Wall clock time and date at job start Thu Apr 9 2020 12:09:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.52997 * 109.47313 * 2 1 4 4 C 1.53009 * 109.46879 * 306.09289 * 3 2 1 5 5 C 1.52999 * 109.47376 * 66.09012 * 3 2 1 6 6 C 1.53000 * 109.47230 * 186.09235 * 3 2 1 7 7 H 1.08994 * 109.87493 * 291.75910 * 6 3 2 8 8 C 1.54328 * 109.88181 * 52.77500 * 6 3 2 9 9 C 1.55147 * 102.94324 * 141.61202 * 8 6 3 10 10 C 1.54909 * 101.58465 * 324.49200 * 9 8 6 11 11 N 1.47022 * 109.88142 * 170.57519 * 6 3 2 12 12 C 1.34776 * 125.64237 * 61.60116 * 11 6 3 13 13 O 1.21681 * 120.00577 * 359.20348 * 12 11 6 14 14 C 1.46378 * 119.99676 * 179.20212 * 12 11 6 15 15 H 1.07999 * 120.00255 * 0.02562 * 14 12 11 16 16 C 1.40046 * 120.00108 * 179.97438 * 14 12 11 17 17 N 1.30671 * 119.99899 * 0.02562 * 16 14 12 18 18 Si 1.86802 * 120.00117 * 180.02562 * 16 14 12 19 19 H 1.48494 * 109.47223 * 60.00453 * 18 16 14 20 20 H 1.48505 * 109.47114 * 180.02562 * 18 16 14 21 21 H 1.48499 * 109.47044 * 299.99862 * 18 16 14 22 22 H 1.09000 * 109.46940 * 179.97438 * 1 2 3 23 23 H 1.08992 * 109.46968 * 300.00128 * 1 2 3 24 24 H 1.08999 * 109.47043 * 60.00190 * 1 2 3 25 25 H 1.08999 * 109.47043 * 119.99810 * 2 1 3 26 26 H 1.09000 * 109.47047 * 239.99219 * 2 1 3 27 27 H 1.08996 * 109.47292 * 59.99938 * 4 3 2 28 28 H 1.08998 * 109.47214 * 180.02562 * 4 3 2 29 29 H 1.09004 * 109.46713 * 300.00217 * 4 3 2 30 30 H 1.09001 * 109.46855 * 85.07076 * 5 3 2 31 31 H 1.08999 * 109.47333 * 205.07445 * 5 3 2 32 32 H 1.09004 * 109.47155 * 325.07431 * 5 3 2 33 33 H 1.09008 * 110.71599 * 259.97440 * 8 6 3 34 34 H 1.09002 * 110.72459 * 23.06589 * 8 6 3 35 35 H 1.09002 * 111.00973 * 82.57450 * 9 8 6 36 36 H 1.09008 * 111.00334 * 206.38428 * 9 8 6 37 37 H 1.08994 * 110.36704 * 155.84927 * 10 9 8 38 38 H 1.09005 * 110.36966 * 278.17958 * 10 9 8 39 39 H 0.97001 * 120.00129 * 179.97438 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 1.4089 2.2066 -1.1657 5 6 1.6589 2.1182 1.3187 6 6 3.5624 1.4451 -0.1531 7 1 4.0256 1.0324 0.7430 8 6 3.9674 0.6096 -1.3858 9 6 5.1446 1.4230 -1.9854 10 6 4.6954 2.8776 -1.6990 11 7 4.0396 2.8171 -0.3800 12 6 3.9000 3.8489 0.4758 13 8 3.3249 3.6866 1.5359 14 6 4.4401 5.1647 0.1302 15 1 4.9502 5.3089 -0.8108 16 6 4.2945 6.2370 1.0191 17 7 3.6770 6.0627 2.1575 18 14 4.9832 7.9164 0.5777 19 1 4.3463 8.3991 -0.6739 20 1 4.7002 8.8724 1.6783 21 1 6.4511 7.8126 0.3781 22 1 -0.3633 -1.0277 -0.0005 23 1 -0.3633 0.5138 0.8899 24 1 -0.3633 0.5138 -0.8900 25 1 1.8933 -0.5138 0.8900 26 1 1.8934 -0.5140 -0.8899 27 1 0.3244 2.2046 -1.0567 28 1 1.7725 3.2341 -1.1660 29 1 1.6804 1.7251 -2.1052 30 1 2.4119 1.8921 2.0737 31 1 1.6041 3.1969 1.1717 32 1 0.6891 1.7470 1.6502 33 1 4.2989 -0.3846 -1.0857 34 1 3.1416 0.5417 -2.0940 35 1 6.0789 1.1943 -1.4726 36 1 5.2361 1.2456 -3.0571 37 1 5.5592 3.5412 -1.6631 38 1 3.9893 3.2132 -2.4586 39 1 3.5765 6.8053 2.7734 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000335758369.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 12:09:06 Heat of formation + Delta-G solvation = -57.232436 kcal Electronic energy + Delta-G solvation = -18765.460114 eV Core-core repulsion = 16093.182983 eV Total energy + Delta-G solvation = -2672.277132 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 239.163 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -41.10813 -37.97953 -36.77549 -34.59723 -31.94174 -31.19380 -29.04017 -28.36341 -27.87711 -24.94355 -23.85215 -22.01104 -21.03522 -18.98584 -18.27624 -17.65178 -17.19584 -16.30374 -15.54284 -15.48034 -15.22236 -14.65381 -14.42962 -14.11315 -13.92666 -13.48501 -13.29306 -13.04869 -12.93634 -12.80644 -12.68230 -12.43817 -12.32377 -12.14173 -12.01665 -11.93316 -11.74900 -11.61617 -11.20538 -11.10950 -10.93038 -10.80736 -9.46193 -8.78580 -8.20982 -6.76208 1.36957 1.40248 1.50768 2.23970 2.53351 2.99845 3.67028 3.82037 3.85905 4.02462 4.14764 4.20333 4.31579 4.47884 4.57694 4.67066 4.68454 4.82330 4.89576 4.90958 5.02627 5.04448 5.10684 5.14287 5.19440 5.22571 5.31395 5.33290 5.35344 5.43661 5.44150 5.59455 5.68996 5.78721 5.97316 6.14608 6.58639 6.93205 7.64327 8.57428 8.78121 Molecular weight = 239.16amu Principal moments of inertia in cm(-1) A = 0.029469 B = 0.008495 C = 0.007197 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 949.912279 B = 3295.286024 C = 3889.794708 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.105 4.105 3 C -0.066 4.066 4 C -0.121 4.121 5 C -0.107 4.107 6 C 0.144 3.856 7 H 0.024 0.976 8 C -0.116 4.116 9 C -0.122 4.122 10 C 0.109 3.891 11 N -0.641 5.641 12 C 0.552 3.448 13 O -0.597 6.597 14 C -0.571 4.571 15 H 0.077 0.923 16 C 0.033 3.967 17 N -0.821 5.821 18 Si 0.988 3.012 19 H -0.257 1.257 20 H -0.275 1.275 21 H -0.257 1.257 22 H 0.070 0.930 23 H 0.040 0.960 24 H 0.061 0.939 25 H 0.052 0.948 26 H 0.086 0.914 27 H 0.055 0.945 28 H 0.019 0.981 29 H 0.072 0.928 30 H 0.021 0.979 31 H 0.038 0.962 32 H 0.033 0.967 33 H 0.092 0.908 34 H 0.093 0.907 35 H 0.067 0.933 36 H 0.108 0.892 37 H 0.053 0.947 38 H 0.052 0.948 39 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.928 -10.041 -10.274 14.396 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.143 4.143 3 C -0.067 4.067 4 C -0.178 4.178 5 C -0.164 4.164 6 C 0.040 3.960 7 H 0.042 0.958 8 C -0.154 4.154 9 C -0.160 4.160 10 C -0.015 4.015 11 N -0.378 5.378 12 C 0.357 3.643 13 O -0.483 6.483 14 C -0.608 4.608 15 H 0.095 0.905 16 C -0.182 4.182 17 N -0.451 5.451 18 Si 0.808 3.192 19 H -0.181 1.181 20 H -0.200 1.200 21 H -0.181 1.181 22 H 0.089 0.911 23 H 0.059 0.941 24 H 0.080 0.920 25 H 0.071 0.929 26 H 0.105 0.895 27 H 0.074 0.926 28 H 0.038 0.962 29 H 0.090 0.910 30 H 0.040 0.960 31 H 0.056 0.944 32 H 0.051 0.949 33 H 0.111 0.889 34 H 0.111 0.889 35 H 0.086 0.914 36 H 0.126 0.874 37 H 0.072 0.928 38 H 0.070 0.930 39 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -1.303 -9.995 -9.472 13.831 hybrid contribution 0.314 1.226 0.580 1.393 sum -0.988 -8.768 -8.891 12.527 Atomic orbital electron populations 1.21870 0.95361 1.01973 1.01610 1.21554 0.96442 0.93908 1.02352 1.20858 0.94729 0.96163 0.94947 1.21750 0.99619 0.98744 0.97735 1.22008 0.97531 1.00108 0.96730 1.21533 0.93136 0.83849 0.97504 0.95801 1.22732 0.98750 0.98292 0.95583 1.22764 0.97909 0.92778 1.02512 1.22110 0.96132 0.98173 0.85036 1.48490 1.61533 1.08684 1.19102 1.18099 0.79361 0.83905 0.82921 1.90621 1.46706 1.84378 1.26555 1.21377 1.39548 0.94061 1.05779 0.90517 1.26818 0.93273 1.04506 0.93599 1.70172 1.33320 1.33211 1.08370 0.85222 0.79509 0.75771 0.78727 1.18121 1.19965 1.18110 0.91140 0.94135 0.92049 0.92897 0.89527 0.92621 0.96184 0.90962 0.95961 0.94364 0.94851 0.88905 0.88900 0.91449 0.87381 0.92823 0.93007 0.91928 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.67 9.21 71.98 0.66 -3.01 16 2 C -0.10 -2.84 4.75 30.59 0.15 -2.69 16 3 C -0.07 -2.39 0.35 -52.18 -0.02 -2.41 16 4 C -0.12 -4.23 7.39 71.99 0.53 -3.70 16 5 C -0.11 -4.97 6.90 71.98 0.50 -4.47 16 6 C 0.14 5.50 2.36 45.34 0.11 5.60 16 7 H 0.02 1.04 7.94 -2.39 -0.02 1.02 16 8 C -0.12 -2.99 5.03 31.78 0.16 -2.83 16 9 C -0.12 -3.12 7.08 31.98 0.23 -2.89 16 10 C 0.11 3.92 6.54 86.85 0.57 4.49 16 11 N -0.64 -29.37 2.04 -793.09 -1.62 -30.99 16 12 C 0.55 32.12 6.96 86.36 0.60 32.72 16 13 O -0.60 -38.77 9.92 -4.29 -0.04 -38.81 16 14 C -0.57 -33.11 8.99 24.83 0.22 -32.88 16 15 H 0.08 4.09 6.62 -2.91 -0.02 4.08 16 16 C 0.03 1.86 5.50 85.30 0.47 2.33 16 17 N -0.82 -50.89 11.83 21.83 0.26 -50.63 16 18 Si 0.99 42.27 29.56 68.60 2.03 44.30 16 19 H -0.26 -10.42 7.11 99.48 0.71 -9.71 16 20 H -0.27 -11.36 7.11 99.48 0.71 -10.65 16 21 H -0.26 -10.41 7.11 99.48 0.71 -9.70 16 22 H 0.07 1.36 8.14 -2.39 -0.02 1.34 16 23 H 0.04 1.11 6.27 -2.39 -0.02 1.10 16 24 H 0.06 1.42 6.33 -2.39 -0.02 1.41 16 25 H 0.05 1.47 8.14 -2.39 -0.02 1.45 16 26 H 0.09 1.88 6.39 -2.39 -0.02 1.86 16 27 H 0.05 1.79 6.33 -2.39 -0.02 1.78 16 28 H 0.02 0.84 7.06 -2.39 -0.02 0.83 16 29 H 0.07 2.04 6.50 -2.38 -0.02 2.03 16 30 H 0.02 1.14 6.73 -2.39 -0.02 1.12 16 31 H 0.04 2.16 5.60 -2.39 -0.01 2.15 16 32 H 0.03 1.37 5.95 -2.38 -0.01 1.35 16 33 H 0.09 1.96 8.14 -2.38 -0.02 1.95 16 34 H 0.09 2.06 5.55 -2.39 -0.01 2.05 16 35 H 0.07 1.75 8.14 -2.39 -0.02 1.73 16 36 H 0.11 2.00 8.14 -2.38 -0.02 1.98 16 37 H 0.05 2.04 7.11 -2.39 -0.02 2.02 16 38 H 0.05 1.78 8.14 -2.38 -0.02 1.76 16 39 H 0.27 15.39 8.29 -92.71 -0.77 14.62 16 Total: -1.00 -74.15 287.28 5.83 -68.32 By element: Atomic # 1 Polarization: 16.51 SS G_CDS: 1.03 Total: 17.54 kcal Atomic # 6 Polarization: -13.91 SS G_CDS: 4.17 Total: -9.74 kcal Atomic # 7 Polarization: -80.25 SS G_CDS: -1.36 Total: -81.61 kcal Atomic # 8 Polarization: -38.77 SS G_CDS: -0.04 Total: -38.81 kcal Atomic # 14 Polarization: 42.27 SS G_CDS: 2.03 Total: 44.30 kcal Total: -74.15 5.83 -68.32 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000335758369.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 11.091 kcal (2) G-P(sol) polarization free energy of solvation -74.149 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -63.059 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.826 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.323 kcal (6) G-S(sol) free energy of system = (1) + (5) -57.232 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds