Wall clock time and date at job start Thu Apr 9 2020 12:09:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 C 1.53003 * 109.47043 * 2 1 4 4 C 1.53007 * 109.47114 * 185.34543 * 3 2 1 5 5 C 1.50701 * 112.90663 * 314.44141 * 4 3 2 6 6 O 1.21282 * 120.00255 * 111.67789 * 5 4 3 7 7 N 1.34780 * 119.99849 * 291.67888 * 5 4 3 8 8 C 1.46499 * 119.99910 * 4.05459 * 7 5 4 9 9 C 1.46499 * 120.00036 * 184.05760 * 7 5 4 10 10 C 1.50700 * 109.47164 * 89.99346 * 9 7 5 11 11 H 1.07999 * 119.99802 * 0.02562 * 10 9 7 12 12 C 1.37875 * 120.00018 * 179.97438 * 10 9 7 13 13 N 1.31513 * 120.00350 * 0.02562 * 12 10 9 14 14 Si 1.86806 * 119.99997 * 180.02562 * 12 10 9 15 15 H 1.48499 * 109.46895 * 60.00597 * 14 12 10 16 16 H 1.48499 * 109.46861 * 180.02562 * 14 12 10 17 17 H 1.48501 * 109.47217 * 300.00432 * 14 12 10 18 18 C 1.53777 * 113.61371 * 183.18862 * 4 3 2 19 19 C 1.53781 * 87.07755 * 220.01771 * 18 4 3 20 20 C 1.53777 * 87.08393 * 25.43310 * 19 18 4 21 21 H 1.09002 * 109.47287 * 59.99580 * 1 2 3 22 22 H 1.08997 * 109.47174 * 179.97438 * 1 2 3 23 23 H 1.09005 * 109.47488 * 299.99704 * 1 2 3 24 24 H 1.09000 * 109.46833 * 240.00529 * 2 1 3 25 25 H 1.09002 * 109.47287 * 120.00420 * 2 1 3 26 26 H 1.09000 * 109.47202 * 65.34823 * 3 2 1 27 27 H 1.08991 * 109.47274 * 305.34640 * 3 2 1 28 28 H 1.08993 * 109.47413 * 84.61846 * 8 7 5 29 29 H 1.09003 * 109.47091 * 204.61769 * 8 7 5 30 30 H 1.08996 * 109.47368 * 324.61471 * 8 7 5 31 31 H 1.08996 * 109.47248 * 209.99736 * 9 7 5 32 32 H 1.09002 * 109.47177 * 329.99990 * 9 7 5 33 33 H 0.96999 * 120.00686 * 179.97438 * 13 12 10 34 34 H 1.09003 * 113.61227 * 105.47175 * 18 4 3 35 35 H 1.08997 * 113.61676 * 334.56577 * 18 4 3 36 36 H 1.09003 * 113.61209 * 139.98346 * 19 18 4 37 37 H 1.08999 * 113.61370 * 270.87910 * 19 18 4 38 38 H 1.08999 * 113.61403 * 89.11018 * 20 19 18 39 39 H 1.09001 * 113.61717 * 219.93460 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 3.5641 1.4446 -0.1344 5 6 4.2341 0.4432 0.7707 6 8 4.7895 -0.5256 0.2974 7 7 4.2162 0.6241 2.1062 8 6 3.4705 1.7452 2.6835 9 6 4.9425 -0.3002 2.9804 10 6 6.3487 0.2017 3.1846 11 1 6.6692 1.1178 2.7109 12 6 7.2258 -0.5081 3.9770 13 7 6.8354 -1.6234 4.5543 14 14 8.9687 0.1144 4.2307 15 1 8.9273 1.4600 4.8577 16 1 9.7049 -0.8226 5.1168 17 1 9.6594 0.2006 2.9190 18 6 4.1865 2.8492 -0.0668 19 6 5.1388 2.3952 -1.1856 20 6 4.0541 1.3832 -1.5907 21 1 -0.3634 0.5139 -0.8900 22 1 -0.3633 -1.0276 -0.0005 23 1 -0.3634 0.5138 0.8900 24 1 1.8932 -0.5138 -0.8900 25 1 1.8933 -0.5139 0.8900 26 1 1.7569 1.9280 0.9340 27 1 1.6005 1.9832 -0.8382 28 1 2.4255 1.4612 2.8071 29 1 3.8944 2.0020 3.6543 30 1 3.5368 2.6064 2.0188 31 1 4.4358 -0.3634 3.9434 32 1 4.9726 -1.2878 2.5201 33 1 7.4525 -2.1230 5.1115 34 1 4.6900 3.0586 0.8770 35 1 3.5047 3.6440 -0.3694 36 1 5.3244 3.1612 -1.9386 37 1 6.0540 1.9309 -0.8183 38 1 3.3361 1.7772 -2.3099 39 1 4.4509 0.4097 -1.8786 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000345549495.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 12:09:39 Heat of formation + Delta-G solvation = -49.835092 kcal Electronic energy + Delta-G solvation = -18268.763816 eV Core-core repulsion = 15596.807457 eV Total energy + Delta-G solvation = -2671.956359 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 239.163 amu Computer time = 1.29 seconds Orbital eigenvalues (eV) -41.84060 -38.49612 -36.63487 -35.25561 -34.67053 -30.37640 -29.06670 -27.51571 -26.57347 -25.58867 -24.21583 -22.31924 -21.43821 -19.25556 -18.70759 -17.32375 -17.08288 -16.61070 -16.48551 -15.93261 -15.42994 -15.25054 -14.42685 -14.29988 -13.97450 -13.64163 -13.48538 -13.33652 -13.22157 -13.12908 -13.01323 -12.79596 -12.52358 -12.31371 -12.21944 -12.02895 -11.77882 -11.76286 -11.56341 -11.01239 -10.93950 -10.67531 -10.40926 -9.40215 -8.25049 -6.41058 1.33442 1.38235 1.45663 1.86990 2.30392 2.45281 3.03689 3.50359 3.58025 3.70105 3.91023 4.04516 4.17927 4.27652 4.42407 4.44248 4.66802 4.76051 4.79630 4.83675 4.85959 4.93137 4.94679 4.95676 5.02533 5.04682 5.16496 5.19380 5.25361 5.29622 5.39787 5.47648 5.53766 5.55300 5.84346 6.03243 6.66937 6.81686 7.25500 7.51468 8.81851 Molecular weight = 239.16amu Principal moments of inertia in cm(-1) A = 0.028038 B = 0.007379 C = 0.006576 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 998.403560 B = 3793.594312 C = 4256.898924 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.129 4.129 3 C -0.091 4.091 4 C -0.108 4.108 5 C 0.526 3.474 6 O -0.604 6.604 7 N -0.606 5.606 8 C 0.071 3.929 9 C 0.260 3.740 10 C -0.544 4.544 11 H 0.053 0.947 12 C 0.007 3.993 13 N -0.929 5.929 14 Si 0.969 3.031 15 H -0.258 1.258 16 H -0.276 1.276 17 H -0.278 1.278 18 C -0.117 4.117 19 C -0.146 4.146 20 C -0.115 4.115 21 H 0.074 0.926 22 H 0.047 0.953 23 H 0.062 0.938 24 H 0.047 0.953 25 H 0.023 0.977 26 H 0.084 0.916 27 H 0.107 0.893 28 H 0.067 0.933 29 H 0.065 0.935 30 H 0.099 0.901 31 H 0.021 0.979 32 H -0.007 1.007 33 H 0.268 0.732 34 H 0.063 0.937 35 H 0.135 0.865 36 H 0.099 0.901 37 H 0.039 0.961 38 H 0.124 0.876 39 H 0.043 0.957 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.805 12.503 -9.096 19.453 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.167 4.167 3 C -0.128 4.128 4 C -0.111 4.111 5 C 0.315 3.685 6 O -0.486 6.486 7 N -0.336 5.336 8 C -0.071 4.071 9 C 0.139 3.861 10 C -0.583 4.583 11 H 0.071 0.929 12 C -0.192 4.192 13 N -0.569 5.569 14 Si 0.792 3.208 15 H -0.182 1.182 16 H -0.201 1.201 17 H -0.204 1.204 18 C -0.154 4.154 19 C -0.183 4.183 20 C -0.153 4.153 21 H 0.093 0.907 22 H 0.066 0.934 23 H 0.082 0.918 24 H 0.065 0.935 25 H 0.042 0.958 26 H 0.102 0.898 27 H 0.125 0.875 28 H 0.086 0.914 29 H 0.084 0.916 30 H 0.117 0.883 31 H 0.039 0.961 32 H 0.011 0.989 33 H 0.077 0.923 34 H 0.081 0.919 35 H 0.153 0.847 36 H 0.118 0.882 37 H 0.058 0.942 38 H 0.142 0.858 39 H 0.062 0.938 Dipole moment (debyes) X Y Z Total from point charges -11.478 11.863 -9.167 18.881 hybrid contribution 1.355 -0.793 0.620 1.688 sum -10.123 11.070 -8.547 17.264 Atomic orbital electron populations 1.21698 0.93378 1.01782 1.02938 1.21519 0.97650 0.97463 1.00094 1.21655 0.89744 0.96687 1.04721 1.22029 0.97385 0.95577 0.96094 1.20680 0.78964 0.86141 0.82690 1.90596 1.48142 1.33903 1.75975 1.48043 1.49779 1.29597 1.06181 1.22184 0.95661 0.89127 1.00160 1.18719 0.90931 0.88364 0.88116 1.21667 0.97862 1.09011 1.29759 0.92899 1.25902 1.03387 0.94868 0.95067 1.70051 1.37741 1.16417 1.32663 0.85455 0.78412 0.78866 0.78019 1.18192 1.20137 1.20380 1.23164 0.98643 0.94580 0.99029 1.22789 0.96500 0.99435 0.99592 1.22936 0.98752 0.99365 0.94241 0.90700 0.93384 0.91849 0.93462 0.95840 0.89750 0.87489 0.91411 0.91647 0.88312 0.96144 0.98935 0.92331 0.91862 0.84718 0.88240 0.94210 0.85779 0.93787 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.74 9.91 71.98 0.71 -2.03 16 2 C -0.13 -3.50 5.36 30.59 0.16 -3.33 16 3 C -0.09 -2.00 4.42 30.60 0.14 -1.87 16 4 C -0.11 -3.18 0.39 -52.40 -0.02 -3.20 16 5 C 0.53 23.18 4.84 87.66 0.42 23.60 16 6 O -0.60 -33.58 15.54 -3.04 -0.05 -33.63 16 7 N -0.61 -27.16 2.86 -851.14 -2.43 -29.59 16 8 C 0.07 2.25 8.84 127.77 1.13 3.38 16 9 C 0.26 14.79 5.17 85.63 0.44 15.23 16 10 C -0.54 -32.53 9.39 25.60 0.24 -32.29 16 11 H 0.05 3.11 7.81 -2.91 -0.02 3.09 16 12 C 0.01 0.40 5.46 84.65 0.46 0.86 16 13 N -0.93 -57.84 13.29 21.45 0.28 -57.55 16 14 Si 0.97 45.89 29.54 68.60 2.03 47.91 16 15 H -0.26 -11.36 7.11 99.48 0.71 -10.65 16 16 H -0.28 -12.59 7.11 99.48 0.71 -11.88 16 17 H -0.28 -13.19 7.11 99.48 0.71 -12.48 16 18 C -0.12 -2.76 5.94 31.12 0.18 -2.58 16 19 C -0.15 -3.94 7.80 31.12 0.24 -3.69 16 20 C -0.12 -3.17 7.10 31.12 0.22 -2.95 16 21 H 0.07 1.13 8.14 -2.39 -0.02 1.11 16 22 H 0.05 0.96 8.14 -2.39 -0.02 0.95 16 23 H 0.06 1.11 8.14 -2.38 -0.02 1.09 16 24 H 0.05 1.40 8.14 -2.39 -0.02 1.38 16 25 H 0.02 0.80 7.34 -2.39 -0.02 0.79 16 26 H 0.08 1.63 6.02 -2.39 -0.01 1.61 16 27 H 0.11 1.61 7.88 -2.39 -0.02 1.59 16 28 H 0.07 1.82 7.40 -2.39 -0.02 1.80 16 29 H 0.06 2.17 8.03 -2.39 -0.02 2.15 16 30 H 0.10 2.50 4.15 -2.39 -0.01 2.49 16 31 H 0.02 1.18 8.07 -2.39 -0.02 1.16 16 32 H -0.01 -0.49 7.37 -2.39 -0.02 -0.51 16 33 H 0.27 15.59 8.31 -92.71 -0.77 14.82 16 34 H 0.06 1.71 6.40 -2.39 -0.02 1.70 16 35 H 0.13 1.95 8.10 -2.39 -0.02 1.93 16 36 H 0.10 1.99 8.14 -2.39 -0.02 1.97 16 37 H 0.04 1.41 8.14 -2.39 -0.02 1.39 16 38 H 0.12 2.34 7.92 -2.39 -0.02 2.32 16 39 H 0.04 1.53 7.36 -2.39 -0.02 1.51 16 Total: -1.00 -77.56 308.14 5.18 -72.39 By element: Atomic # 1 Polarization: 8.33 SS G_CDS: 1.01 Total: 9.33 kcal Atomic # 6 Polarization: -13.20 SS G_CDS: 4.34 Total: -8.86 kcal Atomic # 7 Polarization: -85.00 SS G_CDS: -2.15 Total: -87.14 kcal Atomic # 8 Polarization: -33.58 SS G_CDS: -0.05 Total: -33.63 kcal Atomic # 14 Polarization: 45.89 SS G_CDS: 2.03 Total: 47.91 kcal Total: -77.56 5.18 -72.39 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000345549495.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 22.551 kcal (2) G-P(sol) polarization free energy of solvation -77.563 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -55.013 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.178 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.386 kcal (6) G-S(sol) free energy of system = (1) + (5) -49.835 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.29 seconds