Wall clock time and date at job start Thu Apr 9 2020 12:09:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46502 * 1 3 3 C 1.37100 * 119.99903 * 2 1 4 4 H 1.07994 * 120.00148 * 182.26813 * 3 2 1 5 5 C 1.38952 * 119.99819 * 2.26425 * 3 2 1 6 6 N 1.31416 * 120.00118 * 7.62640 * 5 3 2 7 7 Si 1.86798 * 120.00062 * 187.62062 * 5 3 2 8 8 H 1.48504 * 109.47226 * 0.02562 * 7 5 3 9 9 H 1.48499 * 109.47000 * 120.00006 * 7 5 3 10 10 H 1.48501 * 109.47503 * 240.00375 * 7 5 3 11 11 C 1.34777 * 120.00507 * 179.97438 * 2 1 3 12 12 O 1.21296 * 119.99512 * 354.64232 * 11 2 1 13 13 C 1.50696 * 120.00337 * 174.64484 * 11 2 1 14 14 C 1.53003 * 109.47185 * 62.75290 * 13 11 2 15 15 C 1.53002 * 109.47047 * 302.75430 * 13 11 2 16 16 C 1.52993 * 109.47196 * 182.75338 * 13 11 2 17 17 C 1.54271 * 110.48965 * 179.97438 * 16 13 11 18 18 C 1.53872 * 106.64351 * 217.73693 * 17 16 13 19 19 C 1.54267 * 106.59941 * 359.97438 * 18 17 16 20 20 C 1.54892 * 104.19551 * 23.60853 * 19 18 17 21 21 H 1.08998 * 109.46406 * 174.46362 * 1 2 3 22 22 H 1.08997 * 109.47138 * 294.46567 * 1 2 3 23 23 H 1.08997 * 109.46926 * 54.46623 * 1 2 3 24 24 H 0.96996 * 120.00075 * 180.02562 * 6 5 3 25 25 H 1.09004 * 109.47012 * 189.59335 * 14 13 11 26 26 H 1.09002 * 109.46962 * 309.59466 * 14 13 11 27 27 H 1.09000 * 109.46943 * 69.59596 * 14 13 11 28 28 H 1.09004 * 109.46734 * 305.95270 * 15 13 11 29 29 H 1.08997 * 109.47271 * 65.94979 * 15 13 11 30 30 H 1.08998 * 109.46922 * 185.95237 * 15 13 11 31 31 H 1.09000 * 110.54342 * 302.61623 * 16 13 11 32 32 H 1.08999 * 110.02517 * 98.42664 * 17 16 13 33 33 H 1.08998 * 110.02779 * 337.05089 * 17 16 13 34 34 H 1.09000 * 110.02967 * 119.25839 * 18 17 16 35 35 H 1.08993 * 110.03121 * 240.64105 * 18 17 16 36 36 H 1.08997 * 110.48456 * 142.28823 * 19 18 17 37 37 H 1.09005 * 110.48184 * 264.93099 * 19 18 17 38 38 H 1.08995 * 110.75556 * 80.37127 * 20 19 18 39 39 H 1.09004 * 110.75216 * 203.56483 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1505 1.1873 0.0000 4 1 3.2298 1.1877 -0.0370 5 6 1.4565 2.3902 0.0475 6 7 0.1570 2.3918 0.2432 7 14 2.3707 4.0050 -0.1665 8 1 3.8160 3.7323 -0.3718 9 1 1.8311 4.7266 -1.3470 10 1 2.1918 4.8400 1.0484 11 6 2.1390 -1.1671 0.0005 12 8 1.5365 -2.2153 0.0991 13 6 3.6410 -1.1700 -0.1213 14 6 4.2518 -0.4508 1.0832 15 6 4.0498 -0.4485 -1.4071 16 6 4.1465 -2.6134 -0.1636 17 6 5.6838 -2.6437 -0.2889 18 6 6.0268 -3.8173 -1.2231 19 6 4.6859 -4.4606 -1.6331 20 6 3.6476 -3.3267 -1.4457 21 1 -0.3632 -1.0229 -0.0991 22 1 -0.3633 0.4256 0.9354 23 1 -0.3633 0.5972 -0.8363 24 1 -0.3275 3.2314 0.2760 25 1 5.3184 -0.3021 0.9151 26 1 3.7661 0.5163 1.2136 27 1 4.1059 -1.0544 1.9791 28 1 3.5309 -0.8955 -2.2551 29 1 3.7832 0.6057 -1.3327 30 1 5.1264 -0.5419 -1.5495 31 1 3.8250 -3.1574 0.7245 32 1 6.1351 -2.8019 0.6906 33 1 6.0419 -1.7079 -0.7180 34 1 6.5506 -3.4510 -2.1060 35 1 6.6453 -4.5446 -0.6973 36 1 4.7187 -4.7797 -2.6748 37 1 4.4523 -5.3032 -0.9822 38 1 3.6620 -2.6453 -2.2963 39 1 2.6489 -3.7379 -1.2987 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000336630160.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 12:09:26 Heat of formation + Delta-G solvation = -43.965798 kcal Electronic energy + Delta-G solvation = -18693.710770 eV Core-core repulsion = 16022.008923 eV Total energy + Delta-G solvation = -2671.701847 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 239.163 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -41.39498 -38.84774 -36.73928 -35.13421 -33.22501 -29.61374 -29.08560 -27.99434 -27.70167 -26.65516 -23.57309 -21.39900 -20.92953 -19.78226 -18.94881 -17.37551 -16.73779 -16.21745 -15.88020 -15.77109 -15.53785 -14.73765 -14.71923 -14.30644 -14.10731 -13.48902 -13.36678 -13.13241 -12.83836 -12.77972 -12.60381 -12.50861 -12.16670 -12.00791 -11.91377 -11.80497 -11.73795 -11.58849 -11.17862 -11.03690 -10.94767 -10.82718 -9.97987 -9.83669 -8.16542 -5.79504 1.43365 1.48999 1.61229 2.11355 2.31374 3.04561 3.23118 3.77765 3.86068 3.93803 4.21253 4.31941 4.36392 4.59444 4.66574 4.74211 4.82559 4.84876 4.89474 4.93282 4.96950 5.03390 5.11529 5.15830 5.18498 5.25517 5.28891 5.31951 5.39137 5.42304 5.45243 5.56745 5.63678 5.70750 5.77134 5.87650 6.49111 7.17877 7.69335 8.08081 8.79845 Molecular weight = 239.16amu Principal moments of inertia in cm(-1) A = 0.033724 B = 0.008096 C = 0.007084 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 830.057761 B = 3457.734883 C = 3951.773032 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.139 3.861 2 N -0.463 5.463 3 C -0.346 4.346 4 H 0.146 0.854 5 C -0.021 4.021 6 N -0.911 5.911 7 Si 0.987 3.013 8 H -0.244 1.244 9 H -0.283 1.283 10 H -0.284 1.284 11 C 0.448 3.552 12 O -0.643 6.643 13 C -0.051 4.051 14 C -0.152 4.152 15 C -0.147 4.147 16 C -0.061 4.061 17 C -0.118 4.118 18 C -0.116 4.116 19 C -0.121 4.121 20 C -0.120 4.120 21 H 0.025 0.975 22 H 0.048 0.952 23 H 0.050 0.950 24 H 0.265 0.735 25 H 0.086 0.914 26 H 0.074 0.926 27 H 0.040 0.960 28 H 0.041 0.959 29 H 0.074 0.926 30 H 0.087 0.913 31 H 0.046 0.954 32 H 0.068 0.932 33 H 0.080 0.920 34 H 0.074 0.926 35 H 0.073 0.927 36 H 0.072 0.928 37 H 0.058 0.942 38 H 0.063 0.937 39 H 0.038 0.962 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.436 -4.046 -2.933 13.402 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.005 4.005 2 N -0.180 5.180 3 C -0.472 4.472 4 H 0.162 0.838 5 C -0.221 4.221 6 N -0.552 5.552 7 Si 0.810 3.190 8 H -0.167 1.167 9 H -0.209 1.209 10 H -0.210 1.210 11 C 0.239 3.761 12 O -0.533 6.533 13 C -0.054 4.054 14 C -0.209 4.209 15 C -0.204 4.204 16 C -0.080 4.080 17 C -0.155 4.155 18 C -0.154 4.154 19 C -0.158 4.158 20 C -0.158 4.158 21 H 0.043 0.957 22 H 0.066 0.934 23 H 0.069 0.931 24 H 0.075 0.925 25 H 0.104 0.896 26 H 0.093 0.907 27 H 0.059 0.941 28 H 0.060 0.940 29 H 0.092 0.908 30 H 0.105 0.895 31 H 0.065 0.935 32 H 0.087 0.913 33 H 0.098 0.902 34 H 0.093 0.907 35 H 0.092 0.908 36 H 0.091 0.909 37 H 0.077 0.923 38 H 0.081 0.919 39 H 0.057 0.943 Dipole moment (debyes) X Y Z Total from point charges 11.970 -4.376 -2.867 13.063 hybrid contribution -0.867 0.835 0.168 1.216 sum 11.103 -3.540 -2.698 11.962 Atomic orbital electron populations 1.21209 0.81338 0.96175 1.01776 1.43972 1.05738 1.05924 1.62345 1.20854 0.94364 0.82358 1.49637 0.83771 1.26278 0.96502 1.03017 0.96274 1.70368 1.08491 1.27609 1.48697 0.84944 0.79473 0.77138 0.77440 1.16735 1.20929 1.20975 1.20886 0.91121 0.82591 0.81538 1.90451 1.71423 1.32766 1.58631 1.20384 0.89862 0.97013 0.98099 1.22142 1.01721 1.01432 0.95626 1.22178 1.01942 1.01537 0.94720 1.21676 0.95888 0.92708 0.97683 1.22305 0.93197 0.99738 1.00260 1.22104 0.96620 0.97167 0.99495 1.22349 0.94998 0.97169 1.01302 1.22568 0.98110 0.97707 0.97378 0.95665 0.93379 0.93143 0.92523 0.89554 0.90746 0.94070 0.93956 0.90757 0.89489 0.93515 0.91319 0.90166 0.90701 0.90818 0.90919 0.92284 0.91875 0.94306 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.14 7.45 8.85 127.77 1.13 8.58 16 2 N -0.46 -24.16 3.02 -658.90 -1.99 -26.16 16 3 C -0.35 -16.96 6.86 84.04 0.58 -16.39 16 4 H 0.15 6.33 2.95 -2.91 -0.01 6.32 16 5 C -0.02 -1.04 5.41 84.93 0.46 -0.58 16 6 N -0.91 -48.49 9.53 21.66 0.21 -48.28 16 7 Si 0.99 38.51 29.56 68.60 2.03 40.54 16 8 H -0.24 -8.57 7.11 99.48 0.71 -7.86 16 9 H -0.28 -11.15 7.11 99.48 0.71 -10.44 16 10 H -0.28 -11.14 7.11 99.48 0.71 -10.44 16 11 C 0.45 22.22 6.21 87.66 0.54 22.76 16 12 O -0.64 -35.51 13.90 -3.08 -0.04 -35.55 16 13 C -0.05 -1.93 0.30 -52.93 -0.02 -1.95 16 14 C -0.15 -5.29 7.70 71.98 0.55 -4.74 16 15 C -0.15 -5.02 7.39 71.98 0.53 -4.49 16 16 C -0.06 -2.07 1.79 -9.69 -0.02 -2.09 16 17 C -0.12 -2.92 5.30 31.32 0.17 -2.76 16 18 C -0.12 -2.49 6.80 31.32 0.21 -2.27 16 19 C -0.12 -3.08 6.83 31.67 0.22 -2.87 16 20 C -0.12 -4.10 5.48 31.91 0.17 -3.92 16 21 H 0.02 1.33 6.95 -2.39 -0.02 1.32 16 22 H 0.05 2.68 7.05 -2.39 -0.02 2.67 16 23 H 0.05 2.75 7.07 -2.39 -0.02 2.73 16 24 H 0.26 13.38 8.31 -92.71 -0.77 12.61 16 25 H 0.09 2.35 7.40 -2.38 -0.02 2.33 16 26 H 0.07 2.90 4.75 -2.39 -0.01 2.89 16 27 H 0.04 1.44 8.12 -2.39 -0.02 1.42 16 28 H 0.04 1.51 6.35 -2.38 -0.02 1.49 16 29 H 0.07 2.74 4.90 -2.39 -0.01 2.73 16 30 H 0.09 2.32 5.94 -2.39 -0.01 2.31 16 31 H 0.05 1.81 8.02 -2.39 -0.02 1.79 16 32 H 0.07 1.56 8.14 -2.39 -0.02 1.54 16 33 H 0.08 1.83 5.43 -2.39 -0.01 1.81 16 34 H 0.07 1.38 8.14 -2.39 -0.02 1.36 16 35 H 0.07 1.35 8.14 -2.39 -0.02 1.33 16 36 H 0.07 1.63 8.14 -2.39 -0.02 1.61 16 37 H 0.06 1.50 8.14 -2.38 -0.02 1.48 16 38 H 0.06 2.14 5.77 -2.39 -0.01 2.13 16 39 H 0.04 1.58 7.07 -2.39 -0.02 1.57 16 Total: -1.00 -61.24 283.03 5.78 -55.46 By element: Atomic # 1 Polarization: 23.66 SS G_CDS: 1.04 Total: 24.70 kcal Atomic # 6 Polarization: -15.25 SS G_CDS: 4.53 Total: -10.72 kcal Atomic # 7 Polarization: -72.65 SS G_CDS: -1.79 Total: -74.44 kcal Atomic # 8 Polarization: -35.51 SS G_CDS: -0.04 Total: -35.55 kcal Atomic # 14 Polarization: 38.51 SS G_CDS: 2.03 Total: 40.54 kcal Total: -61.24 5.78 -55.46 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000336630160.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 11.497 kcal (2) G-P(sol) polarization free energy of solvation -61.239 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -49.741 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.775 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -55.463 kcal (6) G-S(sol) free energy of system = (1) + (5) -43.966 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds