Wall clock time and date at job start Thu Apr 9 2020 12:09:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.52991 * 109.47353 * 2 1 4 4 C 1.52999 * 109.47540 * 184.48290 * 3 2 1 5 5 C 1.50705 * 112.90562 * 306.11798 * 4 3 2 6 6 O 1.21277 * 120.00054 * 102.99271 * 5 4 3 7 7 N 1.34773 * 120.00038 * 282.99754 * 5 4 3 8 8 C 1.46494 * 120.00476 * 185.32769 * 7 5 4 9 9 C 1.53000 * 109.47719 * 180.02562 * 8 7 5 10 10 C 1.50693 * 109.47422 * 180.02562 * 9 8 7 11 11 H 1.08003 * 119.99974 * 359.97438 * 10 9 8 12 12 C 1.37876 * 120.00472 * 179.97438 * 10 9 8 13 13 N 1.31513 * 119.99487 * 0.02562 * 12 10 9 14 14 Si 1.86793 * 120.00460 * 179.97438 * 12 10 9 15 15 H 1.48501 * 109.46999 * 90.00373 * 14 12 10 16 16 H 1.48497 * 109.47546 * 210.00419 * 14 12 10 17 17 H 1.48505 * 109.47345 * 330.00258 * 14 12 10 18 18 C 1.53781 * 113.61757 * 174.86630 * 4 3 2 19 19 C 1.53781 * 87.08106 * 220.01885 * 18 4 3 20 20 C 1.53780 * 113.61312 * 77.36792 * 4 3 2 21 21 H 1.08993 * 109.46902 * 299.99611 * 1 2 3 22 22 H 1.09000 * 109.47135 * 60.00046 * 1 2 3 23 23 H 1.09007 * 109.46813 * 179.97438 * 1 2 3 24 24 H 1.09004 * 109.46905 * 239.99668 * 2 1 3 25 25 H 1.08998 * 109.46820 * 120.00387 * 2 1 3 26 26 H 1.09000 * 109.47146 * 64.47994 * 3 2 1 27 27 H 1.09005 * 109.47488 * 304.48417 * 3 2 1 28 28 H 0.97007 * 119.99760 * 5.32814 * 7 5 4 29 29 H 1.09005 * 109.46779 * 299.99810 * 8 7 5 30 30 H 1.08995 * 109.47050 * 59.99481 * 8 7 5 31 31 H 1.09005 * 109.46777 * 299.99734 * 9 8 7 32 32 H 1.08999 * 109.46911 * 59.99798 * 9 8 7 33 33 H 0.97002 * 120.00273 * 180.02562 * 13 12 10 34 34 H 1.08997 * 113.61504 * 105.46707 * 18 4 3 35 35 H 1.09001 * 113.69086 * 334.57791 * 18 4 3 36 36 H 1.09001 * 113.61588 * 139.97910 * 19 18 4 37 37 H 1.08998 * 113.61222 * 270.88560 * 19 18 4 38 38 H 1.08993 * 113.61947 * 25.43295 * 20 4 3 39 39 H 1.09002 * 113.60963 * 254.52960 * 20 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 6 3.5659 1.4439 -0.1127 5 6 4.2328 0.5973 0.9407 6 8 4.6674 -0.4978 0.6530 7 7 4.3461 1.0570 2.2025 8 6 5.0957 0.2871 3.1982 9 6 5.0700 1.0246 4.5384 10 6 5.8417 0.2329 5.5624 11 1 6.3039 -0.7030 5.2851 12 6 5.9577 0.7032 6.8532 13 7 5.3945 1.8426 7.1910 14 14 6.9137 -0.2785 8.1227 15 1 8.3373 0.1435 8.1054 16 1 6.3414 -0.0343 9.4710 17 1 6.8224 -1.7254 7.8010 18 6 4.1723 2.8507 -0.2473 19 6 5.1463 2.2471 -1.2729 20 6 4.0786 1.1723 -1.5369 21 1 -0.3633 0.5137 0.8900 22 1 -0.3633 0.5138 -0.8900 23 1 -0.3633 -1.0278 -0.0005 24 1 1.8934 -0.5139 -0.8900 25 1 1.8933 -0.5139 0.8899 26 1 1.7438 1.9325 0.9274 27 1 1.6127 1.9790 -0.8471 28 1 3.9312 1.8978 2.4514 29 1 4.6395 -0.6959 3.3160 30 1 6.1275 0.1714 2.8664 31 1 5.5259 2.0077 4.4209 32 1 4.0381 1.1399 4.8699 33 1 5.4764 2.1738 8.0990 34 1 4.6592 3.2050 0.6613 35 1 3.4878 3.5837 -0.6740 36 1 5.3351 2.8946 -2.1293 37 1 6.0606 1.8544 -0.8282 38 1 3.3675 1.4454 -2.3165 39 1 4.4899 0.1716 -1.6694 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000342624112.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 12:09:33 Heat of formation + Delta-G solvation = -71.248519 kcal Electronic energy + Delta-G solvation = -17390.836190 eV Core-core repulsion = 14717.951276 eV Total energy + Delta-G solvation = -2672.884915 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 239.163 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -41.75626 -38.67327 -36.57716 -35.23161 -34.82030 -31.67637 -29.47837 -27.07617 -26.44998 -24.88011 -23.28474 -22.56616 -21.78945 -20.02415 -18.52620 -17.45001 -16.87991 -16.84674 -16.49854 -15.92721 -15.71621 -15.47426 -14.58380 -14.48597 -14.33314 -13.99521 -13.35361 -13.27473 -13.18993 -13.16005 -12.94884 -12.55512 -12.40553 -12.26859 -12.07208 -11.82281 -11.69173 -11.63130 -11.46970 -11.09666 -10.98902 -10.63536 -10.62257 -10.02436 -8.25959 -6.36794 1.40403 1.40952 1.52477 1.65926 2.24206 2.44253 3.08654 3.43337 3.59428 3.74261 3.90185 4.02680 4.16421 4.26875 4.37943 4.44124 4.51684 4.74040 4.79734 4.80851 4.82902 4.87059 4.91891 4.98970 5.04742 5.13813 5.20077 5.25537 5.29023 5.37627 5.44770 5.47992 5.50131 5.54642 5.76296 6.13966 6.63303 6.75953 7.28533 7.32667 8.85957 Molecular weight = 239.16amu Principal moments of inertia in cm(-1) A = 0.029795 B = 0.004990 C = 0.004693 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 939.539286 B = 5609.865843 C = 5964.350881 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.127 4.127 3 C -0.091 4.091 4 C -0.110 4.110 5 C 0.531 3.469 6 O -0.590 6.590 7 N -0.717 5.717 8 C 0.142 3.858 9 C 0.025 3.975 10 C -0.549 4.549 11 H 0.057 0.943 12 C 0.009 3.991 13 N -0.926 5.926 14 Si 0.965 3.035 15 H -0.271 1.271 16 H -0.278 1.278 17 H -0.268 1.268 18 C -0.119 4.119 19 C -0.145 4.145 20 C -0.112 4.112 21 H 0.054 0.946 22 H 0.073 0.927 23 H 0.051 0.949 24 H 0.059 0.941 25 H 0.025 0.975 26 H 0.070 0.930 27 H 0.106 0.894 28 H 0.408 0.592 29 H 0.041 0.959 30 H 0.044 0.956 31 H 0.009 0.991 32 H 0.007 0.993 33 H 0.266 0.734 34 H 0.063 0.937 35 H 0.124 0.876 36 H 0.096 0.904 37 H 0.052 0.948 38 H 0.119 0.881 39 H 0.052 0.948 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.775 3.820 -16.820 18.920 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.164 4.164 3 C -0.128 4.128 4 C -0.114 4.114 5 C 0.319 3.681 6 O -0.470 6.470 7 N -0.367 5.367 8 C 0.018 3.982 9 C -0.013 4.013 10 C -0.587 4.587 11 H 0.075 0.925 12 C -0.190 4.190 13 N -0.565 5.565 14 Si 0.789 3.211 15 H -0.196 1.196 16 H -0.203 1.203 17 H -0.192 1.192 18 C -0.156 4.156 19 C -0.182 4.182 20 C -0.150 4.150 21 H 0.073 0.927 22 H 0.092 0.908 23 H 0.070 0.930 24 H 0.078 0.922 25 H 0.044 0.956 26 H 0.088 0.912 27 H 0.124 0.876 28 H 0.244 0.756 29 H 0.059 0.941 30 H 0.062 0.938 31 H 0.028 0.972 32 H 0.026 0.974 33 H 0.075 0.925 34 H 0.081 0.919 35 H 0.142 0.858 36 H 0.114 0.886 37 H 0.071 0.929 38 H 0.137 0.863 39 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -7.472 3.163 -16.858 18.709 hybrid contribution 0.550 -0.360 1.315 1.470 sum -6.922 2.802 -15.543 17.244 Atomic orbital electron populations 1.21733 0.94078 1.01879 1.02601 1.21499 0.97136 0.97094 1.00720 1.21553 0.90124 0.96976 1.04178 1.22067 0.97085 0.97365 0.94836 1.20700 0.77977 0.86248 0.83198 1.90622 1.51364 1.23188 1.81862 1.46128 1.54518 1.26074 1.09991 1.21193 0.94190 0.94507 0.88338 1.19111 0.96404 0.95338 0.90401 1.21449 1.34069 1.07384 0.95812 0.92518 1.25857 0.96479 0.96089 1.00564 1.70054 1.45148 1.21239 1.20060 0.85445 0.78739 0.79029 0.77841 1.19649 1.20344 1.19203 1.23081 0.98626 0.94036 0.99900 1.22829 0.96623 0.98522 1.00225 1.22920 0.98645 0.99302 0.94139 0.92675 0.90763 0.93027 0.92182 0.95585 0.91162 0.87553 0.75627 0.94066 0.93795 0.97247 0.97416 0.92467 0.91867 0.85757 0.88572 0.92927 0.86303 0.92912 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.64 9.91 71.98 0.71 -1.93 16 2 C -0.13 -2.96 5.51 30.59 0.17 -2.79 16 3 C -0.09 -1.77 4.68 30.59 0.14 -1.63 16 4 C -0.11 -2.65 0.82 -52.40 -0.04 -2.69 16 5 C 0.53 18.62 5.23 87.66 0.46 19.07 16 6 O -0.59 -25.61 16.14 -3.02 -0.05 -25.65 16 7 N -0.72 -26.23 5.31 -463.08 -2.46 -28.69 16 8 C 0.14 6.37 5.62 86.38 0.49 6.85 16 9 C 0.02 1.28 5.09 29.85 0.15 1.44 16 10 C -0.55 -31.23 9.11 25.60 0.23 -31.00 16 11 H 0.06 3.17 7.74 -2.91 -0.02 3.15 16 12 C 0.01 0.51 5.46 84.65 0.46 0.97 16 13 N -0.93 -54.59 13.29 21.45 0.28 -54.30 16 14 Si 0.97 44.00 29.54 68.60 2.03 46.03 16 15 H -0.27 -11.95 7.11 99.48 0.71 -11.24 16 16 H -0.28 -12.27 7.11 99.48 0.71 -11.56 16 17 H -0.27 -11.89 7.11 99.48 0.71 -11.19 16 18 C -0.12 -2.28 7.14 31.12 0.22 -2.06 16 19 C -0.14 -2.98 7.80 31.12 0.24 -2.74 16 20 C -0.11 -2.42 6.91 31.12 0.22 -2.20 16 21 H 0.05 0.99 8.14 -2.39 -0.02 0.97 16 22 H 0.07 1.03 8.14 -2.39 -0.02 1.01 16 23 H 0.05 0.94 8.14 -2.38 -0.02 0.92 16 24 H 0.06 1.43 7.95 -2.38 -0.02 1.41 16 25 H 0.03 0.78 7.43 -2.39 -0.02 0.76 16 26 H 0.07 1.36 8.14 -2.39 -0.02 1.34 16 27 H 0.11 1.41 8.05 -2.38 -0.02 1.39 16 28 H 0.41 13.02 8.21 -92.70 -0.76 12.26 16 29 H 0.04 1.96 8.14 -2.38 -0.02 1.94 16 30 H 0.04 2.05 8.14 -2.39 -0.02 2.03 16 31 H 0.01 0.49 8.14 -2.38 -0.02 0.47 16 32 H 0.01 0.41 8.14 -2.39 -0.02 0.39 16 33 H 0.27 14.72 8.31 -92.71 -0.77 13.95 16 34 H 0.06 1.37 7.70 -2.39 -0.02 1.35 16 35 H 0.12 1.57 8.10 -2.39 -0.02 1.55 16 36 H 0.10 1.47 8.14 -2.39 -0.02 1.45 16 37 H 0.05 1.37 8.14 -2.39 -0.02 1.35 16 38 H 0.12 1.76 8.04 -2.39 -0.02 1.74 16 39 H 0.05 1.44 7.42 -2.39 -0.02 1.42 16 Total: -1.00 -67.94 319.25 3.50 -64.44 By element: Atomic # 1 Polarization: 16.63 SS G_CDS: 0.24 Total: 16.87 kcal Atomic # 6 Polarization: -22.15 SS G_CDS: 3.45 Total: -18.70 kcal Atomic # 7 Polarization: -80.81 SS G_CDS: -2.17 Total: -82.99 kcal Atomic # 8 Polarization: -25.61 SS G_CDS: -0.05 Total: -25.65 kcal Atomic # 14 Polarization: 44.00 SS G_CDS: 2.03 Total: 46.03 kcal Total: -67.94 3.50 -64.44 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000342624112.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -6.807 kcal (2) G-P(sol) polarization free energy of solvation -67.940 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -74.747 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.498 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.442 kcal (6) G-S(sol) free energy of system = (1) + (5) -71.249 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds