Wall clock time and date at job start Thu Apr 9 2020 12:09:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45212 * 1 3 3 C 1.34224 * 117.00092 * 2 1 4 4 O 1.20829 * 120.00085 * 359.97438 * 3 2 1 5 5 C 1.50698 * 120.00183 * 180.02562 * 3 2 1 6 6 H 1.09003 * 115.56049 * 34.28869 * 5 3 2 7 7 C 1.53036 * 117.50138 * 248.58476 * 5 3 2 8 8 C 1.52814 * 117.50358 * 179.97438 * 5 3 2 9 9 C 1.53187 * 117.71480 * 359.86013 * 8 5 3 10 10 C 1.53356 * 108.76551 * 158.87631 * 9 8 5 11 11 N 1.46837 * 108.81506 * 51.30845 * 10 9 8 12 12 C 1.36928 * 120.38177 * 123.10701 * 11 10 9 13 13 H 1.08000 * 120.00320 * 332.90852 * 12 11 10 14 14 C 1.38813 * 120.00356 * 152.90323 * 12 11 10 15 15 N 1.31621 * 119.99983 * 333.81152 * 14 12 11 16 16 Si 1.86800 * 120.00071 * 153.80713 * 14 12 11 17 17 H 1.48498 * 109.47159 * 180.02562 * 16 14 12 18 18 H 1.48505 * 109.47066 * 299.99957 * 16 14 12 19 19 H 1.48493 * 109.47234 * 60.00189 * 16 14 12 20 20 C 1.46841 * 119.24108 * 303.37902 * 11 10 9 21 21 C 1.52871 * 109.07852 * 56.58169 * 20 11 10 22 22 H 1.09002 * 109.46653 * 299.99952 * 1 2 3 23 23 H 1.09000 * 109.46729 * 59.99852 * 1 2 3 24 24 H 1.08999 * 109.46966 * 180.02562 * 1 2 3 25 25 H 1.08998 * 117.50130 * 145.04346 * 7 5 3 26 26 H 1.08990 * 117.50530 * 359.97438 * 7 5 3 27 27 H 1.08993 * 109.58583 * 39.09568 * 9 8 5 28 28 H 1.09001 * 109.58679 * 278.66062 * 9 8 5 29 29 H 1.09006 * 109.57815 * 291.50971 * 10 9 8 30 30 H 1.08993 * 109.68979 * 171.17362 * 10 9 8 31 31 H 0.96999 * 119.99555 * 354.42209 * 15 14 12 32 32 H 1.08996 * 109.58705 * 176.42002 * 20 11 10 33 33 H 1.09000 * 109.58107 * 296.82570 * 20 11 10 34 34 H 1.08995 * 109.67088 * 189.04819 * 21 20 11 35 35 H 1.09001 * 109.56178 * 68.72657 * 21 20 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4521 0.0000 0.0000 3 6 2.0615 1.1959 0.0000 4 8 1.4035 2.2093 -0.0005 5 6 3.5664 1.2748 -0.0006 6 1 4.0784 0.4882 -0.5549 7 6 4.2467 1.8065 1.2630 8 6 4.2002 2.6653 -0.0012 9 6 3.2617 3.8760 -0.0044 10 6 4.0289 5.0964 0.5188 11 7 5.2867 5.2212 -0.2287 12 6 5.5788 6.3755 -0.9049 13 1 4.7803 7.0051 -1.2688 14 6 6.9013 6.7367 -1.1225 15 7 7.8412 6.3198 -0.3008 16 14 7.3472 7.8144 -2.5817 17 1 8.8127 8.0538 -2.5908 18 1 6.9496 7.1331 -3.8400 19 1 6.6338 9.1123 -2.4748 20 6 6.2248 4.0918 -0.2478 21 6 5.5050 2.8532 -0.7814 22 1 -0.3633 0.5138 0.8900 23 1 -0.3633 0.5139 -0.8900 24 1 -0.3633 -1.0277 0.0005 25 1 5.2062 1.3698 1.5397 26 1 3.6057 2.0996 2.0943 27 1 2.4068 3.6774 0.6418 28 1 2.9175 4.0688 -1.0205 29 1 4.2456 4.9648 1.5789 30 1 3.4293 5.9955 0.3774 31 1 7.6017 5.8288 0.5007 32 1 7.0689 4.3288 -0.8954 33 1 6.5815 3.8960 0.7635 34 1 6.1385 1.9759 -0.6507 35 1 5.2818 2.9884 -1.8397 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000334891181.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 12:09:22 Heat of formation + Delta-G solvation = -37.981094 kcal Electronic energy + Delta-G solvation = -17630.022910 eV Core-core repulsion = 14822.747484 eV Total energy + Delta-G solvation = -2807.275426 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 239.131 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -40.72285 -38.58114 -36.37167 -35.23235 -31.82670 -30.21032 -28.66553 -27.75046 -24.34352 -24.07247 -22.42762 -21.29207 -20.16726 -18.37330 -17.57580 -17.16227 -16.40766 -16.12936 -14.74375 -14.18007 -14.14717 -13.67869 -13.46488 -13.41717 -12.87012 -12.74185 -12.61292 -12.12661 -11.91394 -11.58308 -11.09751 -10.86057 -10.79835 -10.63134 -10.35743 -10.14582 -10.00364 -9.76460 -9.55587 -9.49871 -9.17450 -8.29032 -6.80858 -6.02738 -3.16355 2.17148 2.67224 3.53172 3.56397 3.74405 3.92549 4.64349 4.76006 4.85005 4.93430 4.97934 5.04893 5.16893 5.33510 5.38523 5.50826 5.60305 5.80622 5.88918 6.04565 6.07262 6.26340 6.33864 6.42413 6.54911 6.57197 6.82216 6.87008 6.94739 7.12331 7.24094 7.84900 8.07298 8.62844 9.18343 9.90767 10.35624 11.25471 Molecular weight = 239.13amu Principal moments of inertia in cm(-1) A = 0.049275 B = 0.005758 C = 0.005560 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 568.101584 B = 4861.224216 C = 5034.955497 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.036 3.964 2 O -0.362 6.362 3 C 0.491 3.509 4 O -0.496 6.496 5 C -0.181 4.181 6 H 0.129 0.871 7 C -0.143 4.143 8 C -0.056 4.056 9 C -0.101 4.101 10 C 0.149 3.851 11 N -0.598 5.598 12 C -0.348 4.348 13 H 0.055 0.945 14 C -0.025 4.025 15 N -0.916 5.916 16 Si 1.062 2.938 17 H -0.286 1.286 18 H -0.294 1.294 19 H -0.293 1.293 20 C 0.153 3.847 21 C -0.103 4.103 22 H 0.061 0.939 23 H 0.062 0.938 24 H 0.098 0.902 25 H 0.107 0.893 26 H 0.097 0.903 27 H 0.079 0.921 28 H 0.062 0.938 29 H 0.015 0.985 30 H 0.055 0.945 31 H 0.268 0.732 32 H 0.084 0.916 33 H 0.018 0.982 34 H 0.055 0.945 35 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.904 -12.743 1.402 16.200 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.058 4.058 2 O -0.279 6.279 3 C 0.335 3.665 4 O -0.384 6.384 5 C -0.200 4.200 6 H 0.147 0.853 7 C -0.180 4.180 8 C -0.056 4.056 9 C -0.140 4.140 10 C 0.022 3.978 11 N -0.321 5.321 12 C -0.477 4.477 13 H 0.073 0.927 14 C -0.227 4.227 15 N -0.556 5.556 16 Si 0.892 3.108 17 H -0.211 1.211 18 H -0.221 1.221 19 H -0.220 1.220 20 C 0.027 3.973 21 C -0.142 4.142 22 H 0.080 0.920 23 H 0.080 0.920 24 H 0.116 0.884 25 H 0.125 0.875 26 H 0.115 0.885 27 H 0.098 0.902 28 H 0.081 0.919 29 H 0.033 0.967 30 H 0.074 0.926 31 H 0.079 0.921 32 H 0.103 0.897 33 H 0.036 0.964 34 H 0.073 0.927 35 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -8.865 -11.710 0.572 14.698 hybrid contribution -1.671 -0.867 0.789 2.042 sum -10.536 -12.578 1.361 16.464 Atomic orbital electron populations 1.23222 0.76755 1.03344 1.02504 1.86508 1.23048 1.33951 1.84347 1.22885 0.90686 0.80985 0.71926 1.90643 1.67005 1.35613 1.45106 1.21983 0.87527 1.03096 1.07385 0.85281 1.23104 1.01398 1.02593 0.90887 1.21698 0.97513 0.88619 0.97798 1.21961 0.96297 0.93382 1.02390 1.20949 0.88235 0.95258 0.93322 1.44072 1.18448 1.11998 1.57626 1.20006 0.93943 1.01234 1.32512 0.92704 1.25795 0.92627 1.01141 1.03117 1.70786 1.35369 1.38144 1.11345 0.83565 0.75895 0.75526 0.75821 1.21133 1.22129 1.22032 1.20826 0.93337 0.85143 0.98013 1.21763 0.93107 0.99904 0.99449 0.92034 0.91967 0.88360 0.87483 0.88490 0.90242 0.91941 0.96665 0.92599 0.92091 0.89736 0.96445 0.92679 0.91554 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.34 10.56 101.05 1.07 1.41 16 2 O -0.36 -4.71 10.57 -39.24 -0.41 -5.12 16 3 C 0.49 7.44 7.72 36.00 0.28 7.72 16 4 O -0.50 -8.66 12.80 -18.75 -0.24 -8.90 16 5 C -0.18 -2.63 6.03 -91.85 -0.55 -3.18 16 6 H 0.13 1.63 8.14 -51.93 -0.42 1.21 16 7 C -0.14 -2.06 9.65 -26.77 -0.26 -2.32 16 8 C -0.06 -0.97 1.94 -154.47 -0.30 -1.27 16 9 C -0.10 -1.98 4.46 -26.45 -0.12 -2.10 16 10 C 0.15 3.31 6.52 -3.67 -0.02 3.28 16 11 N -0.60 -15.28 2.81 -172.56 -0.48 -15.77 16 12 C -0.35 -9.88 9.45 -15.06 -0.14 -10.02 16 13 H 0.06 1.58 7.95 -52.49 -0.42 1.16 16 14 C -0.03 -0.72 4.65 -17.43 -0.08 -0.80 16 15 N -0.92 -27.45 12.34 55.49 0.68 -26.76 16 16 Si 1.06 25.45 29.99 -169.99 -5.10 20.35 16 17 H -0.29 -6.91 7.11 56.52 0.40 -6.51 16 18 H -0.29 -6.82 7.11 56.52 0.40 -6.42 16 19 H -0.29 -6.77 7.11 56.52 0.40 -6.37 16 20 C 0.15 3.57 4.70 -3.92 -0.02 3.55 16 21 C -0.10 -1.94 5.82 -26.70 -0.16 -2.09 16 22 H 0.06 0.58 8.13 -51.93 -0.42 0.16 16 23 H 0.06 0.60 8.13 -51.93 -0.42 0.18 16 24 H 0.10 0.63 8.14 -51.93 -0.42 0.21 16 25 H 0.11 1.37 8.14 -51.93 -0.42 0.95 16 26 H 0.10 1.37 8.14 -51.93 -0.42 0.95 16 27 H 0.08 1.50 5.70 -51.93 -0.30 1.21 16 28 H 0.06 1.32 8.14 -51.93 -0.42 0.89 16 29 H 0.02 0.34 8.14 -51.93 -0.42 -0.09 16 30 H 0.06 1.26 7.91 -51.93 -0.41 0.85 16 31 H 0.27 8.10 6.87 -40.82 -0.28 7.82 16 32 H 0.08 2.21 6.10 -51.93 -0.32 1.89 16 33 H 0.02 0.41 8.01 -51.93 -0.42 -0.01 16 34 H 0.05 0.88 8.10 -51.93 -0.42 0.46 16 35 H 0.07 1.31 8.14 -51.93 -0.42 0.89 16 LS Contribution 285.22 15.07 4.30 4.30 Total: -1.00 -31.60 285.22 -6.72 -38.32 By element: Atomic # 1 Polarization: 4.57 SS G_CDS: -5.16 Total: -0.59 kcal Atomic # 6 Polarization: -5.52 SS G_CDS: -0.31 Total: -5.83 kcal Atomic # 7 Polarization: -42.73 SS G_CDS: 0.20 Total: -42.53 kcal Atomic # 8 Polarization: -13.37 SS G_CDS: -0.65 Total: -14.02 kcal Atomic # 14 Polarization: 25.45 SS G_CDS: -5.10 Total: 20.35 kcal Total LS contribution 4.30 Total: 4.30 kcal Total: -31.60 -6.72 -38.32 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000334891181.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 0.336 kcal (2) G-P(sol) polarization free energy of solvation -31.598 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -31.263 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.719 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.317 kcal (6) G-S(sol) free energy of system = (1) + (5) -37.981 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds