Wall clock time and date at job start Thu Apr 9 2020 12:09:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46506 * 1 3 3 C 1.46499 * 119.99537 * 2 1 4 4 C 1.50697 * 109.46949 * 269.99553 * 3 2 1 5 5 H 1.08004 * 120.00186 * 0.02562 * 4 3 2 6 6 C 1.37881 * 120.00081 * 180.02562 * 4 3 2 7 7 N 1.31519 * 120.00096 * 0.02562 * 6 4 3 8 8 Si 1.86802 * 120.00103 * 180.02562 * 6 4 3 9 9 H 1.48498 * 109.46927 * 59.99717 * 8 6 4 10 10 H 1.48496 * 109.47287 * 179.97438 * 8 6 4 11 11 H 1.48501 * 109.47040 * 299.99940 * 8 6 4 12 12 C 1.34777 * 120.00264 * 179.97438 * 2 1 3 13 13 O 1.21283 * 119.99750 * 180.02562 * 12 2 1 14 14 C 1.50702 * 119.99928 * 0.28128 * 12 2 1 15 15 C 1.52996 * 109.47159 * 179.72352 * 14 12 2 16 16 C 1.53002 * 109.46949 * 300.00134 * 15 14 12 17 17 C 1.53006 * 109.47352 * 59.99543 * 15 14 12 18 18 C 1.52994 * 109.47118 * 179.97438 * 15 14 12 19 19 C 1.52999 * 117.49768 * 248.74286 * 18 15 14 20 20 C 1.53005 * 117.49709 * 180.08273 * 18 15 14 21 21 H 1.08998 * 109.46921 * 269.99744 * 1 2 3 22 22 H 1.08994 * 109.46996 * 30.00327 * 1 2 3 23 23 H 1.09001 * 109.46578 * 150.00190 * 1 2 3 24 24 H 1.09001 * 109.47567 * 29.99407 * 3 2 1 25 25 H 1.09005 * 109.47076 * 149.99913 * 3 2 1 26 26 H 0.96991 * 119.99957 * 180.02562 * 7 6 4 27 27 H 1.09004 * 109.46965 * 299.72211 * 14 12 2 28 28 H 1.08994 * 109.46990 * 59.72065 * 14 12 2 29 29 H 1.08994 * 109.47439 * 59.99953 * 16 15 14 30 30 H 1.09001 * 109.47432 * 180.02562 * 16 15 14 31 31 H 1.09008 * 109.46768 * 299.99629 * 16 15 14 32 32 H 1.08996 * 109.46527 * 60.00105 * 17 15 14 33 33 H 1.09001 * 109.46925 * 180.02562 * 17 15 14 34 34 H 1.09003 * 109.47167 * 300.00441 * 17 15 14 35 35 H 1.09000 * 115.55183 * 34.41950 * 18 15 14 36 36 H 1.09002 * 117.50063 * 0.02562 * 19 18 15 37 37 H 1.09003 * 117.49804 * 145.02570 * 19 18 15 38 38 H 1.08999 * 117.50068 * 214.97430 * 20 18 15 39 39 H 1.08996 * 117.49806 * 0.02562 * 20 18 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 6 2.1974 1.2688 0.0000 4 6 2.4486 1.7037 -1.4208 5 1 2.0975 1.0961 -2.2417 6 6 3.1268 2.8775 -1.6728 7 7 3.5549 3.6172 -0.6732 8 14 3.4376 3.4170 -3.4340 9 1 2.1398 3.5952 -4.1334 10 1 4.1801 4.7030 -3.4341 11 1 4.2394 2.3819 -4.1346 12 6 2.1390 -1.1672 0.0005 13 8 3.3518 -1.1671 0.0010 14 6 1.3855 -2.4723 -0.0053 15 6 2.3798 -3.6352 -0.0104 16 6 3.2595 -3.5485 -1.2592 17 6 3.2595 -3.5596 1.2393 18 6 1.6149 -4.9601 -0.0156 19 6 1.6882 -5.8231 1.2456 20 6 2.4371 -6.2505 -0.0192 21 1 -0.3633 0.0000 1.0277 22 1 -0.3633 0.8899 -0.5139 23 1 -0.3632 -0.8900 -0.5138 24 1 1.6083 2.0285 0.5137 25 1 3.1499 1.1385 0.5139 26 1 4.0317 4.4431 -0.8505 27 1 0.7588 -2.5340 0.8844 28 1 0.7590 -2.5261 -0.8955 29 1 3.8045 -2.6046 -1.2550 30 1 3.9676 -4.3772 -1.2631 31 1 2.6328 -3.6024 -2.1495 32 1 2.6328 -3.6213 2.1289 33 1 3.9681 -4.3878 1.2353 34 1 3.8044 -2.6156 1.2434 35 1 0.6771 -4.9594 -0.5712 36 1 2.2810 -5.4468 2.0793 37 1 0.7987 -6.3905 1.5196 38 1 2.0400 -7.0988 -0.5767 39 1 3.5229 -6.1554 -0.0174 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000339125524.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 12:09:32 Heat of formation + Delta-G solvation = -18.711531 kcal Electronic energy + Delta-G solvation = -17834.306250 eV Core-core repulsion = 15163.699509 eV Total energy + Delta-G solvation = -2670.606740 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 239.163 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -39.80394 -37.94672 -34.90848 -33.24262 -32.55443 -28.68033 -27.09144 -27.00808 -25.51334 -23.55234 -22.24803 -22.16643 -18.56755 -17.93738 -16.57663 -16.45353 -15.62306 -15.15516 -14.84074 -14.45602 -14.07004 -13.43173 -13.31786 -12.72824 -12.65768 -12.18016 -12.07150 -11.75133 -11.55831 -11.41108 -11.20161 -11.04095 -10.87911 -10.73410 -10.68742 -10.53288 -10.46872 -10.12935 -10.10670 -9.73219 -9.58466 -8.57155 -8.41283 -7.56506 -6.02159 -4.06894 3.32949 3.37314 3.39595 3.51324 3.82515 4.04327 4.46261 4.75401 4.91136 4.98473 5.09933 5.30628 5.33899 5.38173 5.54873 5.62377 5.67043 5.74610 5.86800 5.88597 5.93893 6.03751 6.08720 6.13350 6.15716 6.24757 6.33434 6.43146 6.52031 6.84903 6.93612 7.10739 7.48134 7.60729 7.94610 8.26381 8.49212 8.93429 9.18562 9.58307 11.05796 Molecular weight = 239.16amu Principal moments of inertia in cm(-1) A = 0.037817 B = 0.005685 C = 0.005440 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 740.235780 B = 4923.938857 C = 5145.739988 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.084 3.916 2 N -0.605 5.605 3 C 0.245 3.755 4 C -0.525 4.525 5 H 0.056 0.944 6 C 0.061 3.939 7 N -0.896 5.896 8 Si 0.897 3.103 9 H -0.277 1.277 10 H -0.286 1.286 11 H -0.276 1.276 12 C 0.505 3.495 13 O -0.534 6.534 14 C -0.128 4.128 15 C -0.013 4.013 16 C -0.150 4.150 17 C -0.155 4.155 18 C -0.140 4.140 19 C -0.187 4.187 20 C -0.179 4.179 21 H 0.043 0.957 22 H 0.072 0.928 23 H 0.057 0.943 24 H 0.030 0.970 25 H 0.044 0.956 26 H 0.263 0.737 27 H 0.083 0.917 28 H 0.084 0.916 29 H 0.091 0.909 30 H 0.045 0.955 31 H 0.043 0.957 32 H 0.046 0.954 33 H 0.046 0.954 34 H 0.090 0.910 35 H 0.100 0.900 36 H 0.101 0.899 37 H 0.087 0.913 38 H 0.088 0.912 39 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.568 -15.149 2.503 16.701 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.061 4.061 2 N -0.337 5.337 3 C 0.126 3.874 4 C -0.564 4.564 5 H 0.074 0.926 6 C -0.141 4.141 7 N -0.535 5.535 8 Si 0.725 3.275 9 H -0.203 1.203 10 H -0.212 1.212 11 H -0.202 1.202 12 C 0.293 3.707 13 O -0.413 6.413 14 C -0.169 4.169 15 C -0.014 4.014 16 C -0.207 4.207 17 C -0.211 4.211 18 C -0.158 4.158 19 C -0.224 4.224 20 C -0.216 4.216 21 H 0.061 0.939 22 H 0.091 0.909 23 H 0.075 0.925 24 H 0.048 0.952 25 H 0.062 0.938 26 H 0.073 0.927 27 H 0.101 0.899 28 H 0.102 0.898 29 H 0.110 0.890 30 H 0.064 0.936 31 H 0.062 0.938 32 H 0.065 0.935 33 H 0.065 0.935 34 H 0.108 0.892 35 H 0.118 0.882 36 H 0.119 0.881 37 H 0.105 0.895 38 H 0.106 0.894 39 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges -5.836 -14.938 2.551 16.239 hybrid contribution -0.103 0.333 -1.034 1.091 sum -5.939 -14.604 1.517 15.839 Atomic orbital electron populations 1.21622 0.81653 1.02477 1.00297 1.48194 1.06075 1.07983 1.71409 1.19259 0.92538 0.78240 0.97382 1.21400 1.36437 1.06236 0.92324 0.92590 1.24933 0.95391 0.96405 0.97351 1.69923 1.38402 1.14381 1.30761 0.86571 0.78335 0.77819 0.84766 1.20298 1.21187 1.20188 1.20322 0.88168 0.85058 0.77188 1.90523 1.13943 1.86790 1.50014 1.21746 0.98777 0.93174 1.03159 1.19732 0.94073 0.90498 0.97065 1.22077 0.99324 1.03891 0.95404 1.22214 0.99373 1.03913 0.95641 1.22397 1.00501 0.91587 1.01344 1.23143 1.02725 1.03916 0.92585 1.22902 0.99111 0.98055 1.01529 0.93876 0.90918 0.92473 0.95223 0.93836 0.92700 0.89852 0.89766 0.89032 0.93576 0.93820 0.93521 0.93532 0.89163 0.88233 0.88114 0.89490 0.89363 0.88820 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 1.34 10.25 59.85 0.61 1.95 16 2 N -0.60 -12.85 2.86 -182.95 -0.52 -13.38 16 3 C 0.25 6.45 5.16 -5.20 -0.03 6.42 16 4 C -0.53 -14.96 9.39 -34.44 -0.32 -15.29 16 5 H 0.06 1.59 7.81 -52.48 -0.41 1.18 16 6 C 0.06 1.76 5.46 -17.82 -0.10 1.66 16 7 N -0.90 -26.77 13.29 55.43 0.74 -26.03 16 8 Si 0.90 21.98 29.54 -169.99 -5.02 16.95 16 9 H -0.28 -6.59 7.11 56.52 0.40 -6.19 16 10 H -0.29 -6.89 7.11 56.52 0.40 -6.49 16 11 H -0.28 -6.80 7.11 56.52 0.40 -6.40 16 12 C 0.51 10.28 7.09 -10.98 -0.08 10.20 16 13 O -0.53 -12.71 10.93 5.55 0.06 -12.65 16 14 C -0.13 -1.92 3.30 -27.88 -0.09 -2.02 16 15 C -0.01 -0.19 0.62 -154.51 -0.10 -0.28 16 16 C -0.15 -2.36 8.02 37.16 0.30 -2.06 16 17 C -0.15 -2.29 6.77 37.16 0.25 -2.04 16 18 C -0.14 -1.63 5.15 -90.62 -0.47 -2.09 16 19 C -0.19 -1.94 9.57 -26.69 -0.26 -2.19 16 20 C -0.18 -1.89 9.39 -26.69 -0.25 -2.14 16 21 H 0.04 0.60 8.14 -51.93 -0.42 0.18 16 22 H 0.07 1.20 8.07 -51.93 -0.42 0.78 16 23 H 0.06 0.75 6.43 -51.93 -0.33 0.42 16 24 H 0.03 0.79 8.07 -51.93 -0.42 0.37 16 25 H 0.04 1.28 7.42 -51.93 -0.39 0.90 16 26 H 0.26 7.45 8.31 -40.82 -0.34 7.11 16 27 H 0.08 1.10 8.11 -51.93 -0.42 0.68 16 28 H 0.08 1.15 7.40 -51.93 -0.38 0.77 16 29 H 0.09 1.78 5.51 -51.93 -0.29 1.49 16 30 H 0.05 0.65 7.29 -51.93 -0.38 0.27 16 31 H 0.04 0.65 8.14 -51.92 -0.42 0.22 16 32 H 0.05 0.63 6.97 -51.93 -0.36 0.26 16 33 H 0.05 0.63 7.07 -51.93 -0.37 0.26 16 34 H 0.09 1.64 5.51 -51.93 -0.29 1.36 16 35 H 0.10 1.08 8.11 -51.93 -0.42 0.65 16 36 H 0.10 1.07 5.85 -51.93 -0.30 0.77 16 37 H 0.09 0.79 8.14 -51.93 -0.42 0.36 16 38 H 0.09 0.82 8.14 -51.93 -0.42 0.40 16 39 H 0.09 1.03 7.07 -51.93 -0.37 0.66 16 LS Contribution 305.66 15.07 4.61 4.61 Total: -1.00 -31.30 305.66 -7.03 -38.34 By element: Atomic # 1 Polarization: 6.40 SS G_CDS: -6.37 Total: 0.02 kcal Atomic # 6 Polarization: -7.34 SS G_CDS: -0.52 Total: -7.87 kcal Atomic # 7 Polarization: -39.62 SS G_CDS: 0.21 Total: -39.41 kcal Atomic # 8 Polarization: -12.71 SS G_CDS: 0.06 Total: -12.65 kcal Atomic # 14 Polarization: 21.98 SS G_CDS: -5.02 Total: 16.95 kcal Total LS contribution 4.61 Total: 4.61 kcal Total: -31.30 -7.03 -38.34 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000339125524.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 19.625 kcal (2) G-P(sol) polarization free energy of solvation -31.303 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -11.678 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.034 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.337 kcal (6) G-S(sol) free energy of system = (1) + (5) -18.712 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds