Wall clock time and date at job start Thu Apr 9 2020 12:09:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46502 * 1 3 3 C 1.37100 * 119.99903 * 2 1 4 4 H 1.07994 * 120.00148 * 182.26813 * 3 2 1 5 5 C 1.38952 * 119.99819 * 2.26425 * 3 2 1 6 6 N 1.31416 * 120.00118 * 7.62640 * 5 3 2 7 7 Si 1.86798 * 120.00062 * 187.62062 * 5 3 2 8 8 H 1.48504 * 109.47226 * 0.02562 * 7 5 3 9 9 H 1.48499 * 109.47000 * 120.00006 * 7 5 3 10 10 H 1.48501 * 109.47503 * 240.00375 * 7 5 3 11 11 C 1.34777 * 120.00507 * 179.97438 * 2 1 3 12 12 O 1.21296 * 119.99512 * 354.64232 * 11 2 1 13 13 C 1.50696 * 120.00337 * 174.64484 * 11 2 1 14 14 C 1.53003 * 109.47185 * 62.75290 * 13 11 2 15 15 C 1.53002 * 109.47047 * 302.75430 * 13 11 2 16 16 C 1.52993 * 109.47196 * 182.75338 * 13 11 2 17 17 C 1.54271 * 110.48965 * 179.97438 * 16 13 11 18 18 C 1.53872 * 106.64351 * 217.73693 * 17 16 13 19 19 C 1.54267 * 106.59941 * 359.97438 * 18 17 16 20 20 C 1.54892 * 104.19551 * 23.60853 * 19 18 17 21 21 H 1.08998 * 109.46406 * 174.46362 * 1 2 3 22 22 H 1.08997 * 109.47138 * 294.46567 * 1 2 3 23 23 H 1.08997 * 109.46926 * 54.46623 * 1 2 3 24 24 H 0.96996 * 120.00075 * 180.02562 * 6 5 3 25 25 H 1.09004 * 109.47012 * 189.59335 * 14 13 11 26 26 H 1.09002 * 109.46962 * 309.59466 * 14 13 11 27 27 H 1.09000 * 109.46943 * 69.59596 * 14 13 11 28 28 H 1.09004 * 109.46734 * 305.95270 * 15 13 11 29 29 H 1.08997 * 109.47271 * 65.94979 * 15 13 11 30 30 H 1.08998 * 109.46922 * 185.95237 * 15 13 11 31 31 H 1.09000 * 110.54342 * 302.61623 * 16 13 11 32 32 H 1.08999 * 110.02517 * 98.42664 * 17 16 13 33 33 H 1.08998 * 110.02779 * 337.05089 * 17 16 13 34 34 H 1.09000 * 110.02967 * 119.25839 * 18 17 16 35 35 H 1.08993 * 110.03121 * 240.64105 * 18 17 16 36 36 H 1.08997 * 110.48456 * 142.28823 * 19 18 17 37 37 H 1.09005 * 110.48184 * 264.93099 * 19 18 17 38 38 H 1.08995 * 110.75556 * 80.37127 * 20 19 18 39 39 H 1.09004 * 110.75216 * 203.56483 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1505 1.1873 0.0000 4 1 3.2298 1.1877 -0.0370 5 6 1.4565 2.3902 0.0475 6 7 0.1570 2.3918 0.2432 7 14 2.3707 4.0050 -0.1665 8 1 3.8160 3.7323 -0.3718 9 1 1.8311 4.7266 -1.3470 10 1 2.1918 4.8400 1.0484 11 6 2.1390 -1.1671 0.0005 12 8 1.5365 -2.2153 0.0991 13 6 3.6410 -1.1700 -0.1213 14 6 4.2518 -0.4508 1.0832 15 6 4.0498 -0.4485 -1.4071 16 6 4.1465 -2.6134 -0.1636 17 6 5.6838 -2.6437 -0.2889 18 6 6.0268 -3.8173 -1.2231 19 6 4.6859 -4.4606 -1.6331 20 6 3.6476 -3.3267 -1.4457 21 1 -0.3632 -1.0229 -0.0991 22 1 -0.3633 0.4256 0.9354 23 1 -0.3633 0.5972 -0.8363 24 1 -0.3275 3.2314 0.2760 25 1 5.3184 -0.3021 0.9151 26 1 3.7661 0.5163 1.2136 27 1 4.1059 -1.0544 1.9791 28 1 3.5309 -0.8955 -2.2551 29 1 3.7832 0.6057 -1.3327 30 1 5.1264 -0.5419 -1.5495 31 1 3.8250 -3.1574 0.7245 32 1 6.1351 -2.8019 0.6906 33 1 6.0419 -1.7079 -0.7180 34 1 6.5506 -3.4510 -2.1060 35 1 6.6453 -4.5446 -0.6973 36 1 4.7187 -4.7797 -2.6748 37 1 4.4523 -5.3032 -0.9822 38 1 3.6620 -2.6453 -2.2963 39 1 2.6489 -3.7379 -1.2987 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000336630160.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 12:09:26 Heat of formation + Delta-G solvation = -29.088963 kcal Electronic energy + Delta-G solvation = -18693.065662 eV Core-core repulsion = 16022.008923 eV Total energy + Delta-G solvation = -2671.056739 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 239.163 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -39.72244 -37.30152 -34.76204 -33.64308 -31.29235 -28.39387 -27.57127 -26.54621 -25.93186 -24.73251 -22.00493 -20.10822 -19.30284 -18.12813 -17.27149 -15.67606 -15.23653 -14.66682 -14.17455 -14.03893 -13.84600 -13.33004 -13.19040 -12.78938 -12.49938 -11.78845 -11.71241 -11.32013 -11.28926 -11.19456 -10.98558 -10.81102 -10.77406 -10.71942 -10.46819 -10.38373 -10.26187 -10.08464 -9.94600 -9.68939 -9.21417 -9.03877 -8.08367 -7.82229 -6.26135 -3.82897 3.08352 3.18437 3.20702 3.99822 4.06383 4.78407 5.03415 5.06186 5.13193 5.22633 5.62396 5.73394 5.78705 5.87741 5.97343 6.05988 6.08775 6.13500 6.18944 6.25718 6.29581 6.38871 6.47476 6.62271 6.65085 6.69156 6.70964 6.81590 6.94159 7.00577 7.12075 7.15790 7.31375 7.48195 7.55624 7.80618 8.44044 9.10801 9.63192 10.02364 10.67894 Molecular weight = 239.16amu Principal moments of inertia in cm(-1) A = 0.033724 B = 0.008096 C = 0.007084 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 830.057761 B = 3457.734883 C = 3951.773032 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.124 3.876 2 N -0.447 5.447 3 C -0.336 4.336 4 H 0.124 0.876 5 C 0.029 3.971 6 N -0.875 5.875 7 Si 0.918 3.082 8 H -0.267 1.267 9 H -0.280 1.280 10 H -0.281 1.281 11 C 0.462 3.538 12 O -0.612 6.612 13 C -0.053 4.053 14 C -0.157 4.157 15 C -0.154 4.154 16 C -0.059 4.059 17 C -0.125 4.125 18 C -0.122 4.122 19 C -0.126 4.126 20 C -0.117 4.117 21 H 0.032 0.968 22 H 0.063 0.937 23 H 0.060 0.940 24 H 0.265 0.735 25 H 0.048 0.952 26 H 0.093 0.907 27 H 0.045 0.955 28 H 0.051 0.949 29 H 0.087 0.913 30 H 0.050 0.950 31 H 0.071 0.929 32 H 0.055 0.945 33 H 0.069 0.931 34 H 0.057 0.943 35 H 0.054 0.946 36 H 0.056 0.944 37 H 0.059 0.941 38 H 0.064 0.936 39 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.947 -4.419 -2.303 10.241 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.019 4.019 2 N -0.164 5.164 3 C -0.463 4.463 4 H 0.141 0.859 5 C -0.174 4.174 6 N -0.515 5.515 7 Si 0.745 3.255 8 H -0.192 1.192 9 H -0.206 1.206 10 H -0.207 1.207 11 C 0.250 3.750 12 O -0.499 6.499 13 C -0.056 4.056 14 C -0.215 4.215 15 C -0.211 4.211 16 C -0.078 4.078 17 C -0.162 4.162 18 C -0.160 4.160 19 C -0.163 4.163 20 C -0.155 4.155 21 H 0.050 0.950 22 H 0.082 0.918 23 H 0.078 0.922 24 H 0.076 0.924 25 H 0.067 0.933 26 H 0.112 0.888 27 H 0.064 0.936 28 H 0.070 0.930 29 H 0.105 0.895 30 H 0.069 0.931 31 H 0.090 0.910 32 H 0.074 0.926 33 H 0.087 0.913 34 H 0.075 0.925 35 H 0.073 0.927 36 H 0.075 0.925 37 H 0.078 0.922 38 H 0.083 0.917 39 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges 8.460 -4.738 -2.237 9.951 hybrid contribution 0.320 1.026 -0.052 1.076 sum 8.781 -3.712 -2.289 9.804 Atomic orbital electron populations 1.21480 0.80176 0.97189 1.03073 1.43668 1.05983 1.04801 1.61942 1.20331 0.93290 0.82730 1.49975 0.85896 1.25330 0.95729 0.99642 0.96710 1.70242 1.06884 1.26819 1.47565 0.85989 0.79538 0.81875 0.78103 1.19156 1.20598 1.20689 1.19858 0.88800 0.83527 0.82825 1.90477 1.70100 1.31737 1.57623 1.20324 0.93603 0.95071 0.96630 1.22198 0.99791 1.02998 0.96472 1.22240 0.99768 1.02965 0.96122 1.21691 0.92960 0.94486 0.98658 1.22334 0.96615 0.98377 0.98874 1.22111 0.97350 0.97513 0.98982 1.22376 0.95368 0.98451 1.00144 1.22620 0.98888 0.96422 0.97526 0.94976 0.91846 0.92184 0.92445 0.93282 0.88813 0.93560 0.92991 0.89478 0.93147 0.91012 0.92577 0.91277 0.92462 0.92694 0.92519 0.92218 0.91710 0.90533 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.12 3.17 8.85 59.85 0.53 3.70 16 2 N -0.45 -11.39 3.02 -122.20 -0.37 -11.76 16 3 C -0.34 -8.27 6.86 -14.93 -0.10 -8.37 16 4 H 0.12 2.79 2.95 -52.49 -0.16 2.64 16 5 C 0.03 0.73 5.41 -17.47 -0.09 0.63 16 6 N -0.88 -22.80 9.53 55.50 0.53 -22.27 16 7 Si 0.92 19.15 29.56 -169.99 -5.02 14.13 16 8 H -0.27 -5.32 7.11 56.52 0.40 -4.92 16 9 H -0.28 -5.90 7.11 56.52 0.40 -5.50 16 10 H -0.28 -5.91 7.11 56.52 0.40 -5.51 16 11 C 0.46 11.21 6.21 -10.99 -0.07 11.14 16 12 O -0.61 -16.23 13.90 5.54 0.08 -16.16 16 13 C -0.05 -1.05 0.30 -155.66 -0.05 -1.09 16 14 C -0.16 -2.91 7.70 37.16 0.29 -2.62 16 15 C -0.15 -2.81 7.39 37.16 0.27 -2.54 16 16 C -0.06 -1.05 1.79 -88.92 -0.16 -1.21 16 17 C -0.12 -1.79 5.30 -25.61 -0.14 -1.93 16 18 C -0.12 -1.57 6.80 -25.61 -0.17 -1.74 16 19 C -0.13 -1.76 6.83 -25.07 -0.17 -1.93 16 20 C -0.12 -2.03 5.48 -24.69 -0.14 -2.16 16 21 H 0.03 0.81 6.95 -51.93 -0.36 0.44 16 22 H 0.06 1.69 7.05 -51.93 -0.37 1.32 16 23 H 0.06 1.56 7.07 -51.93 -0.37 1.20 16 24 H 0.26 6.55 8.31 -40.82 -0.34 6.21 16 25 H 0.05 0.77 7.40 -51.93 -0.38 0.38 16 26 H 0.09 1.91 4.75 -51.93 -0.25 1.66 16 27 H 0.05 0.84 8.12 -51.93 -0.42 0.42 16 28 H 0.05 0.96 6.35 -51.93 -0.33 0.64 16 29 H 0.09 1.71 4.90 -51.93 -0.25 1.45 16 30 H 0.05 0.78 5.94 -51.93 -0.31 0.48 16 31 H 0.07 1.39 8.02 -51.93 -0.42 0.98 16 32 H 0.06 0.76 8.14 -51.93 -0.42 0.34 16 33 H 0.07 0.97 5.43 -51.93 -0.28 0.69 16 34 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 35 H 0.05 0.63 8.14 -51.93 -0.42 0.21 16 36 H 0.06 0.71 8.14 -51.93 -0.42 0.29 16 37 H 0.06 0.81 8.14 -51.93 -0.42 0.39 16 38 H 0.06 1.13 5.77 -51.93 -0.30 0.83 16 39 H 0.08 1.51 7.07 -51.93 -0.37 1.14 16 LS Contribution 283.03 15.07 4.27 4.27 Total: -1.00 -27.56 283.03 -6.33 -33.89 By element: Atomic # 1 Polarization: 11.84 SS G_CDS: -5.81 Total: 6.03 kcal Atomic # 6 Polarization: -8.12 SS G_CDS: 0.00 Total: -8.12 kcal Atomic # 7 Polarization: -34.19 SS G_CDS: 0.16 Total: -34.03 kcal Atomic # 8 Polarization: -16.23 SS G_CDS: 0.08 Total: -16.16 kcal Atomic # 14 Polarization: 19.15 SS G_CDS: -5.02 Total: 14.13 kcal Total LS contribution 4.27 Total: 4.27 kcal Total: -27.56 -6.33 -33.89 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000336630160.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 4.799 kcal (2) G-P(sol) polarization free energy of solvation -27.560 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -22.761 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.328 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.888 kcal (6) G-S(sol) free energy of system = (1) + (5) -29.089 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds