Wall clock time and date at job start Thu Apr 9 2020 12:09:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53002 * 109.46824 * 2 1 4 4 C 1.52999 * 109.46824 * 179.97438 * 3 2 1 5 5 H 1.09005 * 109.47006 * 54.99795 * 4 3 2 6 6 C 1.53002 * 109.47459 * 295.00101 * 4 3 2 7 7 C 1.53004 * 109.47260 * 174.99832 * 4 3 2 8 8 C 1.50696 * 109.47061 * 185.00065 * 7 4 3 9 9 O 1.21294 * 120.00222 * 359.97438 * 8 7 4 10 10 N 1.34778 * 120.00130 * 180.02562 * 8 7 4 11 11 C 1.37091 * 120.00324 * 179.97438 * 10 8 7 12 12 H 1.08007 * 119.99800 * 140.27555 * 11 10 8 13 13 C 1.38944 * 119.99981 * 320.27308 * 11 10 8 14 14 N 1.31414 * 120.00169 * 158.87517 * 13 11 10 15 15 Si 1.86797 * 120.00305 * 338.87376 * 13 11 10 16 16 H 1.48506 * 109.47119 * 93.60389 * 15 13 11 17 17 H 1.48506 * 109.47176 * 213.60349 * 15 13 11 18 18 H 1.48498 * 109.46953 * 333.60350 * 15 13 11 19 19 C 1.46507 * 119.99629 * 359.97438 * 10 8 7 20 20 C 1.53002 * 117.49720 * 182.10299 * 19 10 8 21 21 C 1.52999 * 59.99969 * 252.51337 * 20 19 10 22 22 H 1.08998 * 109.47428 * 300.00523 * 1 2 3 23 23 H 1.09007 * 109.47118 * 60.00298 * 1 2 3 24 24 H 1.09005 * 109.47405 * 179.97438 * 1 2 3 25 25 H 1.08998 * 109.46919 * 240.00050 * 2 1 3 26 26 H 1.09000 * 109.46905 * 120.00003 * 2 1 3 27 27 H 1.08998 * 109.47332 * 60.00303 * 3 2 1 28 28 H 1.09000 * 109.47381 * 299.99711 * 3 2 1 29 29 H 1.09001 * 109.46415 * 300.00169 * 6 4 3 30 30 H 1.08996 * 109.47105 * 59.99630 * 6 4 3 31 31 H 1.08998 * 109.47528 * 180.02562 * 6 4 3 32 32 H 1.09003 * 109.46834 * 64.99948 * 7 4 3 33 33 H 1.08995 * 109.46935 * 305.00059 * 7 4 3 34 34 H 0.96996 * 120.00879 * 180.02562 * 14 13 11 35 35 H 1.08997 * 115.54709 * 327.81219 * 19 10 8 36 36 H 1.08995 * 117.49947 * 359.97438 * 20 19 10 37 37 H 1.08997 * 117.49321 * 145.02127 * 20 19 10 38 38 H 1.09008 * 117.49619 * 252.51429 * 21 20 19 39 39 H 1.08998 * 117.52218 * 107.48175 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 3.5699 1.4425 0.0006 5 1 3.9336 0.8529 -0.8410 6 6 4.0795 0.8331 1.3083 7 6 4.0800 2.8796 -0.1251 8 6 5.5819 2.8705 -0.2480 9 8 6.1851 1.8182 -0.2357 10 7 6.2551 4.0317 -0.3706 11 6 7.6215 4.0235 -0.4818 12 1 8.1119 4.7039 -1.1623 13 6 8.3753 3.1399 0.2808 14 7 9.5950 2.8246 -0.0931 15 14 7.6551 2.4003 1.8376 16 1 7.0345 1.0887 1.5213 17 1 8.7342 2.2086 2.8397 18 1 6.6241 3.3156 2.3894 19 6 5.5266 5.3027 -0.3849 20 6 6.3427 6.5826 -0.5760 21 6 5.7437 6.2546 0.7931 22 1 -0.3634 0.5139 0.8899 23 1 -0.3634 0.5138 -0.8901 24 1 -0.3634 -1.0277 -0.0005 25 1 1.8933 -0.5138 -0.8900 26 1 1.8933 -0.5138 0.8900 27 1 1.6766 1.9564 0.8900 28 1 1.6766 1.9564 -0.8900 29 1 3.7157 1.4227 2.1498 30 1 3.7161 -0.1906 1.3979 31 1 5.1694 0.8335 1.3089 32 1 3.7913 3.4463 0.7601 33 1 3.6458 3.3430 -1.0109 34 1 10.1212 2.2075 0.4390 35 1 4.5313 5.2690 -0.8280 36 1 7.4217 6.4791 -0.6908 37 1 5.8844 7.3913 -1.1452 38 1 4.8913 6.8477 1.1246 39 1 6.4282 5.9351 1.5788 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000346533799.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 12:09:49 Heat of formation + Delta-G solvation = -38.078167 kcal Electronic energy + Delta-G solvation = -18068.807142 eV Core-core repulsion = 15397.360601 eV Total energy + Delta-G solvation = -2671.446540 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 239.163 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -41.04619 -38.41720 -37.36497 -34.91650 -33.55867 -33.26267 -29.40944 -27.47342 -26.40981 -23.58805 -23.04071 -22.53767 -21.32155 -20.44511 -18.79791 -17.83101 -17.31937 -16.55656 -15.99071 -15.78503 -15.39466 -15.19503 -14.78172 -14.48702 -14.33965 -14.20376 -13.52244 -13.20941 -12.96616 -12.88714 -12.56429 -12.31661 -12.27933 -12.16144 -12.00347 -11.77726 -11.64764 -11.47978 -11.42073 -11.24789 -11.14970 -10.65964 -10.14723 -9.36591 -8.41551 -6.12146 1.21180 1.33547 1.50135 1.99355 2.43441 2.69338 2.97526 3.25530 3.80267 3.90744 4.01497 4.09590 4.19768 4.30411 4.30893 4.36025 4.47687 4.59703 4.74664 4.80508 4.85693 4.88563 4.93026 4.98216 5.02422 5.09839 5.19558 5.26571 5.29319 5.34903 5.45760 5.49348 5.58695 5.63589 5.72099 5.86808 6.79692 6.95462 7.40327 7.95465 8.66715 Molecular weight = 239.16amu Principal moments of inertia in cm(-1) A = 0.024797 B = 0.008282 C = 0.006858 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1128.891946 B = 3380.138006 C = 4081.837871 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.129 4.129 3 C -0.103 4.103 4 C -0.071 4.071 5 H 0.052 0.948 6 C -0.162 4.162 7 C -0.119 4.119 8 C 0.441 3.559 9 O -0.581 6.581 10 N -0.458 5.458 11 C -0.340 4.340 12 H 0.067 0.933 13 C 0.041 3.959 14 N -0.915 5.915 15 Si 0.961 3.039 16 H -0.255 1.255 17 H -0.319 1.319 18 H -0.268 1.268 19 C 0.045 3.955 20 C -0.171 4.171 21 C -0.186 4.186 22 H 0.058 0.942 23 H 0.059 0.941 24 H 0.055 0.945 25 H 0.052 0.948 26 H 0.057 0.943 27 H 0.073 0.927 28 H 0.075 0.925 29 H 0.055 0.945 30 H 0.062 0.938 31 H 0.039 0.961 32 H 0.100 0.900 33 H 0.111 0.889 34 H 0.270 0.730 35 H 0.155 0.845 36 H 0.072 0.928 37 H 0.129 0.871 38 H 0.133 0.867 39 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.266 2.438 1.952 19.517 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.166 4.166 3 C -0.141 4.141 4 C -0.090 4.090 5 H 0.071 0.929 6 C -0.219 4.219 7 C -0.159 4.159 8 C 0.234 3.766 9 O -0.466 6.466 10 N -0.179 5.179 11 C -0.467 4.467 12 H 0.085 0.915 13 C -0.163 4.163 14 N -0.553 5.553 15 Si 0.792 3.208 16 H -0.182 1.182 17 H -0.250 1.250 18 H -0.193 1.193 19 C -0.059 4.059 20 C -0.209 4.209 21 C -0.224 4.224 22 H 0.078 0.922 23 H 0.078 0.922 24 H 0.075 0.925 25 H 0.071 0.929 26 H 0.076 0.924 27 H 0.092 0.908 28 H 0.094 0.906 29 H 0.074 0.926 30 H 0.080 0.920 31 H 0.058 0.942 32 H 0.118 0.882 33 H 0.130 0.870 34 H 0.079 0.921 35 H 0.172 0.828 36 H 0.090 0.910 37 H 0.147 0.853 38 H 0.151 0.849 39 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -18.809 1.849 1.954 19.001 hybrid contribution 1.010 -0.483 0.589 1.265 sum -17.799 1.366 2.543 18.031 Atomic orbital electron populations 1.21742 0.94589 1.01878 1.02224 1.21583 0.96694 0.96717 1.01634 1.21604 0.92055 0.97405 1.02995 1.20847 0.96247 0.94103 0.97848 0.92907 1.22112 1.01445 1.00898 0.97414 1.21715 0.89640 0.99594 1.04966 1.21457 0.91522 0.83409 0.80254 1.90477 1.70737 1.31887 1.53533 1.43427 1.05023 1.04403 1.65014 1.18651 0.81064 1.23320 1.23659 0.91514 1.25937 0.94711 0.95525 1.00086 1.69856 1.12569 1.33941 1.38931 0.85693 0.76788 0.81012 0.77333 1.18164 1.24980 1.19279 1.22254 0.97748 0.81676 1.04213 1.23143 0.99813 0.97837 1.00086 1.23308 1.03888 1.03562 0.91678 0.92245 0.92235 0.92540 0.92868 0.92417 0.90847 0.90627 0.92571 0.91951 0.94203 0.88213 0.87046 0.92120 0.82813 0.90986 0.85260 0.84887 0.91954 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.30 9.91 71.98 0.71 -1.59 16 2 C -0.13 -2.61 5.69 30.59 0.17 -2.43 16 3 C -0.10 -2.20 4.68 30.59 0.14 -2.05 16 4 C -0.07 -2.18 2.04 -10.79 -0.02 -2.20 16 5 H 0.05 1.86 7.96 -2.38 -0.02 1.84 16 6 C -0.16 -5.49 8.69 71.98 0.63 -4.87 16 7 C -0.12 -3.80 3.81 29.85 0.11 -3.68 16 8 C 0.44 20.34 5.64 87.66 0.49 20.83 16 9 O -0.58 -32.01 9.46 -3.07 -0.03 -32.04 16 10 N -0.46 -21.69 2.54 -613.12 -1.56 -23.25 16 11 C -0.34 -19.72 8.74 84.04 0.73 -18.99 16 12 H 0.07 4.14 6.96 -2.91 -0.02 4.12 16 13 C 0.04 2.51 4.81 84.92 0.41 2.92 16 14 N -0.91 -59.40 13.96 21.66 0.30 -59.10 16 15 Si 0.96 52.26 24.27 68.60 1.66 53.92 16 16 H -0.25 -14.29 4.85 99.48 0.48 -13.81 16 17 H -0.32 -17.25 7.11 99.48 0.71 -16.54 16 18 H -0.27 -13.63 7.11 99.48 0.71 -12.92 16 19 C 0.05 1.56 5.85 44.99 0.26 1.83 16 20 C -0.17 -5.54 9.79 30.59 0.30 -5.24 16 21 C -0.19 -5.78 10.37 30.59 0.32 -5.46 16 22 H 0.06 0.85 8.14 -2.39 -0.02 0.83 16 23 H 0.06 0.85 8.14 -2.38 -0.02 0.83 16 24 H 0.06 0.82 8.14 -2.38 -0.02 0.80 16 25 H 0.05 1.15 8.14 -2.39 -0.02 1.13 16 26 H 0.06 1.23 6.56 -2.39 -0.02 1.21 16 27 H 0.07 1.39 8.14 -2.39 -0.02 1.37 16 28 H 0.08 1.40 8.14 -2.39 -0.02 1.38 16 29 H 0.06 1.69 8.14 -2.39 -0.02 1.67 16 30 H 0.06 1.87 6.56 -2.39 -0.02 1.86 16 31 H 0.04 1.74 4.00 -2.39 -0.01 1.73 16 32 H 0.10 2.78 8.11 -2.39 -0.02 2.76 16 33 H 0.11 2.83 7.57 -2.39 -0.02 2.82 16 34 H 0.27 16.65 8.31 -92.71 -0.77 15.88 16 35 H 0.15 3.93 7.00 -2.39 -0.02 3.92 16 36 H 0.07 2.90 6.49 -2.39 -0.02 2.89 16 37 H 0.13 3.07 8.14 -2.39 -0.02 3.05 16 38 H 0.13 2.92 8.14 -2.38 -0.02 2.90 16 39 H 0.06 2.37 8.14 -2.39 -0.02 2.35 16 Total: -1.00 -74.80 300.24 5.43 -69.37 By element: Atomic # 1 Polarization: 11.26 SS G_CDS: 0.78 Total: 12.04 kcal Atomic # 6 Polarization: -25.21 SS G_CDS: 4.27 Total: -20.94 kcal Atomic # 7 Polarization: -81.10 SS G_CDS: -1.26 Total: -82.35 kcal Atomic # 8 Polarization: -32.01 SS G_CDS: -0.03 Total: -32.04 kcal Atomic # 14 Polarization: 52.26 SS G_CDS: 1.66 Total: 53.92 kcal Total: -74.80 5.43 -69.37 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000346533799.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 31.294 kcal (2) G-P(sol) polarization free energy of solvation -74.799 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -43.505 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.427 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.372 kcal (6) G-S(sol) free energy of system = (1) + (5) -38.078 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds