 3.9819 1.0653 0.7556 7 1 4.8792 1.6393 0.9862 8 7 4.1308 -0.3639 1.0411 9 6 4.9980 -0.7753 1.9872 10 8 5.6569 0.0404 2.6047 11 6 5.1473 -2.2033 2.2722 12 1 4.6463 -2.9327 1.6530 13 6 5.9397 -2.6237 3.3478 14 7 6.4373 -1.7439 4.1758 15 14 6.2851 -4.4422 3.5986 16 1 5.3039 -5.0044 4.5612 17 1 6.1668 -5.1524 2.2997 18 1 7.6591 -4.6158 4.1343 19 6 3.4028 1.3574 -0.6290 20 6 3.7587 0.4868 -1.8348 21 6 3.5446 1.7444 -2.6965 22 6 3.8605 2.5720 -1.4374 23 1 -0.3634 0.5138 -0.8900 24 1 -0.3633 -1.0277 -0.0005 25 1 -0.3634 0.5138 0.8900 26 1 2.2961 1.1375 2.1888 27 1 2.7576 2.7534 1.4987 28 1 3.6054 -1.0141 0.5490 29 1 6.9864 -2.0351 4.9205 30 1 4.7890 0.1309 -1.8285 31 1 3.0364 -0.3057 -2.0304 32 1 2.5201 1.8618 -3.0496 33 1 4.2817 1.8607 -3.4910 34 1 3.2197 3.4453 -1.3156 35 1 4.9195 2.8021 -1.3195 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000334609549.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 12:09:05 Heat of formation + Delta-G solvation = -40.356109 kcal Electronic energy + Delta-G solvation = -17710.408875 eV Core-core repulsion = 14903.030461 eV Total energy + Delta-G solvation = -2807.378414 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 239.131 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -40.52360 -36.85202 -36.77671 -34.08786 -32.38944 -30.91670 -26.80125 -26.29509 -25.31320 -24.38790 -23.57298 -20.78771 -19.39004 -18.01753 -17.17450 -16.14204 -15.55319 -15.42359 -15.12649 -14.76313 -14.18811 -13.94694 -13.32266 -12.98983 -12.34659 -12.21143 -12.12309 -11.89689 -11.78568 -11.51546 -11.10636 -10.99786 -10.89043 -10.72691 -10.38078 -10.19677 -10.05394 -9.85342 -9.58670 -9.05886 -8.76523 -7.50715 -7.30992 -6.13620 -4.53587 3.18529 3.25741 3.30379 3.70429 4.17651 4.59098 4.64277 4.83941 4.90886 4.97094 5.11293 5.25496 5.37528 5.40819 5.46286 5.57083 5.65983 5.73647 5.82056 5.98795 6.00572 6.04763 6.10430 6.23231 6.35411 6.51085 6.58546 6.66024 6.83298 7.45700 7.51948 8.10186 8.29802 8.47831 9.11194 9.71201 10.69282 10.89066 Molecular weight = 239.13amu Principal moments of inertia in cm(-1) A = 0.029546 B = 0.006762 C = 0.006390 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 947.435809 B = 4139.833649 C = 4381.103510 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.034 3.966 2 O -0.358 6.358 3 C 0.093 3.907 4 H 0.064 0.936 5 C -0.180 4.180 6 C 0.164 3.836 7 H 0.085 0.915 8 N -0.737 5.737 9 C 0.559 3.441 10 O -0.586 6.586 11 C -0.545 4.545 12 H 0.067 0.933 13 C 0.089 3.911 14 N -0.772 5.772 15 Si 0.905 3.095 16 H -0.274 1.274 17 H -0.264 1.264 18 H -0.279 1.279 19 C -0.121 4.121 20 C -0.116 4.116 21 C -0.141 4.141 22 C -0.106 4.106 23 H 0.036 0.964 24 H 0.084 0.916 25 H 0.039 0.961 26 H 0.076 0.924 27 H 0.083 0.917 28 H 0.387 0.613 29 H 0.267 0.733 30 H 0.084 0.916 31 H 0.071 0.929 32 H 0.073 0.927 33 H 0.064 0.936 34 H 0.065 0.935 35 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.710 5.176 -10.809 15.424 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.063 4.063 2 O -0.276 6.276 3 C 0.035 3.965 4 H 0.082 0.918 5 C -0.219 4.219 6 C 0.056 3.944 7 H 0.103 0.897 8 N -0.390 5.390 9 C 0.363 3.637 10 O -0.469 6.469 11 C -0.582 4.582 12 H 0.085 0.915 13 C -0.130 4.130 14 N -0.401 5.401 15 Si 0.730 3.270 16 H -0.199 1.199 17 H -0.189 1.189 18 H -0.205 1.205 19 C -0.122 4.122 20 C -0.153 4.153 21 C -0.178 4.178 22 C -0.144 4.144 23 H 0.054 0.946 24 H 0.103 0.897 25 H 0.057 0.943 26 H 0.094 0.906 27 H 0.102 0.898 28 H 0.219 0.781 29 H 0.078 0.922 30 H 0.103 0.897 31 H 0.089 0.911 32 H 0.092 0.908 33 H 0.083 0.917 34 H 0.084 0.916 35 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges -8.984 5.623 -10.170 14.689 hybrid contribution -0.450 -0.943 0.006 1.044 sum -9.433 4.680 -10.165 14.636 Atomic orbital electron populations 1.22746 0.81599 1.02520 0.99409 1.87902 1.18894 1.26315 1.94452 1.22730 0.92522 0.84636 0.96657 0.91804 1.24031 0.99698 1.00637 0.97582 1.21056 0.96074 0.86277 0.91005 0.89668 1.45727 1.46276 1.03696 1.43276 1.18209 0.78012 0.89807 0.77661 1.90574 1.48562 1.55876 1.51921 1.20879 1.31869 0.90674 1.14806 0.91464 1.25678 0.93965 0.98673 0.94665 1.69996 1.24994 1.34474 1.10595 0.86400 0.78033 0.83457 0.79093 1.19934 1.18850 1.20454 1.23176 0.95670 0.98336 0.94998 1.22494 1.02135 0.96296 0.94376 1.22857 1.01063 0.97454 0.96464 1.22549 1.01601 0.95328 0.94899 0.94583 0.89724 0.94265 0.90569 0.89824 0.78076 0.92205 0.89741 0.91068 0.90809 0.91735 0.91626 0.89320 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.40 10.86 101.05 1.10 1.50 16 2 O -0.36 -5.65 9.10 -35.23 -0.32 -5.97 16 3 C 0.09 1.39 4.15 -26.28 -0.11 1.28 16 4 H 0.06 0.81 7.90 -51.93 -0.41 0.40 16 5 C -0.18 -3.16 7.71 -25.75 -0.20 -3.36 16 6 C 0.16 3.32 4.08 -67.48 -0.28 3.05 16 7 H 0.09 1.93 7.54 -51.93 -0.39 1.53 16 8 N -0.74 -17.49 4.94 -54.78 -0.27 -17.76 16 9 C 0.56 16.48 7.72 -12.99 -0.10 16.38 16 10 O -0.59 -19.46 14.75 5.20 0.08 -19.38 16 11 C -0.55 -15.97 9.53 -35.63 -0.34 -16.31 16 12 H 0.07 1.83 7.86 -52.49 -0.41 1.42 16 13 C 0.09 2.57 5.48 -17.37 -0.10 2.47 16 14 N -0.77 -23.72 11.91 55.55 0.66 -23.05 16 15 Si 0.91 20.72 29.56 -169.99 -5.03 15.70 16 16 H -0.27 -6.09 7.11 56.52 0.40 -5.69 16 17 H -0.26 -5.87 7.11 56.52 0.40 -5.47 16 18 H -0.28 -6.25 7.11 56.52 0.40 -5.85 16 19 C -0.12 -1.87 0.83 -154.71 -0.13 -2.00 16 20 C -0.12 -1.69 7.30 -26.28 -0.19 -1.88 16 21 C -0.14 -1.66 8.08 -25.75 -0.21 -1.86 16 22 C -0.11 -1.34 7.84 -26.28 -0.21 -1.55 16 23 H 0.04 0.35 8.14 -51.93 -0.42 -0.07 16 24 H 0.08 0.89 8.14 -51.93 -0.42 0.46 16 25 H 0.04 0.44 8.14 -51.93 -0.42 0.02 16 26 H 0.08 1.51 8.14 -51.93 -0.42 1.09 16 27 H 0.08 1.29 8.14 -51.92 -0.42 0.86 16 28 H 0.39 8.64 7.58 -40.82 -0.31 8.33 16 29 H 0.27 7.44 8.29 -40.82 -0.34 7.10 16 30 H 0.08 1.34 8.14 -51.93 -0.42 0.92 16 31 H 0.07 1.05 7.83 -51.93 -0.41 0.65 16 32 H 0.07 0.79 8.14 -51.93 -0.42 0.37 16 33 H 0.06 0.69 8.14 -51.93 -0.42 0.27 16 34 H 0.07 0.72 8.14 -51.93 -0.42 0.30 16 35 H 0.09 1.14 8.14 -51.93 -0.42 0.71 16 LS Contribution 293.59 15.07 4.42 4.42 Total: -1.00 -34.49 293.59 -6.50 -40.99 By element: Atomic # 1 Polarization: 12.63 SS G_CDS: -5.29 Total: 7.34 kcal Atomic # 6 Polarization: -1.53 SS G_CDS: -0.76 Total: -2.28 kcal Atomic # 7 Polarization: -41.20 SS G_CDS: 0.39 Total: -40.81 kcal Atomic # 8 Polarization: -25.11 SS G_CDS: -0.24 Total: -25.36 kcal Atomic # 14 Polarization: 20.72 SS G_CDS: -5.03 Total: 15.70 kcal Total LS contribution 4.42 Total: 4.42 kcal Total: -34.49 -6.50 -40.99 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000334609549.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 0.633 kcal (2) G-P(sol) polarization free energy of solvation -34.488 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -33.855 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.501 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.989 kcal (6) G-S(sol) free energy of system = (1) + (5) -40.356 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds