Wall clock time and date at job start Thu Apr 9 2020 12:09:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.52991 * 109.47353 * 2 1 4 4 C 1.52999 * 109.47540 * 184.48290 * 3 2 1 5 5 C 1.50705 * 112.90562 * 306.11798 * 4 3 2 6 6 O 1.21277 * 120.00054 * 102.99271 * 5 4 3 7 7 N 1.34773 * 120.00038 * 282.99754 * 5 4 3 8 8 C 1.46494 * 120.00476 * 185.32769 * 7 5 4 9 9 C 1.53000 * 109.47719 * 180.02562 * 8 7 5 10 10 C 1.50693 * 109.47422 * 180.02562 * 9 8 7 11 11 H 1.08003 * 119.99974 * 359.97438 * 10 9 8 12 12 C 1.37876 * 120.00472 * 179.97438 * 10 9 8 13 13 N 1.31513 * 119.99487 * 0.02562 * 12 10 9 14 14 Si 1.86793 * 120.00460 * 179.97438 * 12 10 9 15 15 H 1.48501 * 109.46999 * 90.00373 * 14 12 10 16 16 H 1.48497 * 109.47546 * 210.00419 * 14 12 10 17 17 H 1.48505 * 109.47345 * 330.00258 * 14 12 10 18 18 C 1.53781 * 113.61757 * 174.86630 * 4 3 2 19 19 C 1.53781 * 87.08106 * 220.01885 * 18 4 3 20 20 C 1.53780 * 113.61312 * 77.36792 * 4 3 2 21 21 H 1.08993 * 109.46902 * 299.99611 * 1 2 3 22 22 H 1.09000 * 109.47135 * 60.00046 * 1 2 3 23 23 H 1.09007 * 109.46813 * 179.97438 * 1 2 3 24 24 H 1.09004 * 109.46905 * 239.99668 * 2 1 3 25 25 H 1.08998 * 109.46820 * 120.00387 * 2 1 3 26 26 H 1.09000 * 109.47146 * 64.47994 * 3 2 1 27 27 H 1.09005 * 109.47488 * 304.48417 * 3 2 1 28 28 H 0.97007 * 119.99760 * 5.32814 * 7 5 4 29 29 H 1.09005 * 109.46779 * 299.99810 * 8 7 5 30 30 H 1.08995 * 109.47050 * 59.99481 * 8 7 5 31 31 H 1.09005 * 109.46777 * 299.99734 * 9 8 7 32 32 H 1.08999 * 109.46911 * 59.99798 * 9 8 7 33 33 H 0.97002 * 120.00273 * 180.02562 * 13 12 10 34 34 H 1.08997 * 113.61504 * 105.46707 * 18 4 3 35 35 H 1.09001 * 113.69086 * 334.57791 * 18 4 3 36 36 H 1.09001 * 113.61588 * 139.97910 * 19 18 4 37 37 H 1.08998 * 113.61222 * 270.88560 * 19 18 4 38 38 H 1.08993 * 113.61947 * 25.43295 * 20 4 3 39 39 H 1.09002 * 113.60963 * 254.52960 * 20 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 6 3.5659 1.4439 -0.1127 5 6 4.2328 0.5973 0.9407 6 8 4.6674 -0.4978 0.6530 7 7 4.3461 1.0570 2.2025 8 6 5.0957 0.2871 3.1982 9 6 5.0700 1.0246 4.5384 10 6 5.8417 0.2329 5.5624 11 1 6.3039 -0.7030 5.2851 12 6 5.9577 0.7032 6.8532 13 7 5.3945 1.8426 7.1910 14 14 6.9137 -0.2785 8.1227 15 1 8.3373 0.1435 8.1054 16 1 6.3414 -0.0343 9.4710 17 1 6.8224 -1.7254 7.8010 18 6 4.1723 2.8507 -0.2473 19 6 5.1463 2.2471 -1.2729 20 6 4.0786 1.1723 -1.5369 21 1 -0.3633 0.5137 0.8900 22 1 -0.3633 0.5138 -0.8900 23 1 -0.3633 -1.0278 -0.0005 24 1 1.8934 -0.5139 -0.8900 25 1 1.8933 -0.5139 0.8899 26 1 1.7438 1.9325 0.9274 27 1 1.6127 1.9790 -0.8471 28 1 3.9312 1.8978 2.4514 29 1 4.6395 -0.6959 3.3160 30 1 6.1275 0.1714 2.8664 31 1 5.5259 2.0077 4.4209 32 1 4.0381 1.1399 4.8699 33 1 5.4764 2.1738 8.0990 34 1 4.6592 3.2050 0.6613 35 1 3.4878 3.5837 -0.6740 36 1 5.3351 2.8946 -2.1293 37 1 6.0606 1.8544 -0.8282 38 1 3.3675 1.4454 -2.3165 39 1 4.4899 0.1716 -1.6694 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000342624112.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 12:09:34 Heat of formation + Delta-G solvation = -52.538117 kcal Electronic energy + Delta-G solvation = -17390.024846 eV Core-core repulsion = 14717.951276 eV Total energy + Delta-G solvation = -2672.073571 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 239.163 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -40.55999 -37.37386 -34.80630 -34.33649 -32.81337 -29.82740 -28.45571 -25.72553 -25.06369 -23.66446 -21.90424 -20.98354 -20.70481 -18.68749 -16.45670 -16.27337 -15.68340 -15.36130 -14.90263 -14.56795 -14.24234 -14.15294 -13.51600 -13.02765 -12.75579 -12.48757 -12.31668 -12.28014 -12.24349 -11.51286 -11.20370 -11.14365 -11.03524 -10.90060 -10.73085 -10.63804 -10.33014 -10.15389 -10.05165 -9.74053 -9.40535 -9.10410 -8.51966 -8.32795 -6.09270 -4.12062 3.04457 3.29452 3.35530 3.39599 3.68949 4.38689 4.41877 4.56971 4.75721 4.80192 5.05543 5.11216 5.17635 5.27821 5.34243 5.58009 5.63490 5.68143 5.72311 5.80675 5.82894 5.89983 6.03125 6.08680 6.16275 6.29198 6.30990 6.34611 6.36393 6.43963 6.74863 6.96985 7.52378 7.62174 7.89075 8.07049 8.28636 8.70997 8.94013 9.52787 11.02362 Molecular weight = 239.16amu Principal moments of inertia in cm(-1) A = 0.029795 B = 0.004990 C = 0.004693 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 939.539286 B = 5609.865843 C = 5964.350881 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.126 4.126 3 C -0.095 4.095 4 C -0.108 4.108 5 C 0.534 3.466 6 O -0.548 6.548 7 N -0.720 5.720 8 C 0.122 3.878 9 C 0.013 3.987 10 C -0.521 4.521 11 H 0.059 0.941 12 C 0.059 3.941 13 N -0.894 5.894 14 Si 0.896 3.104 15 H -0.280 1.280 16 H -0.286 1.286 17 H -0.273 1.273 18 C -0.130 4.130 19 C -0.143 4.143 20 C -0.117 4.117 21 H 0.054 0.946 22 H 0.051 0.949 23 H 0.052 0.948 24 H 0.064 0.936 25 H 0.063 0.937 26 H 0.067 0.933 27 H 0.071 0.929 28 H 0.397 0.603 29 H 0.055 0.945 30 H 0.054 0.946 31 H 0.022 0.978 32 H 0.022 0.978 33 H 0.262 0.738 34 H 0.073 0.927 35 H 0.088 0.912 36 H 0.068 0.932 37 H 0.080 0.920 38 H 0.084 0.916 39 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.973 2.735 -15.730 17.422 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.164 4.164 3 C -0.133 4.133 4 C -0.111 4.111 5 C 0.319 3.681 6 O -0.426 6.426 7 N -0.370 5.370 8 C 0.000 4.000 9 C -0.024 4.024 10 C -0.560 4.560 11 H 0.077 0.923 12 C -0.142 4.142 13 N -0.533 5.533 14 Si 0.724 3.276 15 H -0.206 1.206 16 H -0.212 1.212 17 H -0.197 1.197 18 C -0.167 4.167 19 C -0.180 4.180 20 C -0.155 4.155 21 H 0.073 0.927 22 H 0.070 0.930 23 H 0.071 0.929 24 H 0.083 0.917 25 H 0.082 0.918 26 H 0.086 0.914 27 H 0.089 0.911 28 H 0.230 0.770 29 H 0.074 0.926 30 H 0.073 0.927 31 H 0.040 0.960 32 H 0.040 0.960 33 H 0.071 0.929 34 H 0.092 0.908 35 H 0.107 0.893 36 H 0.087 0.913 37 H 0.099 0.901 38 H 0.103 0.897 39 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges -6.657 2.058 -15.754 17.226 hybrid contribution 0.307 -0.007 1.004 1.049 sum -6.350 2.051 -14.751 16.190 Atomic orbital electron populations 1.21764 0.95923 1.01546 1.01511 1.21516 0.95506 0.96557 1.02802 1.21497 0.91782 0.97544 1.02483 1.22042 0.96148 0.96831 0.96058 1.19811 0.78951 0.86362 0.83012 1.90648 1.49634 1.21074 1.81280 1.46281 1.54661 1.25930 1.10083 1.21707 0.94347 0.95181 0.88788 1.19316 0.97920 0.95982 0.89228 1.21053 1.33384 1.06981 0.94582 0.92293 1.24990 0.95653 0.95084 0.98520 1.69955 1.44177 1.19885 1.19307 0.86517 0.80017 0.80488 0.80569 1.20555 1.21156 1.19731 1.23017 0.98584 0.94826 1.00304 1.22840 0.97731 0.98253 0.99213 1.22845 0.97952 1.00533 0.94155 0.92733 0.92986 0.92853 0.91722 0.91789 0.91411 0.91084 0.76962 0.92628 0.92742 0.95987 0.95961 0.92855 0.90784 0.89335 0.91294 0.90122 0.89724 0.90173 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.50 9.91 37.16 0.37 -1.13 16 2 C -0.13 -1.53 5.51 -26.73 -0.15 -1.68 16 3 C -0.10 -1.05 4.68 -26.74 -0.13 -1.18 16 4 C -0.11 -1.37 0.82 -154.85 -0.13 -1.50 16 5 C 0.53 9.18 5.23 -10.98 -0.06 9.13 16 6 O -0.55 -11.43 16.14 5.56 0.09 -11.34 16 7 N -0.72 -12.85 5.31 -60.30 -0.32 -13.17 16 8 C 0.12 2.64 5.62 -4.05 -0.02 2.62 16 9 C 0.01 0.32 5.09 -27.89 -0.14 0.18 16 10 C -0.52 -14.55 9.11 -34.44 -0.31 -14.87 16 11 H 0.06 1.62 7.74 -52.48 -0.41 1.21 16 12 C 0.06 1.67 5.46 -17.82 -0.10 1.57 16 13 N -0.89 -26.20 13.29 55.43 0.74 -25.46 16 14 Si 0.90 21.46 29.54 -169.99 -5.02 16.44 16 15 H -0.28 -6.60 7.11 56.52 0.40 -6.19 16 16 H -0.29 -6.75 7.11 56.52 0.40 -6.35 16 17 H -0.27 -6.43 7.11 56.52 0.40 -6.03 16 18 C -0.13 -1.42 7.14 -25.92 -0.19 -1.61 16 19 C -0.14 -1.61 7.80 -25.92 -0.20 -1.82 16 20 C -0.12 -1.38 6.91 -25.92 -0.18 -1.55 16 21 H 0.05 0.54 8.14 -51.93 -0.42 0.11 16 22 H 0.05 0.45 8.14 -51.93 -0.42 0.03 16 23 H 0.05 0.52 8.14 -51.92 -0.42 0.09 16 24 H 0.06 0.79 7.95 -51.93 -0.41 0.38 16 25 H 0.06 0.94 7.43 -51.93 -0.39 0.56 16 26 H 0.07 0.74 8.14 -51.93 -0.42 0.32 16 27 H 0.07 0.65 8.05 -51.93 -0.42 0.23 16 28 H 0.40 6.28 8.21 -40.82 -0.34 5.94 16 29 H 0.06 1.26 8.14 -51.93 -0.42 0.84 16 30 H 0.05 1.22 8.14 -51.93 -0.42 0.80 16 31 H 0.02 0.57 8.14 -51.93 -0.42 0.15 16 32 H 0.02 0.58 8.14 -51.93 -0.42 0.15 16 33 H 0.26 7.24 8.31 -40.82 -0.34 6.90 16 34 H 0.07 0.87 7.70 -51.93 -0.40 0.47 16 35 H 0.09 0.78 8.10 -51.93 -0.42 0.36 16 36 H 0.07 0.64 8.14 -51.93 -0.42 0.22 16 37 H 0.08 1.05 8.14 -51.93 -0.42 0.63 16 38 H 0.08 0.80 8.04 -51.93 -0.42 0.39 16 39 H 0.08 1.10 7.42 -51.93 -0.39 0.71 16 LS Contribution 319.25 15.07 4.81 4.81 Total: -1.00 -30.78 319.25 -7.88 -38.66 By element: Atomic # 1 Polarization: 8.86 SS G_CDS: -6.94 Total: 1.92 kcal Atomic # 6 Polarization: -10.61 SS G_CDS: -1.23 Total: -11.84 kcal Atomic # 7 Polarization: -39.05 SS G_CDS: 0.42 Total: -38.63 kcal Atomic # 8 Polarization: -11.43 SS G_CDS: 0.09 Total: -11.34 kcal Atomic # 14 Polarization: 21.46 SS G_CDS: -5.02 Total: 16.44 kcal Total LS contribution 4.81 Total: 4.81 kcal Total: -30.78 -7.88 -38.66 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000342624112.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -13.882 kcal (2) G-P(sol) polarization free energy of solvation -30.777 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -44.659 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.879 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.656 kcal (6) G-S(sol) free energy of system = (1) + (5) -52.538 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds