Wall clock time and date at job start Thu Apr 9 2020 12:09:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45212 * 1 3 3 C 1.34224 * 117.00092 * 2 1 4 4 O 1.20829 * 120.00085 * 359.97438 * 3 2 1 5 5 C 1.50698 * 120.00183 * 180.02562 * 3 2 1 6 6 H 1.09003 * 115.56049 * 34.28869 * 5 3 2 7 7 C 1.53036 * 117.50138 * 248.58476 * 5 3 2 8 8 C 1.52814 * 117.50358 * 179.97438 * 5 3 2 9 9 C 1.53187 * 117.71480 * 359.86013 * 8 5 3 10 10 C 1.53356 * 108.76551 * 158.87631 * 9 8 5 11 11 N 1.46837 * 108.81506 * 51.30845 * 10 9 8 12 12 C 1.36928 * 120.38177 * 123.10701 * 11 10 9 13 13 H 1.08000 * 120.00320 * 332.90852 * 12 11 10 14 14 C 1.38813 * 120.00356 * 152.90323 * 12 11 10 15 15 N 1.31621 * 119.99983 * 333.81152 * 14 12 11 16 16 Si 1.86800 * 120.00071 * 153.80713 * 14 12 11 17 17 H 1.48498 * 109.47159 * 180.02562 * 16 14 12 18 18 H 1.48505 * 109.47066 * 299.99957 * 16 14 12 19 19 H 1.48493 * 109.47234 * 60.00189 * 16 14 12 20 20 C 1.46841 * 119.24108 * 303.37902 * 11 10 9 21 21 C 1.52871 * 109.07852 * 56.58169 * 20 11 10 22 22 H 1.09002 * 109.46653 * 299.99952 * 1 2 3 23 23 H 1.09000 * 109.46729 * 59.99852 * 1 2 3 24 24 H 1.08999 * 109.46966 * 180.02562 * 1 2 3 25 25 H 1.08998 * 117.50130 * 145.04346 * 7 5 3 26 26 H 1.08990 * 117.50530 * 359.97438 * 7 5 3 27 27 H 1.08993 * 109.58583 * 39.09568 * 9 8 5 28 28 H 1.09001 * 109.58679 * 278.66062 * 9 8 5 29 29 H 1.09006 * 109.57815 * 291.50971 * 10 9 8 30 30 H 1.08993 * 109.68979 * 171.17362 * 10 9 8 31 31 H 0.96999 * 119.99555 * 354.42209 * 15 14 12 32 32 H 1.08996 * 109.58705 * 176.42002 * 20 11 10 33 33 H 1.09000 * 109.58107 * 296.82570 * 20 11 10 34 34 H 1.08995 * 109.67088 * 189.04819 * 21 20 11 35 35 H 1.09001 * 109.56178 * 68.72657 * 21 20 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4521 0.0000 0.0000 3 6 2.0615 1.1959 0.0000 4 8 1.4035 2.2093 -0.0005 5 6 3.5664 1.2748 -0.0006 6 1 4.0784 0.4882 -0.5549 7 6 4.2467 1.8065 1.2630 8 6 4.2002 2.6653 -0.0012 9 6 3.2617 3.8760 -0.0044 10 6 4.0289 5.0964 0.5188 11 7 5.2867 5.2212 -0.2287 12 6 5.5788 6.3755 -0.9049 13 1 4.7803 7.0051 -1.2688 14 6 6.9013 6.7367 -1.1225 15 7 7.8412 6.3198 -0.3008 16 14 7.3472 7.8144 -2.5817 17 1 8.8127 8.0538 -2.5908 18 1 6.9496 7.1331 -3.8400 19 1 6.6338 9.1123 -2.4748 20 6 6.2248 4.0918 -0.2478 21 6 5.5050 2.8532 -0.7814 22 1 -0.3633 0.5138 0.8900 23 1 -0.3633 0.5139 -0.8900 24 1 -0.3633 -1.0277 0.0005 25 1 5.2062 1.3698 1.5397 26 1 3.6057 2.0996 2.0943 27 1 2.4068 3.6774 0.6418 28 1 2.9175 4.0688 -1.0205 29 1 4.2456 4.9648 1.5789 30 1 3.4293 5.9955 0.3774 31 1 7.6017 5.8288 0.5007 32 1 7.0689 4.3288 -0.8954 33 1 6.5815 3.8960 0.7635 34 1 6.1385 1.9759 -0.6507 35 1 5.2818 2.9884 -1.8397 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000334891181.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 12:09:21 Heat of formation + Delta-G solvation = -56.559770 kcal Electronic energy + Delta-G solvation = -17630.828542 eV Core-core repulsion = 14822.747484 eV Total energy + Delta-G solvation = -2808.081057 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 239.131 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -41.90958 -39.94553 -37.70101 -36.82340 -33.78081 -31.90124 -30.24902 -28.84802 -26.20476 -25.26501 -24.12073 -22.95549 -21.41200 -20.09400 -19.01206 -18.70160 -17.50403 -17.26078 -16.36129 -16.07726 -15.53372 -15.33669 -15.20742 -14.65260 -14.47377 -14.11266 -13.98055 -13.55130 -13.21271 -12.90601 -12.76485 -12.56163 -12.43056 -12.03597 -11.88827 -11.79766 -11.67980 -11.50488 -11.08594 -10.91156 -10.86102 -10.39345 -8.89364 -8.24012 -5.37333 1.00746 1.58796 1.64957 1.66536 1.85476 2.66332 2.69937 3.21415 3.45600 3.61245 3.74097 3.75911 4.00213 4.06359 4.29227 4.31229 4.39794 4.49069 4.60067 4.67883 4.69795 4.78145 4.88106 4.93282 4.94756 5.10966 5.17841 5.22054 5.27132 5.47814 5.50873 5.84861 6.40975 6.72925 7.08747 7.80629 8.23954 8.99995 Molecular weight = 239.13amu Principal moments of inertia in cm(-1) A = 0.049275 B = 0.005758 C = 0.005560 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 568.101584 B = 4861.224216 C = 5034.955497 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 O -0.360 6.360 3 C 0.491 3.509 4 O -0.527 6.527 5 C -0.160 4.160 6 H 0.157 0.843 7 C -0.124 4.124 8 C -0.090 4.090 9 C -0.083 4.083 10 C 0.146 3.854 11 N -0.617 5.617 12 C -0.360 4.360 13 H 0.043 0.957 14 C -0.071 4.071 15 N -0.937 5.937 16 Si 1.112 2.888 17 H -0.288 1.288 18 H -0.282 1.282 19 H -0.279 1.279 20 C 0.157 3.843 21 C -0.088 4.088 22 H 0.061 0.939 23 H 0.059 0.941 24 H 0.134 0.866 25 H 0.131 0.869 26 H 0.100 0.900 27 H 0.087 0.913 28 H 0.038 0.962 29 H 0.019 0.981 30 H 0.041 0.959 31 H 0.255 0.745 32 H 0.050 0.950 33 H 0.014 0.986 34 H 0.090 0.910 35 H 0.051 0.949 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.513 -14.796 1.299 18.197 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.276 6.276 3 C 0.336 3.664 4 O -0.417 6.417 5 C -0.179 4.179 6 H 0.175 0.825 7 C -0.161 4.161 8 C -0.090 4.090 9 C -0.122 4.122 10 C 0.021 3.979 11 N -0.341 5.341 12 C -0.490 4.490 13 H 0.061 0.939 14 C -0.268 4.268 15 N -0.579 5.579 16 Si 0.937 3.063 17 H -0.214 1.214 18 H -0.208 1.208 19 H -0.205 1.205 20 C 0.032 3.968 21 C -0.127 4.127 22 H 0.080 0.920 23 H 0.077 0.923 24 H 0.152 0.848 25 H 0.149 0.851 26 H 0.119 0.881 27 H 0.105 0.895 28 H 0.057 0.943 29 H 0.037 0.963 30 H 0.060 0.940 31 H 0.065 0.935 32 H 0.069 0.931 33 H 0.032 0.968 34 H 0.108 0.892 35 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -9.508 -13.805 0.480 16.769 hybrid contribution -1.592 -0.275 0.874 1.837 sum -11.100 -14.079 1.354 17.980 Atomic orbital electron populations 1.23557 0.74761 1.05743 1.02429 1.86488 1.24942 1.32488 1.83670 1.22995 0.90983 0.81170 0.71231 1.90633 1.67683 1.36750 1.46593 1.22009 0.87500 1.01104 1.07247 0.82527 1.23234 1.02525 1.00251 0.90082 1.21444 0.96971 0.89477 1.01120 1.21679 0.96501 0.93232 1.00774 1.21033 0.87256 0.96291 0.93320 1.44303 1.19601 1.12038 1.58201 1.20212 0.93889 1.02265 1.32647 0.93936 1.27115 0.92671 1.02205 1.04784 1.70900 1.35721 1.39623 1.11634 0.82891 0.75501 0.74728 0.73190 1.21372 1.20788 1.20458 1.20727 0.92468 0.86449 0.97199 1.21523 0.94032 0.98753 0.98426 0.91988 0.92254 0.84755 0.85093 0.88139 0.89485 0.94312 0.96302 0.94019 0.93530 0.93133 0.96834 0.89168 0.93043 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.46 10.56 113.37 1.20 1.66 16 2 O -0.36 -8.25 10.57 -51.36 -0.54 -8.80 16 3 C 0.49 13.65 7.72 71.24 0.55 14.20 16 4 O -0.53 -17.67 12.80 21.95 0.28 -17.39 16 5 C -0.16 -4.11 6.03 -11.59 -0.07 -4.18 16 6 H 0.16 3.21 8.14 -2.39 -0.02 3.19 16 7 C -0.12 -3.16 9.65 30.57 0.29 -2.87 16 8 C -0.09 -2.96 1.94 -52.15 -0.10 -3.06 16 9 C -0.08 -3.24 4.46 30.78 0.14 -3.10 16 10 C 0.15 6.65 6.52 86.43 0.56 7.21 16 11 N -0.62 -32.29 2.81 -699.86 -1.97 -34.25 16 12 C -0.36 -21.02 9.45 84.04 0.79 -20.22 16 13 H 0.04 2.53 7.95 -2.91 -0.02 2.50 16 14 C -0.07 -4.12 4.65 84.86 0.39 -3.73 16 15 N -0.94 -57.36 12.34 21.65 0.27 -57.09 16 16 Si 1.11 51.88 29.99 68.60 2.06 53.94 16 17 H -0.29 -13.46 7.11 99.48 0.71 -12.75 16 18 H -0.28 -12.46 7.11 99.48 0.71 -11.75 16 19 H -0.28 -12.24 7.11 99.48 0.71 -11.53 16 20 C 0.16 7.41 4.70 86.27 0.41 7.81 16 21 C -0.09 -3.22 5.82 30.61 0.18 -3.04 16 22 H 0.06 1.03 8.13 -2.39 -0.02 1.01 16 23 H 0.06 1.02 8.13 -2.39 -0.02 1.00 16 24 H 0.13 1.22 8.14 -2.39 -0.02 1.20 16 25 H 0.13 2.76 8.14 -2.39 -0.02 2.74 16 26 H 0.10 2.52 8.14 -2.39 -0.02 2.50 16 27 H 0.09 3.26 5.70 -2.39 -0.01 3.24 16 28 H 0.04 1.65 8.14 -2.39 -0.02 1.63 16 29 H 0.02 0.84 8.14 -2.38 -0.02 0.82 16 30 H 0.04 1.94 7.91 -2.39 -0.02 1.93 16 31 H 0.25 15.86 6.87 -92.71 -0.64 15.23 16 32 H 0.05 2.70 6.10 -2.39 -0.01 2.69 16 33 H 0.01 0.64 8.01 -2.39 -0.02 0.62 16 34 H 0.09 2.63 8.10 -2.39 -0.02 2.61 16 35 H 0.05 2.00 8.14 -2.39 -0.02 1.98 16 Total: -1.00 -69.68 285.22 5.64 -64.03 By element: Atomic # 1 Polarization: 7.67 SS G_CDS: 1.20 Total: 8.87 kcal Atomic # 6 Polarization: -13.65 SS G_CDS: 4.34 Total: -9.31 kcal Atomic # 7 Polarization: -89.65 SS G_CDS: -1.70 Total: -91.34 kcal Atomic # 8 Polarization: -25.93 SS G_CDS: -0.26 Total: -26.19 kcal Atomic # 14 Polarization: 51.88 SS G_CDS: 2.06 Total: 53.94 kcal Total: -69.68 5.64 -64.03 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000334891181.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 7.474 kcal (2) G-P(sol) polarization free energy of solvation -69.676 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -62.202 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.642 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.034 kcal (6) G-S(sol) free energy of system = (1) + (5) -56.560 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds