Wall clock time and date at job start Thu Apr 9 2020 12:09:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53002 * 109.46824 * 2 1 4 4 C 1.52999 * 109.46824 * 179.97438 * 3 2 1 5 5 H 1.09005 * 109.47006 * 54.99795 * 4 3 2 6 6 C 1.53002 * 109.47459 * 295.00101 * 4 3 2 7 7 C 1.53004 * 109.47260 * 174.99832 * 4 3 2 8 8 C 1.50696 * 109.47061 * 185.00065 * 7 4 3 9 9 O 1.21294 * 120.00222 * 359.97438 * 8 7 4 10 10 N 1.34778 * 120.00130 * 180.02562 * 8 7 4 11 11 C 1.37091 * 120.00324 * 179.97438 * 10 8 7 12 12 H 1.08007 * 119.99800 * 140.27555 * 11 10 8 13 13 C 1.38944 * 119.99981 * 320.27308 * 11 10 8 14 14 N 1.31414 * 120.00169 * 158.87517 * 13 11 10 15 15 Si 1.86797 * 120.00305 * 338.87376 * 13 11 10 16 16 H 1.48506 * 109.47119 * 93.60389 * 15 13 11 17 17 H 1.48506 * 109.47176 * 213.60349 * 15 13 11 18 18 H 1.48498 * 109.46953 * 333.60350 * 15 13 11 19 19 C 1.46507 * 119.99629 * 359.97438 * 10 8 7 20 20 C 1.53002 * 117.49720 * 182.10299 * 19 10 8 21 21 C 1.52999 * 59.99969 * 252.51337 * 20 19 10 22 22 H 1.08998 * 109.47428 * 300.00523 * 1 2 3 23 23 H 1.09007 * 109.47118 * 60.00298 * 1 2 3 24 24 H 1.09005 * 109.47405 * 179.97438 * 1 2 3 25 25 H 1.08998 * 109.46919 * 240.00050 * 2 1 3 26 26 H 1.09000 * 109.46905 * 120.00003 * 2 1 3 27 27 H 1.08998 * 109.47332 * 60.00303 * 3 2 1 28 28 H 1.09000 * 109.47381 * 299.99711 * 3 2 1 29 29 H 1.09001 * 109.46415 * 300.00169 * 6 4 3 30 30 H 1.08996 * 109.47105 * 59.99630 * 6 4 3 31 31 H 1.08998 * 109.47528 * 180.02562 * 6 4 3 32 32 H 1.09003 * 109.46834 * 64.99948 * 7 4 3 33 33 H 1.08995 * 109.46935 * 305.00059 * 7 4 3 34 34 H 0.96996 * 120.00879 * 180.02562 * 14 13 11 35 35 H 1.08997 * 115.54709 * 327.81219 * 19 10 8 36 36 H 1.08995 * 117.49947 * 359.97438 * 20 19 10 37 37 H 1.08997 * 117.49321 * 145.02127 * 20 19 10 38 38 H 1.09008 * 117.49619 * 252.51429 * 21 20 19 39 39 H 1.08998 * 117.52218 * 107.48175 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 3.5699 1.4425 0.0006 5 1 3.9336 0.8529 -0.8410 6 6 4.0795 0.8331 1.3083 7 6 4.0800 2.8796 -0.1251 8 6 5.5819 2.8705 -0.2480 9 8 6.1851 1.8182 -0.2357 10 7 6.2551 4.0317 -0.3706 11 6 7.6215 4.0235 -0.4818 12 1 8.1119 4.7039 -1.1623 13 6 8.3753 3.1399 0.2808 14 7 9.5950 2.8246 -0.0931 15 14 7.6551 2.4003 1.8376 16 1 7.0345 1.0887 1.5213 17 1 8.7342 2.2086 2.8397 18 1 6.6241 3.3156 2.3894 19 6 5.5266 5.3027 -0.3849 20 6 6.3427 6.5826 -0.5760 21 6 5.7437 6.2546 0.7931 22 1 -0.3634 0.5139 0.8899 23 1 -0.3634 0.5138 -0.8901 24 1 -0.3634 -1.0277 -0.0005 25 1 1.8933 -0.5138 -0.8900 26 1 1.8933 -0.5138 0.8900 27 1 1.6766 1.9564 0.8900 28 1 1.6766 1.9564 -0.8900 29 1 3.7157 1.4227 2.1498 30 1 3.7161 -0.1906 1.3979 31 1 5.1694 0.8335 1.3089 32 1 3.7913 3.4463 0.7601 33 1 3.6458 3.3430 -1.0109 34 1 10.1212 2.2075 0.4390 35 1 4.5313 5.2690 -0.8280 36 1 7.4217 6.4791 -0.6908 37 1 5.8844 7.3913 -1.1452 38 1 4.8913 6.8477 1.1246 39 1 6.4282 5.9351 1.5788 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000346533799.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 12:09:50 Heat of formation + Delta-G solvation = -18.100900 kcal Electronic energy + Delta-G solvation = -18067.940862 eV Core-core repulsion = 15397.360601 eV Total energy + Delta-G solvation = -2670.580261 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 239.163 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -39.28960 -37.00598 -35.95448 -33.00442 -32.27265 -31.38424 -27.85858 -26.37388 -24.54712 -22.15379 -21.75151 -21.17069 -19.92465 -18.80963 -16.90592 -16.16834 -15.49523 -15.31750 -14.39790 -14.25774 -13.84799 -13.71617 -13.29548 -13.05163 -12.82449 -12.49939 -12.10538 -11.80212 -11.71902 -11.29616 -11.21708 -11.02971 -10.74228 -10.70753 -10.33581 -10.30278 -10.21615 -10.18734 -9.95056 -9.91540 -9.58833 -8.45293 -8.28307 -7.44412 -6.15405 -3.89087 3.33626 3.50828 3.67565 3.85081 4.37624 4.51885 4.67997 4.93042 5.02420 5.12904 5.21760 5.37401 5.44953 5.48532 5.53666 5.63687 5.72317 5.81784 5.83192 5.86845 5.97138 6.02943 6.10455 6.15650 6.17186 6.20095 6.29396 6.34706 6.40263 6.53188 6.70767 6.81170 6.86200 7.00845 7.88668 8.01619 8.82973 8.98330 9.48387 9.89030 10.89299 Molecular weight = 239.16amu Principal moments of inertia in cm(-1) A = 0.024797 B = 0.008282 C = 0.006858 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1128.891946 B = 3380.138006 C = 4081.837871 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.127 4.127 3 C -0.114 4.114 4 C -0.073 4.073 5 H 0.077 0.923 6 C -0.162 4.162 7 C -0.129 4.129 8 C 0.449 3.551 9 O -0.539 6.539 10 N -0.438 5.438 11 C -0.351 4.351 12 H 0.094 0.906 13 C 0.092 3.908 14 N -0.867 5.867 15 Si 0.910 3.090 16 H -0.243 1.243 17 H -0.314 1.314 18 H -0.282 1.282 19 C 0.065 3.935 20 C -0.173 4.173 21 C -0.200 4.200 22 H 0.051 0.949 23 H 0.051 0.949 24 H 0.050 0.950 25 H 0.060 0.940 26 H 0.064 0.936 27 H 0.058 0.942 28 H 0.058 0.942 29 H 0.041 0.959 30 H 0.047 0.953 31 H 0.084 0.916 32 H 0.076 0.924 33 H 0.078 0.922 34 H 0.271 0.729 35 H 0.110 0.890 36 H 0.110 0.890 37 H 0.087 0.913 38 H 0.086 0.914 39 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.121 1.076 1.537 15.237 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.164 4.164 3 C -0.152 4.152 4 C -0.092 4.092 5 H 0.095 0.905 6 C -0.218 4.218 7 C -0.170 4.170 8 C 0.240 3.760 9 O -0.421 6.421 10 N -0.159 5.159 11 C -0.476 4.476 12 H 0.112 0.888 13 C -0.117 4.117 14 N -0.502 5.502 15 Si 0.742 3.258 16 H -0.170 1.170 17 H -0.244 1.244 18 H -0.208 1.208 19 C -0.041 4.041 20 C -0.211 4.211 21 C -0.239 4.239 22 H 0.070 0.930 23 H 0.070 0.930 24 H 0.069 0.931 25 H 0.079 0.921 26 H 0.082 0.918 27 H 0.077 0.923 28 H 0.077 0.923 29 H 0.060 0.940 30 H 0.066 0.934 31 H 0.103 0.897 32 H 0.095 0.905 33 H 0.096 0.904 34 H 0.081 0.919 35 H 0.128 0.872 36 H 0.128 0.872 37 H 0.105 0.895 38 H 0.104 0.896 39 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges -14.634 0.451 1.535 14.721 hybrid contribution -0.246 -0.095 0.813 0.855 sum -14.880 0.356 2.349 15.068 Atomic orbital electron populations 1.21781 0.96383 1.01158 1.01515 1.21578 0.95146 0.97426 1.02252 1.21685 0.95545 0.96425 1.01495 1.20846 0.93420 0.95317 0.99598 0.90504 1.22153 1.04452 0.99303 0.95941 1.21665 0.94715 0.98153 1.02440 1.20274 0.88854 0.84372 0.82467 1.90502 1.69200 1.30216 1.52224 1.43204 1.06312 1.01823 1.64557 1.18746 0.78651 1.24997 1.25255 0.88821 1.25277 0.94337 0.94466 0.97607 1.69761 1.11071 1.31900 1.37440 0.86521 0.77506 0.81922 0.79877 1.16962 1.24444 1.20776 1.21803 0.96301 0.83842 1.02117 1.23115 1.01753 0.97230 0.99002 1.23267 1.03273 1.04372 0.93016 0.92981 0.92959 0.93136 0.92080 0.91782 0.92320 0.92281 0.94036 0.93376 0.89706 0.90543 0.90376 0.91917 0.87204 0.87174 0.89502 0.89598 0.88701 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.45 9.91 37.16 0.37 -1.09 16 2 C -0.13 -1.47 5.69 -26.73 -0.15 -1.62 16 3 C -0.11 -1.45 4.68 -26.73 -0.13 -1.57 16 4 C -0.07 -1.21 2.04 -90.62 -0.18 -1.39 16 5 H 0.08 1.39 7.96 -51.93 -0.41 0.98 16 6 C -0.16 -2.87 8.69 37.16 0.32 -2.55 16 7 C -0.13 -2.29 3.81 -27.88 -0.11 -2.40 16 8 C 0.45 10.61 5.64 -10.99 -0.06 10.55 16 9 O -0.54 -14.62 9.46 5.54 0.05 -14.57 16 10 N -0.44 -10.57 2.54 -107.73 -0.27 -10.85 16 11 C -0.35 -9.90 8.74 -14.94 -0.13 -10.03 16 12 H 0.09 2.76 6.96 -52.48 -0.37 2.40 16 13 C 0.09 2.73 4.81 -17.47 -0.08 2.65 16 14 N -0.87 -26.81 13.96 55.50 0.77 -26.04 16 15 Si 0.91 24.45 24.27 -169.99 -4.13 20.33 16 16 H -0.24 -6.65 4.85 56.52 0.27 -6.38 16 17 H -0.31 -8.41 7.11 56.52 0.40 -8.01 16 18 H -0.28 -7.34 7.11 56.52 0.40 -6.94 16 19 C 0.07 1.24 5.85 -67.93 -0.40 0.84 16 20 C -0.17 -3.01 9.79 -26.73 -0.26 -3.28 16 21 C -0.20 -3.46 10.37 -26.73 -0.28 -3.74 16 22 H 0.05 0.48 8.14 -51.93 -0.42 0.05 16 23 H 0.05 0.48 8.14 -51.92 -0.42 0.05 16 24 H 0.05 0.44 8.14 -51.93 -0.42 0.02 16 25 H 0.06 0.72 8.14 -51.93 -0.42 0.30 16 26 H 0.06 0.76 6.56 -51.93 -0.34 0.42 16 27 H 0.06 0.71 8.14 -51.93 -0.42 0.29 16 28 H 0.06 0.70 8.14 -51.93 -0.42 0.27 16 29 H 0.04 0.68 8.14 -51.93 -0.42 0.25 16 30 H 0.05 0.75 6.56 -51.93 -0.34 0.41 16 31 H 0.08 1.86 4.00 -51.93 -0.21 1.66 16 32 H 0.08 1.27 8.11 -51.93 -0.42 0.85 16 33 H 0.08 1.20 7.57 -51.93 -0.39 0.81 16 34 H 0.27 7.93 8.31 -40.82 -0.34 7.59 16 35 H 0.11 1.73 7.00 -51.93 -0.36 1.37 16 36 H 0.11 2.20 6.49 -51.93 -0.34 1.86 16 37 H 0.09 1.22 8.14 -51.93 -0.42 0.80 16 38 H 0.09 1.20 8.14 -51.92 -0.42 0.78 16 39 H 0.09 1.88 8.14 -51.93 -0.42 1.45 16 LS Contribution 300.24 15.07 4.52 4.52 Total: -1.00 -32.14 300.24 -6.81 -38.95 By element: Atomic # 1 Polarization: 7.96 SS G_CDS: -6.67 Total: 1.28 kcal Atomic # 6 Polarization: -12.54 SS G_CDS: -1.09 Total: -13.63 kcal Atomic # 7 Polarization: -37.38 SS G_CDS: 0.50 Total: -36.88 kcal Atomic # 8 Polarization: -14.62 SS G_CDS: 0.05 Total: -14.57 kcal Atomic # 14 Polarization: 24.45 SS G_CDS: -4.13 Total: 20.33 kcal Total LS contribution 4.52 Total: 4.52 kcal Total: -32.14 -6.81 -38.95 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000346533799.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 20.845 kcal (2) G-P(sol) polarization free energy of solvation -32.137 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -11.291 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.809 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.946 kcal (6) G-S(sol) free energy of system = (1) + (5) -18.101 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds