Wall clock time and date at job start Thu Apr 9 2020 12:09:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53000 * 109.47178 * 2 1 4 4 C 1.53003 * 109.47285 * 240.00069 * 2 1 3 5 5 C 1.50700 * 109.47122 * 59.99932 * 4 2 1 6 6 H 1.08001 * 119.99953 * 0.02562 * 5 4 2 7 7 C 1.37875 * 120.00162 * 179.97438 * 5 4 2 8 8 N 1.31513 * 119.99752 * 0.02562 * 7 5 4 9 9 Si 1.86798 * 120.00128 * 180.02562 * 7 5 4 10 10 H 1.48498 * 109.47427 * 359.97438 * 9 7 5 11 11 H 1.48499 * 109.46948 * 120.00472 * 9 7 5 12 12 H 1.48508 * 109.46940 * 239.99943 * 9 7 5 13 13 C 1.53000 * 109.46904 * 119.99964 * 2 1 3 14 14 N 1.46499 * 109.46981 * 300.00244 * 13 2 1 15 15 C 1.34777 * 119.99553 * 180.02562 * 14 13 2 16 16 O 1.21278 * 120.00088 * 359.97438 * 15 14 13 17 17 C 1.50703 * 119.99745 * 179.97438 * 15 14 13 18 18 C 1.53781 * 113.61417 * 179.97438 * 17 15 14 19 19 C 1.53786 * 87.17350 * 139.93966 * 18 17 15 20 20 C 1.53782 * 113.61283 * 277.49692 * 17 15 14 21 21 H 1.08994 * 109.47399 * 300.00587 * 1 2 3 22 22 H 1.09009 * 109.47172 * 59.99979 * 1 2 3 23 23 H 1.08997 * 109.47090 * 179.97438 * 1 2 3 24 24 H 1.08994 * 109.47199 * 179.97438 * 3 2 1 25 25 H 1.08996 * 109.47287 * 299.99866 * 3 2 1 26 26 H 1.09005 * 109.47075 * 59.99639 * 3 2 1 27 27 H 1.08994 * 109.47163 * 180.02562 * 4 2 1 28 28 H 1.09004 * 109.47011 * 300.00329 * 4 2 1 29 29 H 0.97001 * 120.00287 * 180.02562 * 8 7 5 30 30 H 1.08994 * 109.47005 * 180.02562 * 13 2 1 31 31 H 1.09004 * 109.46932 * 59.99953 * 13 2 1 32 32 H 0.96993 * 120.00243 * 359.97438 * 14 13 2 33 33 H 1.08996 * 112.85169 * 48.79875 * 17 15 14 34 34 H 1.09002 * 113.61445 * 254.52965 * 18 17 15 35 35 H 1.09002 * 113.61408 * 25.34696 * 18 17 15 36 36 H 1.08993 * 113.61491 * 89.15923 * 19 18 17 37 37 H 1.09000 * 113.61138 * 220.06261 * 19 18 17 38 38 H 1.08997 * 113.61668 * 334.56418 * 20 17 15 39 39 H 1.08998 * 113.61674 * 105.38927 * 20 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0401 -0.7212 -1.2493 5 6 1.5377 -0.0108 -2.4797 6 1 0.9171 0.8675 -2.3806 7 6 1.8713 -0.4815 -3.7320 8 7 2.6274 -1.5508 -3.8526 9 14 1.2492 0.3995 -5.2572 10 1 0.4236 1.5657 -4.8531 11 1 2.4045 0.8662 -6.0650 12 1 0.4245 -0.5338 -6.0661 13 6 2.0400 -0.7213 1.2493 14 7 1.5515 -0.0306 2.4454 15 6 1.8775 -0.4909 3.6695 16 8 2.5748 -1.4769 3.7807 17 6 1.3756 0.2199 4.8999 18 6 1.8344 -0.4292 6.2164 19 6 2.0385 0.9953 6.7590 20 6 2.2244 1.4395 5.2962 21 1 -0.3634 0.5139 0.8899 22 1 -0.3634 0.5139 -0.8901 23 1 -0.3633 -1.0276 -0.0005 24 1 3.1300 1.4425 0.0005 25 1 1.6767 1.9563 -0.8900 26 1 1.6766 1.9564 0.8900 27 1 3.1300 -0.7216 -1.2490 28 1 1.6767 -1.7489 -1.2493 29 1 2.8624 -1.8818 -4.7336 30 1 3.1299 -0.7209 1.2495 31 1 1.6766 -1.7489 1.2492 32 1 0.9942 0.7582 2.3564 33 1 0.3056 0.4242 4.8639 34 1 1.0469 -0.9826 6.7281 35 1 2.7597 -0.9978 6.1237 36 1 1.1503 1.4136 7.2325 37 1 2.9359 1.1062 7.3676 38 1 3.2571 1.3831 4.9521 39 1 1.7524 2.3941 5.0639 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000345918053.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 12:09:46 Heat of formation + Delta-G solvation = -45.981834 kcal Electronic energy + Delta-G solvation = -17361.067147 eV Core-core repulsion = 14689.277878 eV Total energy + Delta-G solvation = -2671.789269 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 239.163 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -40.16246 -37.93060 -36.65889 -33.55277 -32.06491 -27.76125 -26.95232 -26.51444 -25.78337 -25.31854 -22.83697 -20.68601 -19.48330 -18.30741 -17.09926 -16.34282 -15.70457 -15.49868 -14.79826 -14.50591 -14.15693 -13.58481 -13.22643 -12.84514 -12.73880 -12.58531 -12.31476 -12.07755 -11.95277 -11.29613 -11.14301 -11.02657 -10.83775 -10.69776 -10.64801 -10.54970 -10.40035 -10.24062 -9.87914 -9.61789 -9.12841 -8.90889 -8.68226 -8.36582 -6.00339 -4.01659 2.83850 3.29742 3.37771 3.39985 3.51497 4.38261 4.44824 4.47986 4.64240 4.66731 5.16790 5.35249 5.39182 5.49673 5.55110 5.62981 5.63674 5.69241 5.75441 5.81001 5.95291 6.17283 6.22703 6.26776 6.30958 6.39835 6.59007 6.62723 6.79234 7.06312 7.07168 7.13169 7.64099 7.76226 7.80883 7.98594 8.40030 8.49722 9.03438 9.61581 11.11198 Molecular weight = 239.16amu Principal moments of inertia in cm(-1) A = 0.056981 B = 0.004480 C = 0.004340 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 491.270948 B = 6248.884287 C = 6449.394256 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 C -0.073 4.073 3 C -0.127 4.127 4 C 0.035 3.965 5 C -0.511 4.511 6 H 0.060 0.940 7 C 0.056 3.944 8 N -0.894 5.894 9 Si 0.889 3.111 10 H -0.273 1.273 11 H -0.285 1.285 12 H -0.285 1.285 13 C 0.127 3.873 14 N -0.720 5.720 15 C 0.515 3.485 16 O -0.547 6.547 17 C -0.140 4.140 18 C -0.118 4.118 19 C -0.142 4.142 20 C -0.123 4.123 21 H 0.029 0.971 22 H 0.067 0.933 23 H 0.047 0.953 24 H 0.047 0.953 25 H 0.067 0.933 26 H 0.029 0.971 27 H 0.018 0.982 28 H 0.018 0.982 29 H 0.259 0.741 30 H 0.062 0.938 31 H 0.062 0.938 32 H 0.398 0.602 33 H 0.109 0.891 34 H 0.069 0.931 35 H 0.094 0.906 36 H 0.081 0.919 37 H 0.070 0.930 38 H 0.085 0.915 39 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.706 6.796 16.879 18.569 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C -0.073 4.073 3 C -0.184 4.184 4 C -0.002 4.002 5 C -0.549 4.549 6 H 0.078 0.922 7 C -0.145 4.145 8 N -0.534 5.534 9 Si 0.717 3.283 10 H -0.198 1.198 11 H -0.211 1.211 12 H -0.211 1.211 13 C 0.004 3.996 14 N -0.371 5.371 15 C 0.300 3.700 16 O -0.425 6.425 17 C -0.161 4.161 18 C -0.155 4.155 19 C -0.180 4.180 20 C -0.161 4.161 21 H 0.048 0.952 22 H 0.086 0.914 23 H 0.066 0.934 24 H 0.066 0.934 25 H 0.086 0.914 26 H 0.048 0.952 27 H 0.036 0.964 28 H 0.036 0.964 29 H 0.069 0.931 30 H 0.080 0.920 31 H 0.081 0.919 32 H 0.233 0.767 33 H 0.128 0.872 34 H 0.088 0.912 35 H 0.113 0.887 36 H 0.100 0.900 37 H 0.089 0.911 38 H 0.103 0.897 39 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges -3.122 5.965 16.802 18.101 hybrid contribution -0.602 0.739 -1.127 1.476 sum -3.724 6.705 15.675 17.451 Atomic orbital electron populations 1.21760 0.95306 1.01143 1.00213 1.20901 0.95453 0.95848 0.95099 1.21757 1.00511 0.95911 1.00217 1.19098 0.96352 0.95235 0.89527 1.21224 1.31104 1.12042 0.90518 0.92201 1.25017 0.95320 0.95083 0.99102 1.69976 1.37002 1.23082 1.23333 0.86594 0.78606 0.79680 0.83448 1.19797 1.21123 1.21129 1.21620 0.98844 0.96018 0.83126 1.46234 1.53115 1.31842 1.05928 1.20468 0.80458 0.84432 0.84600 1.90673 1.38451 1.26519 1.86887 1.22790 1.01288 0.98440 0.93616 1.22785 1.02682 0.96365 0.93715 1.22871 1.02104 0.96866 0.96142 1.22847 1.00381 0.96524 0.96376 0.95248 0.91442 0.93385 0.93402 0.91446 0.95235 0.96359 0.96359 0.93091 0.91954 0.91917 0.76710 0.87245 0.91226 0.88722 0.90033 0.91097 0.89657 0.90753 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.23 8.05 37.16 0.30 -1.93 16 2 C -0.07 -1.39 0.54 -154.51 -0.08 -1.47 16 3 C -0.13 -2.22 8.05 37.16 0.30 -1.92 16 4 C 0.04 0.87 4.04 -27.88 -0.11 0.76 16 5 C -0.51 -13.58 7.65 -34.44 -0.26 -13.84 16 6 H 0.06 1.53 5.68 -52.49 -0.30 1.23 16 7 C 0.06 1.55 5.46 -17.82 -0.10 1.46 16 8 N -0.89 -26.49 13.29 55.43 0.74 -25.76 16 9 Si 0.89 21.19 29.54 -169.99 -5.02 16.17 16 10 H -0.27 -6.33 7.11 56.52 0.40 -5.92 16 11 H -0.29 -6.79 7.11 56.52 0.40 -6.39 16 12 H -0.29 -6.80 7.11 56.52 0.40 -6.39 16 13 C 0.13 2.29 4.56 -4.04 -0.02 2.27 16 14 N -0.72 -10.59 4.96 -60.29 -0.30 -10.89 16 15 C 0.51 7.76 7.35 -10.98 -0.08 7.68 16 16 O -0.55 -10.52 15.90 5.56 0.09 -10.43 16 17 C -0.14 -1.50 4.15 -90.96 -0.38 -1.88 16 18 C -0.12 -1.20 7.40 -25.92 -0.19 -1.40 16 19 C -0.14 -1.14 8.10 -25.80 -0.21 -1.35 16 20 C -0.12 -1.13 7.64 -25.80 -0.20 -1.32 16 21 H 0.03 0.42 6.86 -51.93 -0.36 0.06 16 22 H 0.07 1.27 6.62 -51.92 -0.34 0.93 16 23 H 0.05 0.87 8.14 -51.93 -0.42 0.44 16 24 H 0.05 0.86 8.14 -51.93 -0.42 0.44 16 25 H 0.07 1.27 6.62 -51.93 -0.34 0.93 16 26 H 0.03 0.42 6.86 -51.93 -0.36 0.06 16 27 H 0.02 0.49 8.14 -51.93 -0.42 0.06 16 28 H 0.02 0.49 8.14 -51.93 -0.42 0.06 16 29 H 0.26 7.28 8.31 -40.82 -0.34 6.94 16 30 H 0.06 1.20 8.14 -51.93 -0.42 0.78 16 31 H 0.06 1.21 8.14 -51.93 -0.42 0.79 16 32 H 0.40 4.93 6.16 -40.82 -0.25 4.68 16 33 H 0.11 0.96 8.14 -51.93 -0.42 0.54 16 34 H 0.07 0.64 8.14 -51.93 -0.42 0.22 16 35 H 0.09 1.15 7.43 -51.93 -0.39 0.77 16 36 H 0.08 0.54 8.14 -51.93 -0.42 0.12 16 37 H 0.07 0.53 8.14 -51.93 -0.42 0.11 16 38 H 0.08 0.88 8.09 -51.93 -0.42 0.46 16 39 H 0.07 0.57 8.14 -51.93 -0.42 0.14 16 LS Contribution 310.18 15.07 4.67 4.67 Total: -1.00 -30.74 310.18 -7.39 -38.14 By element: Atomic # 1 Polarization: 7.60 SS G_CDS: -6.54 Total: 1.05 kcal Atomic # 6 Polarization: -11.93 SS G_CDS: -1.03 Total: -12.96 kcal Atomic # 7 Polarization: -37.08 SS G_CDS: 0.44 Total: -36.64 kcal Atomic # 8 Polarization: -10.52 SS G_CDS: 0.09 Total: -10.43 kcal Atomic # 14 Polarization: 21.19 SS G_CDS: -5.02 Total: 16.17 kcal Total LS contribution 4.67 Total: 4.67 kcal Total: -30.74 -7.39 -38.14 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000345918053.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -7.844 kcal (2) G-P(sol) polarization free energy of solvation -30.743 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -38.587 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.395 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.138 kcal (6) G-S(sol) free energy of system = (1) + (5) -45.982 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds