Wall clock time and date at job start Thu Apr 9 2020 12:09:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.52997 * 109.47313 * 2 1 4 4 C 1.53009 * 109.46879 * 306.09289 * 3 2 1 5 5 C 1.52999 * 109.47376 * 66.09012 * 3 2 1 6 6 C 1.53000 * 109.47230 * 186.09235 * 3 2 1 7 7 H 1.08994 * 109.87493 * 291.75910 * 6 3 2 8 8 C 1.54328 * 109.88181 * 52.77500 * 6 3 2 9 9 C 1.55147 * 102.94324 * 141.61202 * 8 6 3 10 10 C 1.54909 * 101.58465 * 324.49200 * 9 8 6 11 11 N 1.47022 * 109.88142 * 170.57519 * 6 3 2 12 12 C 1.34776 * 125.64237 * 61.60116 * 11 6 3 13 13 O 1.21681 * 120.00577 * 359.20348 * 12 11 6 14 14 C 1.46378 * 119.99676 * 179.20212 * 12 11 6 15 15 H 1.07999 * 120.00255 * 0.02562 * 14 12 11 16 16 C 1.40046 * 120.00108 * 179.97438 * 14 12 11 17 17 N 1.30671 * 119.99899 * 0.02562 * 16 14 12 18 18 Si 1.86802 * 120.00117 * 180.02562 * 16 14 12 19 19 H 1.48494 * 109.47223 * 60.00453 * 18 16 14 20 20 H 1.48505 * 109.47114 * 180.02562 * 18 16 14 21 21 H 1.48499 * 109.47044 * 299.99862 * 18 16 14 22 22 H 1.09000 * 109.46940 * 179.97438 * 1 2 3 23 23 H 1.08992 * 109.46968 * 300.00128 * 1 2 3 24 24 H 1.08999 * 109.47043 * 60.00190 * 1 2 3 25 25 H 1.08999 * 109.47043 * 119.99810 * 2 1 3 26 26 H 1.09000 * 109.47047 * 239.99219 * 2 1 3 27 27 H 1.08996 * 109.47292 * 59.99938 * 4 3 2 28 28 H 1.08998 * 109.47214 * 180.02562 * 4 3 2 29 29 H 1.09004 * 109.46713 * 300.00217 * 4 3 2 30 30 H 1.09001 * 109.46855 * 85.07076 * 5 3 2 31 31 H 1.08999 * 109.47333 * 205.07445 * 5 3 2 32 32 H 1.09004 * 109.47155 * 325.07431 * 5 3 2 33 33 H 1.09008 * 110.71599 * 259.97440 * 8 6 3 34 34 H 1.09002 * 110.72459 * 23.06589 * 8 6 3 35 35 H 1.09002 * 111.00973 * 82.57450 * 9 8 6 36 36 H 1.09008 * 111.00334 * 206.38428 * 9 8 6 37 37 H 1.08994 * 110.36704 * 155.84927 * 10 9 8 38 38 H 1.09005 * 110.36966 * 278.17958 * 10 9 8 39 39 H 0.97001 * 120.00129 * 179.97438 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 1.4089 2.2066 -1.1657 5 6 1.6589 2.1182 1.3187 6 6 3.5624 1.4451 -0.1531 7 1 4.0256 1.0324 0.7430 8 6 3.9674 0.6096 -1.3858 9 6 5.1446 1.4230 -1.9854 10 6 4.6954 2.8776 -1.6990 11 7 4.0396 2.8171 -0.3800 12 6 3.9000 3.8489 0.4758 13 8 3.3249 3.6866 1.5359 14 6 4.4401 5.1647 0.1302 15 1 4.9502 5.3089 -0.8108 16 6 4.2945 6.2370 1.0191 17 7 3.6770 6.0627 2.1575 18 14 4.9832 7.9164 0.5777 19 1 4.3463 8.3991 -0.6739 20 1 4.7002 8.8724 1.6783 21 1 6.4511 7.8126 0.3781 22 1 -0.3633 -1.0277 -0.0005 23 1 -0.3633 0.5138 0.8899 24 1 -0.3633 0.5138 -0.8900 25 1 1.8933 -0.5138 0.8900 26 1 1.8934 -0.5140 -0.8899 27 1 0.3244 2.2046 -1.0567 28 1 1.7725 3.2341 -1.1660 29 1 1.6804 1.7251 -2.1052 30 1 2.4119 1.8921 2.0737 31 1 1.6041 3.1969 1.1717 32 1 0.6891 1.7470 1.6502 33 1 4.2989 -0.3846 -1.0857 34 1 3.1416 0.5417 -2.0940 35 1 6.0789 1.1943 -1.4726 36 1 5.2361 1.2456 -3.0571 37 1 5.5592 3.5412 -1.6631 38 1 3.9893 3.2132 -2.4586 39 1 3.5765 6.8053 2.7734 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000335758369.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 12:09:07 Heat of formation + Delta-G solvation = -38.392681 kcal Electronic energy + Delta-G solvation = -18764.643161 eV Core-core repulsion = 16093.182983 eV Total energy + Delta-G solvation = -2671.460179 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 239.163 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -39.52045 -36.10919 -35.23119 -32.48322 -30.30845 -29.87591 -27.54603 -26.58382 -25.97359 -23.59025 -22.20180 -20.67586 -19.28788 -17.38166 -16.49568 -15.71945 -15.60148 -14.48984 -14.18741 -13.95184 -13.65100 -13.12065 -12.80912 -12.49031 -12.41546 -11.91215 -11.84024 -11.44910 -11.37831 -11.08697 -11.03078 -10.98916 -10.68812 -10.51794 -10.43549 -10.38418 -10.25942 -10.10366 -9.70567 -9.57536 -9.45864 -8.76446 -7.35435 -6.94301 -6.12984 -4.58109 3.16643 3.21879 3.23288 4.11426 4.59694 4.65037 5.14937 5.21050 5.33643 5.42984 5.46904 5.52601 5.81721 5.86377 5.93478 5.97502 5.99456 6.12188 6.16693 6.21655 6.24254 6.35727 6.42948 6.49599 6.51185 6.58183 6.71334 6.77484 6.90879 6.95582 7.11186 7.30416 7.47072 7.51726 7.82074 8.20375 8.50398 9.06834 9.59814 10.63376 10.84411 Molecular weight = 239.16amu Principal moments of inertia in cm(-1) A = 0.029469 B = 0.008495 C = 0.007197 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 949.912279 B = 3295.286024 C = 3889.794708 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.112 4.112 3 C -0.068 4.068 4 C -0.132 4.132 5 C -0.124 4.124 6 C 0.155 3.845 7 H 0.053 0.947 8 C -0.130 4.130 9 C -0.136 4.136 10 C 0.119 3.881 11 N -0.635 5.635 12 C 0.568 3.432 13 O -0.557 6.557 14 C -0.541 4.541 15 H 0.065 0.935 16 C 0.089 3.911 17 N -0.769 5.769 18 Si 0.904 3.096 19 H -0.269 1.269 20 H -0.281 1.281 21 H -0.269 1.269 22 H 0.043 0.957 23 H 0.057 0.943 24 H 0.054 0.946 25 H 0.055 0.945 26 H 0.056 0.944 27 H 0.044 0.956 28 H 0.062 0.938 29 H 0.040 0.960 30 H 0.057 0.943 31 H 0.088 0.912 32 H 0.015 0.985 33 H 0.064 0.936 34 H 0.072 0.928 35 H 0.067 0.933 36 H 0.067 0.933 37 H 0.066 0.934 38 H 0.044 0.956 39 H 0.267 0.733 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.248 -8.520 -7.394 11.350 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.150 4.150 3 C -0.069 4.069 4 C -0.189 4.189 5 C -0.180 4.180 6 C 0.050 3.950 7 H 0.071 0.929 8 C -0.168 4.168 9 C -0.174 4.174 10 C -0.006 4.006 11 N -0.374 5.374 12 C 0.374 3.626 13 O -0.440 6.440 14 C -0.578 4.578 15 H 0.084 0.916 16 C -0.130 4.130 17 N -0.398 5.398 18 Si 0.729 3.271 19 H -0.194 1.194 20 H -0.206 1.206 21 H -0.194 1.194 22 H 0.062 0.938 23 H 0.076 0.924 24 H 0.073 0.927 25 H 0.074 0.926 26 H 0.075 0.925 27 H 0.063 0.937 28 H 0.081 0.919 29 H 0.059 0.941 30 H 0.076 0.924 31 H 0.107 0.893 32 H 0.034 0.966 33 H 0.083 0.917 34 H 0.091 0.909 35 H 0.085 0.915 36 H 0.086 0.914 37 H 0.085 0.915 38 H 0.062 0.938 39 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -1.637 -8.434 -6.545 10.800 hybrid contribution 0.433 0.807 -0.338 0.976 sum -1.204 -7.627 -6.883 10.344 Atomic orbital electron populations 1.21889 0.96546 1.00385 1.02178 1.21600 0.95478 0.96922 1.01018 1.20881 0.94990 0.93860 0.97182 1.21861 0.99169 1.01178 0.96658 1.22310 0.97707 1.02960 0.95022 1.21283 0.92739 0.84926 0.96018 0.92918 1.22742 0.98076 0.98080 0.97858 1.22793 0.98217 0.96407 1.00016 1.21861 0.96653 0.95118 0.86935 1.48684 1.61923 1.08352 1.18439 1.17859 0.79613 0.82477 0.82614 1.90636 1.45368 1.83303 1.24650 1.20888 1.38895 0.93012 1.04980 0.91649 1.25666 0.93467 0.99780 0.94122 1.69994 1.31446 1.31540 1.06786 0.86500 0.79966 0.81999 0.78676 1.19382 1.20629 1.19392 0.93799 0.92390 0.92655 0.92631 0.92506 0.93656 0.91878 0.94052 0.92402 0.89342 0.96595 0.91680 0.90930 0.91474 0.91399 0.91544 0.93768 0.92179 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.08 9.21 37.16 0.34 -1.74 16 2 C -0.11 -1.67 4.75 -26.73 -0.13 -1.80 16 3 C -0.07 -1.25 0.35 -154.51 -0.05 -1.30 16 4 C -0.13 -2.36 7.39 37.16 0.27 -2.08 16 5 C -0.12 -2.71 6.90 37.16 0.26 -2.45 16 6 C 0.16 2.99 2.36 -66.95 -0.16 2.83 16 7 H 0.05 1.11 7.94 -51.93 -0.41 0.70 16 8 C -0.13 -1.93 5.03 -24.90 -0.13 -2.05 16 9 C -0.14 -1.99 7.08 -24.59 -0.17 -2.17 16 10 C 0.12 2.20 6.54 -2.53 -0.02 2.18 16 11 N -0.63 -14.20 2.04 -164.66 -0.34 -14.53 16 12 C 0.57 15.65 6.96 -12.99 -0.09 15.56 16 13 O -0.56 -16.80 9.92 5.21 0.05 -16.75 16 14 C -0.54 -15.08 8.99 -35.63 -0.32 -15.40 16 15 H 0.07 1.70 6.62 -52.49 -0.35 1.35 16 16 C 0.09 2.46 5.50 -17.37 -0.10 2.36 16 17 N -0.77 -22.61 11.83 55.55 0.66 -21.96 16 18 Si 0.90 20.17 29.56 -169.99 -5.02 15.14 16 19 H -0.27 -5.87 7.11 56.52 0.40 -5.46 16 20 H -0.28 -6.15 7.11 56.52 0.40 -5.75 16 21 H -0.27 -5.87 7.11 56.52 0.40 -5.47 16 22 H 0.04 0.51 8.14 -51.93 -0.42 0.09 16 23 H 0.06 0.84 6.27 -51.93 -0.33 0.51 16 24 H 0.05 0.73 6.33 -51.93 -0.33 0.41 16 25 H 0.05 0.83 8.14 -51.93 -0.42 0.41 16 26 H 0.06 0.76 6.39 -51.93 -0.33 0.43 16 27 H 0.04 0.76 6.33 -51.93 -0.33 0.43 16 28 H 0.06 1.34 7.06 -51.93 -0.37 0.98 16 29 H 0.04 0.65 6.50 -51.93 -0.34 0.32 16 30 H 0.06 1.40 6.73 -51.93 -0.35 1.05 16 31 H 0.09 2.32 5.60 -51.93 -0.29 2.03 16 32 H 0.02 0.30 5.95 -51.93 -0.31 0.00 16 33 H 0.06 0.85 8.14 -51.92 -0.42 0.43 16 34 H 0.07 1.02 5.55 -51.93 -0.29 0.73 16 35 H 0.07 0.98 8.14 -51.93 -0.42 0.55 16 36 H 0.07 0.82 8.14 -51.92 -0.42 0.40 16 37 H 0.07 1.27 7.11 -51.93 -0.37 0.90 16 38 H 0.04 0.79 8.14 -51.93 -0.42 0.37 16 39 H 0.27 7.23 8.29 -40.82 -0.34 6.89 16 LS Contribution 287.28 15.07 4.33 4.33 Total: -1.00 -30.88 287.28 -6.67 -37.55 By element: Atomic # 1 Polarization: 8.34 SS G_CDS: -6.06 Total: 2.28 kcal Atomic # 6 Polarization: -5.78 SS G_CDS: -0.29 Total: -6.06 kcal Atomic # 7 Polarization: -36.81 SS G_CDS: 0.32 Total: -36.49 kcal Atomic # 8 Polarization: -16.80 SS G_CDS: 0.05 Total: -16.75 kcal Atomic # 14 Polarization: 20.17 SS G_CDS: -5.02 Total: 15.14 kcal Total LS contribution 4.33 Total: 4.33 kcal Total: -30.88 -6.67 -37.55 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000335758369.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -0.845 kcal (2) G-P(sol) polarization free energy of solvation -30.879 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -31.724 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.668 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.547 kcal (6) G-S(sol) free energy of system = (1) + (5) -38.393 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds