Wall clock time and date at job start Thu Apr 9 2020 12:09:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.53003 * 109.47273 * 2 1 4 4 C 1.52997 * 109.47271 * 179.97438 * 3 2 1 5 5 C 1.53003 * 109.47234 * 179.97438 * 4 3 2 6 6 H 1.09002 * 109.46514 * 55.00207 * 5 4 3 7 7 C 1.52990 * 109.47172 * 295.00608 * 5 4 3 8 8 C 1.50703 * 109.47115 * 174.99904 * 5 4 3 9 9 O 1.21287 * 119.99780 * 24.40104 * 8 5 4 10 10 N 1.34776 * 119.99534 * 204.39739 * 8 5 4 11 11 C 1.37100 * 119.99425 * 184.95203 * 10 8 5 12 12 H 1.07996 * 120.00243 * 135.87044 * 11 10 8 13 13 C 1.38956 * 119.99778 * 315.86136 * 11 10 8 14 14 N 1.31410 * 119.99566 * 159.70617 * 13 11 10 15 15 Si 1.86792 * 120.00278 * 339.70938 * 13 11 10 16 16 H 1.48506 * 109.47382 * 95.25652 * 15 13 11 17 17 H 1.48500 * 109.47286 * 215.26087 * 15 13 11 18 18 H 1.48504 * 109.47369 * 335.25878 * 15 13 11 19 19 C 1.46495 * 120.00355 * 4.94924 * 10 8 5 20 20 C 1.53005 * 117.49874 * 246.39670 * 19 10 8 21 21 C 1.53002 * 117.49548 * 177.73755 * 19 10 8 22 22 H 1.08994 * 109.47574 * 300.00231 * 1 2 3 23 23 H 1.09002 * 109.46889 * 59.99943 * 1 2 3 24 24 H 1.09000 * 109.47342 * 179.97438 * 1 2 3 25 25 H 1.08994 * 109.47574 * 239.99769 * 2 1 3 26 26 H 1.09003 * 109.47401 * 119.99944 * 2 1 3 27 27 H 1.09002 * 109.46881 * 59.99748 * 3 2 1 28 28 H 1.09002 * 109.47210 * 299.99860 * 3 2 1 29 29 H 1.09002 * 109.47212 * 300.00254 * 4 3 2 30 30 H 1.09002 * 109.47051 * 60.00247 * 4 3 2 31 31 H 1.09002 * 109.47078 * 176.36967 * 7 5 4 32 32 H 1.09006 * 109.47240 * 296.36566 * 7 5 4 33 33 H 1.08996 * 109.47979 * 56.36890 * 7 5 4 34 34 H 0.97004 * 119.99983 * 180.02562 * 14 13 11 35 35 H 1.09000 * 115.54952 * 32.07097 * 19 10 8 36 36 H 1.08995 * 117.49789 * 0.02562 * 20 19 10 37 37 H 1.08996 * 117.49519 * 145.02368 * 20 19 10 38 38 H 1.09003 * 117.49997 * 214.98118 * 21 19 10 39 39 H 1.09000 * 117.50266 * 359.97438 * 21 19 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5700 1.4425 0.0006 5 6 4.0800 2.8850 0.0000 6 1 3.6450 3.4245 0.8414 7 6 3.6757 3.5683 -1.3078 8 6 5.5819 2.8869 0.1245 9 8 6.2209 1.9186 -0.2293 10 7 6.2148 3.9645 0.6289 11 6 7.5850 4.0078 0.6485 12 1 8.1012 4.9086 0.3510 13 6 8.3096 2.8926 1.0512 14 7 9.5721 2.7702 0.7075 15 14 7.4892 1.5676 2.0809 16 1 7.0003 0.4823 1.1930 17 1 8.4712 1.0123 3.0467 18 1 6.3439 2.1546 2.8219 19 6 5.4389 5.0896 1.1562 20 6 5.5250 6.4205 0.4062 21 6 6.2150 6.2602 1.7632 22 1 -0.3634 0.5138 0.8899 23 1 -0.3633 0.5139 -0.8900 24 1 -0.3634 -1.0276 -0.0005 25 1 1.8934 -0.5138 -0.8899 26 1 1.8933 -0.5138 0.8900 27 1 1.6766 1.9563 0.8900 28 1 1.6767 1.9564 -0.8900 29 1 3.9330 0.9288 0.8908 30 1 3.9337 0.9286 -0.8891 31 1 3.9826 4.6139 -1.2814 32 1 4.1626 3.0679 -2.1449 33 1 2.5941 3.5101 -1.4290 34 1 10.0779 1.9915 0.9883 35 1 4.4832 4.8294 1.6114 36 1 6.1587 6.4587 -0.4798 37 1 4.6262 7.0358 0.3682 38 1 5.7697 6.7703 2.6175 39 1 7.3029 6.1930 1.7706 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000337429996.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 12:09:27 Heat of formation + Delta-G solvation = -41.869158 kcal Electronic energy + Delta-G solvation = -18040.217395 eV Core-core repulsion = 15368.606465 eV Total energy + Delta-G solvation = -2671.610930 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 239.163 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -41.12590 -38.23830 -37.20434 -34.96849 -34.18697 -33.23381 -29.57867 -27.41598 -25.72765 -23.69060 -23.05987 -22.54579 -21.80539 -20.56760 -18.78376 -17.87468 -17.08559 -16.61481 -16.07844 -15.74854 -15.47010 -15.03103 -14.77811 -14.66897 -14.25504 -14.01112 -13.53198 -13.37611 -13.07715 -12.94759 -12.58762 -12.45958 -12.21331 -12.14586 -12.10850 -11.82428 -11.77976 -11.59789 -11.50360 -11.30917 -11.17593 -10.75139 -10.15703 -9.35730 -8.43633 -6.18845 1.18480 1.30925 1.46237 1.95266 2.41980 2.64512 2.96645 3.20720 3.74748 3.83303 3.97872 4.06122 4.16755 4.23256 4.30199 4.37495 4.40806 4.55962 4.64958 4.81757 4.87535 4.89361 4.93434 5.00431 5.04474 5.06714 5.15024 5.23923 5.25506 5.33573 5.41481 5.46685 5.50540 5.55004 5.70020 5.86021 6.78080 6.92554 7.36387 7.91703 8.65165 Molecular weight = 239.16amu Principal moments of inertia in cm(-1) A = 0.022318 B = 0.008622 C = 0.006920 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1254.295654 B = 3246.652693 C = 4044.987953 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.130 4.130 3 C -0.108 4.108 4 C -0.101 4.101 5 C -0.098 4.098 6 H 0.108 0.892 7 C -0.128 4.128 8 C 0.451 3.549 9 O -0.594 6.594 10 N -0.455 5.455 11 C -0.339 4.339 12 H 0.065 0.935 13 C 0.044 3.956 14 N -0.913 5.913 15 Si 0.962 3.038 16 H -0.280 1.280 17 H -0.306 1.306 18 H -0.265 1.265 19 C 0.041 3.959 20 C -0.173 4.173 21 C -0.174 4.174 22 H 0.060 0.940 23 H 0.061 0.939 24 H 0.056 0.944 25 H 0.054 0.946 26 H 0.051 0.949 27 H 0.075 0.925 28 H 0.082 0.918 29 H 0.035 0.965 30 H 0.049 0.951 31 H 0.064 0.936 32 H 0.036 0.964 33 H 0.099 0.901 34 H 0.271 0.729 35 H 0.145 0.855 36 H 0.068 0.932 37 H 0.135 0.865 38 H 0.127 0.873 39 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.858 2.827 1.084 20.088 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.168 4.168 3 C -0.146 4.146 4 C -0.139 4.139 5 C -0.119 4.119 6 H 0.126 0.874 7 C -0.185 4.185 8 C 0.243 3.757 9 O -0.479 6.479 10 N -0.175 5.175 11 C -0.466 4.466 12 H 0.083 0.917 13 C -0.159 4.159 14 N -0.551 5.551 15 Si 0.792 3.208 16 H -0.208 1.208 17 H -0.235 1.235 18 H -0.189 1.189 19 C -0.063 4.063 20 C -0.211 4.211 21 C -0.212 4.212 22 H 0.079 0.921 23 H 0.080 0.920 24 H 0.075 0.925 25 H 0.073 0.927 26 H 0.070 0.930 27 H 0.094 0.906 28 H 0.101 0.899 29 H 0.054 0.946 30 H 0.067 0.933 31 H 0.083 0.917 32 H 0.055 0.945 33 H 0.118 0.882 34 H 0.080 0.920 35 H 0.162 0.838 36 H 0.086 0.914 37 H 0.153 0.847 38 H 0.145 0.855 39 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges -19.361 2.286 0.914 19.517 hybrid contribution 1.018 -0.852 0.317 1.365 sum -18.343 1.434 1.231 18.440 Atomic orbital electron populations 1.21731 0.94234 1.01979 1.02403 1.21559 0.97063 0.96696 1.01442 1.21635 0.92087 0.97402 1.03448 1.21417 0.97194 0.94330 1.00934 1.21313 0.89422 0.99028 1.02136 0.87427 1.21682 1.02934 1.00110 0.93808 1.21548 0.91750 0.83616 0.78790 1.90478 1.68965 1.35443 1.53020 1.43357 1.04667 1.16274 1.53230 1.18552 0.80546 1.00963 1.46506 0.91723 1.25934 0.94961 0.99442 0.95597 1.69846 1.10952 1.30463 1.43865 0.85518 0.77915 0.80871 0.76475 1.20761 1.23499 1.18928 1.22184 0.97555 0.82964 1.03627 1.23321 1.03473 0.99346 0.94964 1.23203 0.99680 1.00517 0.97780 0.92134 0.91976 0.92503 0.92744 0.93046 0.90633 0.89949 0.94640 0.93264 0.91719 0.94485 0.88215 0.91990 0.83822 0.91361 0.84734 0.85498 0.90804 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.28 9.91 71.98 0.71 -1.56 16 2 C -0.13 -2.69 5.93 30.59 0.18 -2.51 16 3 C -0.11 -2.35 4.97 30.59 0.15 -2.19 16 4 C -0.10 -3.22 4.12 30.59 0.13 -3.09 16 5 C -0.10 -3.25 2.09 -11.54 -0.02 -3.27 16 6 H 0.11 2.94 6.21 -2.39 -0.01 2.93 16 7 C -0.13 -3.49 9.01 71.98 0.65 -2.84 16 8 C 0.45 21.49 5.22 87.66 0.46 21.94 16 9 O -0.59 -34.35 11.56 -3.05 -0.04 -34.38 16 10 N -0.45 -21.85 2.46 -613.13 -1.51 -23.36 16 11 C -0.34 -19.77 8.45 84.04 0.71 -19.06 16 12 H 0.07 4.03 7.37 -2.91 -0.02 4.01 16 13 C 0.04 2.75 4.83 84.93 0.41 3.16 16 14 N -0.91 -59.37 13.96 21.66 0.30 -59.07 16 15 Si 0.96 53.03 24.91 68.60 1.71 54.74 16 16 H -0.28 -16.47 6.31 99.48 0.63 -15.85 16 17 H -0.31 -16.30 7.11 99.48 0.71 -15.60 16 18 H -0.26 -13.56 7.11 99.48 0.71 -12.85 16 19 C 0.04 1.43 5.72 44.99 0.26 1.68 16 20 C -0.17 -5.07 10.38 30.62 0.32 -4.75 16 21 C -0.17 -5.66 9.80 30.62 0.30 -5.36 16 22 H 0.06 0.86 8.14 -2.39 -0.02 0.84 16 23 H 0.06 0.86 8.14 -2.39 -0.02 0.84 16 24 H 0.06 0.82 8.14 -2.39 -0.02 0.80 16 25 H 0.05 1.19 8.14 -2.39 -0.02 1.17 16 26 H 0.05 1.14 8.14 -2.39 -0.02 1.12 16 27 H 0.08 1.42 8.14 -2.39 -0.02 1.40 16 28 H 0.08 1.51 6.49 -2.39 -0.02 1.49 16 29 H 0.03 1.28 8.14 -2.39 -0.02 1.26 16 30 H 0.05 1.77 8.03 -2.39 -0.02 1.75 16 31 H 0.06 1.71 8.05 -2.39 -0.02 1.69 16 32 H 0.04 1.16 8.14 -2.38 -0.02 1.14 16 33 H 0.10 1.92 6.40 -2.39 -0.02 1.90 16 34 H 0.27 16.69 8.31 -92.71 -0.77 15.92 16 35 H 0.14 3.96 6.44 -2.39 -0.02 3.94 16 36 H 0.07 2.38 8.14 -2.39 -0.02 2.36 16 37 H 0.13 2.72 8.14 -2.39 -0.02 2.70 16 38 H 0.13 3.09 8.14 -2.39 -0.02 3.07 16 39 H 0.07 2.99 6.69 -2.39 -0.02 2.97 16 Total: -1.00 -76.56 307.38 5.64 -70.91 By element: Atomic # 1 Polarization: 8.09 SS G_CDS: 0.92 Total: 9.01 kcal Atomic # 6 Polarization: -22.11 SS G_CDS: 4.25 Total: -17.86 kcal Atomic # 7 Polarization: -81.23 SS G_CDS: -1.20 Total: -82.43 kcal Atomic # 8 Polarization: -34.35 SS G_CDS: -0.04 Total: -34.38 kcal Atomic # 14 Polarization: 53.03 SS G_CDS: 1.71 Total: 54.74 kcal Total: -76.56 5.64 -70.91 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000337429996.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 29.046 kcal (2) G-P(sol) polarization free energy of solvation -76.557 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -47.511 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.642 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.915 kcal (6) G-S(sol) free energy of system = (1) + (5) -41.869 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds