Wall clock time and date at job start Thu Apr 9 2020 12:09:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53000 * 109.47178 * 2 1 4 4 C 1.53003 * 109.47285 * 240.00069 * 2 1 3 5 5 C 1.50700 * 109.47122 * 59.99932 * 4 2 1 6 6 H 1.08001 * 119.99953 * 0.02562 * 5 4 2 7 7 C 1.37875 * 120.00162 * 179.97438 * 5 4 2 8 8 N 1.31513 * 119.99752 * 0.02562 * 7 5 4 9 9 Si 1.86798 * 120.00128 * 180.02562 * 7 5 4 10 10 H 1.48498 * 109.47427 * 359.97438 * 9 7 5 11 11 H 1.48499 * 109.46948 * 120.00472 * 9 7 5 12 12 H 1.48508 * 109.46940 * 239.99943 * 9 7 5 13 13 C 1.53000 * 109.46904 * 119.99964 * 2 1 3 14 14 N 1.46499 * 109.46981 * 300.00244 * 13 2 1 15 15 C 1.34777 * 119.99553 * 180.02562 * 14 13 2 16 16 O 1.21278 * 120.00088 * 359.97438 * 15 14 13 17 17 C 1.50703 * 119.99745 * 179.97438 * 15 14 13 18 18 C 1.53781 * 113.61417 * 179.97438 * 17 15 14 19 19 C 1.53786 * 87.17350 * 139.93966 * 18 17 15 20 20 C 1.53782 * 113.61283 * 277.49692 * 17 15 14 21 21 H 1.08994 * 109.47399 * 300.00587 * 1 2 3 22 22 H 1.09009 * 109.47172 * 59.99979 * 1 2 3 23 23 H 1.08997 * 109.47090 * 179.97438 * 1 2 3 24 24 H 1.08994 * 109.47199 * 179.97438 * 3 2 1 25 25 H 1.08996 * 109.47287 * 299.99866 * 3 2 1 26 26 H 1.09005 * 109.47075 * 59.99639 * 3 2 1 27 27 H 1.08994 * 109.47163 * 180.02562 * 4 2 1 28 28 H 1.09004 * 109.47011 * 300.00329 * 4 2 1 29 29 H 0.97001 * 120.00287 * 180.02562 * 8 7 5 30 30 H 1.08994 * 109.47005 * 180.02562 * 13 2 1 31 31 H 1.09004 * 109.46932 * 59.99953 * 13 2 1 32 32 H 0.96993 * 120.00243 * 359.97438 * 14 13 2 33 33 H 1.08996 * 112.85169 * 48.79875 * 17 15 14 34 34 H 1.09002 * 113.61445 * 254.52965 * 18 17 15 35 35 H 1.09002 * 113.61408 * 25.34696 * 18 17 15 36 36 H 1.08993 * 113.61491 * 89.15923 * 19 18 17 37 37 H 1.09000 * 113.61138 * 220.06261 * 19 18 17 38 38 H 1.08997 * 113.61668 * 334.56418 * 20 17 15 39 39 H 1.08998 * 113.61674 * 105.38927 * 20 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0401 -0.7212 -1.2493 5 6 1.5377 -0.0108 -2.4797 6 1 0.9171 0.8675 -2.3806 7 6 1.8713 -0.4815 -3.7320 8 7 2.6274 -1.5508 -3.8526 9 14 1.2492 0.3995 -5.2572 10 1 0.4236 1.5657 -4.8531 11 1 2.4045 0.8662 -6.0650 12 1 0.4245 -0.5338 -6.0661 13 6 2.0400 -0.7213 1.2493 14 7 1.5515 -0.0306 2.4454 15 6 1.8775 -0.4909 3.6695 16 8 2.5748 -1.4769 3.7807 17 6 1.3756 0.2199 4.8999 18 6 1.8344 -0.4292 6.2164 19 6 2.0385 0.9953 6.7590 20 6 2.2244 1.4395 5.2962 21 1 -0.3634 0.5139 0.8899 22 1 -0.3634 0.5139 -0.8901 23 1 -0.3633 -1.0276 -0.0005 24 1 3.1300 1.4425 0.0005 25 1 1.6767 1.9563 -0.8900 26 1 1.6766 1.9564 0.8900 27 1 3.1300 -0.7216 -1.2490 28 1 1.6767 -1.7489 -1.2493 29 1 2.8624 -1.8818 -4.7336 30 1 3.1299 -0.7209 1.2495 31 1 1.6766 -1.7489 1.2492 32 1 0.9942 0.7582 2.3564 33 1 0.3056 0.4242 4.8639 34 1 1.0469 -0.9826 6.7281 35 1 2.7597 -0.9978 6.1237 36 1 1.1503 1.4136 7.2325 37 1 2.9359 1.1062 7.3676 38 1 3.2571 1.3831 4.9521 39 1 1.7524 2.3941 5.0639 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000345918053.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 12:09:46 Heat of formation + Delta-G solvation = -65.058200 kcal Electronic energy + Delta-G solvation = -17361.894360 eV Core-core repulsion = 14689.277878 eV Total energy + Delta-G solvation = -2672.616482 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 239.163 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -41.28632 -39.17872 -37.95332 -35.23125 -33.90613 -29.33545 -28.51136 -27.96604 -26.68497 -26.44390 -24.69024 -21.84142 -20.47852 -19.70893 -18.40102 -18.27524 -16.93070 -16.59172 -16.41568 -15.98163 -15.42847 -15.02805 -14.78816 -14.38020 -13.95043 -13.88783 -13.68845 -13.36865 -12.96695 -12.85892 -12.69544 -12.59186 -12.35086 -12.23412 -12.12239 -11.94546 -11.54709 -11.40385 -11.26303 -11.11476 -10.88651 -10.58795 -10.52974 -10.05200 -8.14621 -6.22753 1.41824 1.42728 1.54677 1.65584 2.28660 2.45365 3.19980 3.57771 3.70473 3.84545 3.94962 3.97855 4.07299 4.22079 4.28930 4.68379 4.70353 4.73210 4.80392 4.83306 4.89893 4.96011 5.06679 5.10347 5.11967 5.12382 5.22192 5.40482 5.46959 5.49239 5.52781 5.55266 5.59352 5.79397 5.89318 6.29534 6.63594 6.92834 7.31272 7.45337 8.98282 Molecular weight = 239.16amu Principal moments of inertia in cm(-1) A = 0.056981 B = 0.004480 C = 0.004340 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 491.270948 B = 6248.884287 C = 6449.394256 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 C -0.065 4.065 3 C -0.121 4.121 4 C 0.039 3.961 5 C -0.513 4.513 6 H 0.074 0.926 7 C -0.006 4.006 8 N -0.940 5.940 9 Si 0.960 3.040 10 H -0.255 1.255 11 H -0.284 1.284 12 H -0.285 1.285 13 C 0.140 3.860 14 N -0.707 5.707 15 C 0.510 3.490 16 O -0.596 6.596 17 C -0.135 4.135 18 C -0.128 4.128 19 C -0.127 4.127 20 C -0.121 4.121 21 H 0.071 0.929 22 H 0.056 0.944 23 H 0.035 0.965 24 H 0.035 0.965 25 H 0.056 0.944 26 H 0.071 0.929 27 H -0.016 1.016 28 H -0.016 1.016 29 H 0.259 0.741 30 H 0.041 0.959 31 H 0.042 0.958 32 H 0.414 0.586 33 H 0.142 0.858 34 H 0.080 0.920 35 H 0.065 0.935 36 H 0.106 0.894 37 H 0.074 0.926 38 H 0.067 0.933 39 H 0.099 0.901 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.777 9.647 18.272 21.455 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C -0.065 4.065 3 C -0.178 4.178 4 C 0.001 3.999 5 C -0.551 4.551 6 H 0.092 0.908 7 C -0.203 4.203 8 N -0.581 5.581 9 Si 0.785 3.215 10 H -0.179 1.179 11 H -0.211 1.211 12 H -0.211 1.211 13 C 0.015 3.985 14 N -0.359 5.359 15 C 0.298 3.702 16 O -0.477 6.477 17 C -0.156 4.156 18 C -0.166 4.166 19 C -0.165 4.165 20 C -0.159 4.159 21 H 0.090 0.910 22 H 0.075 0.925 23 H 0.054 0.946 24 H 0.054 0.946 25 H 0.075 0.925 26 H 0.090 0.910 27 H 0.003 0.997 28 H 0.003 0.997 29 H 0.068 0.932 30 H 0.060 0.940 31 H 0.060 0.940 32 H 0.252 0.748 33 H 0.159 0.841 34 H 0.099 0.901 35 H 0.084 0.916 36 H 0.125 0.875 37 H 0.093 0.907 38 H 0.085 0.915 39 H 0.118 0.882 Dipole moment (debyes) X Y Z Total from point charges -5.222 8.862 18.214 20.917 hybrid contribution 0.082 -0.209 -1.512 1.529 sum -5.140 8.652 16.702 19.500 Atomic orbital electron populations 1.21695 0.93470 1.00937 1.01768 1.20707 0.96797 0.96338 0.92654 1.21690 0.99825 0.94549 1.01761 1.18987 0.94197 0.94184 0.92525 1.21628 1.30364 1.12071 0.91008 0.90783 1.25971 0.95649 0.95863 1.02807 1.70135 1.38852 1.25075 1.24051 0.85471 0.78053 0.78839 0.79130 1.17887 1.21053 1.21069 1.21191 0.97543 0.95338 0.84401 1.46034 1.53074 1.32016 1.04822 1.21383 0.79360 0.83815 0.85627 1.90659 1.40627 1.28890 1.87559 1.22969 1.03123 0.98732 0.90799 1.22817 1.01776 0.97821 0.94170 1.22854 1.03431 0.94578 0.95604 1.22868 0.99258 0.96815 0.96947 0.90976 0.92475 0.94552 0.94583 0.92476 0.90986 0.99748 0.99744 0.93178 0.94044 0.93972 0.74798 0.84074 0.90147 0.91605 0.87534 0.90695 0.91457 0.88212 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -4.06 8.05 71.98 0.58 -3.48 16 2 C -0.06 -2.45 0.54 -52.18 -0.03 -2.48 16 3 C -0.12 -4.04 8.05 71.98 0.58 -3.46 16 4 C 0.04 1.99 4.04 29.85 0.12 2.11 16 5 C -0.51 -27.55 7.65 25.60 0.20 -27.36 16 6 H 0.07 3.71 5.68 -2.91 -0.02 3.69 16 7 C -0.01 -0.35 5.46 84.65 0.46 0.11 16 8 N -0.94 -57.55 13.29 21.45 0.28 -57.27 16 9 Si 0.96 43.58 29.54 68.60 2.03 45.60 16 10 H -0.26 -10.75 7.11 99.48 0.71 -10.04 16 11 H -0.28 -12.81 7.11 99.48 0.71 -12.10 16 12 H -0.28 -12.82 7.11 99.48 0.71 -12.12 16 13 C 0.14 5.12 4.56 86.38 0.39 5.52 16 14 N -0.71 -19.61 4.96 -463.06 -2.30 -21.90 16 15 C 0.51 14.85 7.35 87.66 0.64 15.50 16 16 O -0.60 -23.47 15.90 -3.02 -0.05 -23.52 16 17 C -0.14 -2.52 4.15 -11.01 -0.05 -2.56 16 18 C -0.13 -2.39 7.40 31.12 0.23 -2.16 16 19 C -0.13 -1.61 8.10 31.20 0.25 -1.36 16 20 C -0.12 -1.81 7.64 31.20 0.24 -1.57 16 21 H 0.07 1.78 6.86 -2.39 -0.02 1.77 16 22 H 0.06 2.03 6.62 -2.38 -0.02 2.02 16 23 H 0.04 1.28 8.14 -2.39 -0.02 1.26 16 24 H 0.03 1.27 8.14 -2.39 -0.02 1.25 16 25 H 0.06 2.03 6.62 -2.39 -0.02 2.02 16 26 H 0.07 1.78 6.86 -2.38 -0.02 1.76 16 27 H -0.02 -0.91 8.14 -2.39 -0.02 -0.93 16 28 H -0.02 -0.91 8.14 -2.39 -0.02 -0.93 16 29 H 0.26 15.03 8.31 -92.71 -0.77 14.26 16 30 H 0.04 1.68 8.14 -2.39 -0.02 1.66 16 31 H 0.04 1.71 8.14 -2.39 -0.02 1.69 16 32 H 0.41 8.66 6.16 -92.71 -0.57 8.09 16 33 H 0.14 1.79 8.14 -2.39 -0.02 1.77 16 34 H 0.08 1.30 8.14 -2.39 -0.02 1.28 16 35 H 0.07 1.62 7.43 -2.39 -0.02 1.60 16 36 H 0.11 0.88 8.14 -2.39 -0.02 0.86 16 37 H 0.07 0.92 8.14 -2.39 -0.02 0.90 16 38 H 0.07 1.27 8.09 -2.39 -0.02 1.25 16 39 H 0.10 1.03 8.14 -2.39 -0.02 1.01 16 Total: -1.00 -70.30 310.18 4.04 -66.26 By element: Atomic # 1 Polarization: 11.57 SS G_CDS: 0.45 Total: 12.01 kcal Atomic # 6 Polarization: -24.81 SS G_CDS: 3.62 Total: -21.19 kcal Atomic # 7 Polarization: -77.16 SS G_CDS: -2.01 Total: -79.17 kcal Atomic # 8 Polarization: -23.47 SS G_CDS: -0.05 Total: -23.52 kcal Atomic # 14 Polarization: 43.58 SS G_CDS: 2.03 Total: 45.60 kcal Total: -70.30 4.04 -66.26 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000345918053.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 1.205 kcal (2) G-P(sol) polarization free energy of solvation -70.301 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -69.096 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.038 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.263 kcal (6) G-S(sol) free energy of system = (1) + (5) -65.058 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds