Wall clock time and date at job start Thu Apr 9 2020 12:10:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53002 * 109.46918 * 2 1 4 4 H 1.09000 * 109.47312 * 54.99761 * 3 2 1 5 5 C 1.52996 * 109.46969 * 294.99821 * 3 2 1 6 6 C 1.53002 * 109.46972 * 180.02562 * 5 3 2 7 7 C 1.52997 * 109.47415 * 59.99860 * 6 5 3 8 8 C 1.53006 * 109.47164 * 300.00027 * 7 6 5 9 9 C 1.52997 * 109.47092 * 174.99881 * 3 2 1 10 10 H 1.09000 * 109.47140 * 59.99774 * 9 3 2 11 11 C 1.50706 * 109.46909 * 300.00075 * 9 3 2 12 12 O 1.21278 * 120.00184 * 359.97438 * 11 9 3 13 13 N 1.34782 * 119.99786 * 179.97438 * 11 9 3 14 14 C 1.46496 * 119.99817 * 179.97438 * 13 11 9 15 15 C 1.50701 * 109.46957 * 180.02562 * 14 13 11 16 16 H 1.07995 * 119.99918 * 359.97438 * 15 14 13 17 17 C 1.37880 * 119.99755 * 180.02562 * 15 14 13 18 18 N 1.31515 * 120.00246 * 359.97438 * 17 15 14 19 19 Si 1.86805 * 119.99777 * 179.97438 * 17 15 14 20 20 H 1.48495 * 109.46933 * 90.00038 * 19 17 15 21 21 H 1.48503 * 109.46845 * 210.00250 * 19 17 15 22 22 H 1.48499 * 109.46907 * 329.99737 * 19 17 15 23 23 H 1.09002 * 109.47527 * 300.00126 * 1 2 3 24 24 H 1.09000 * 109.47048 * 60.00211 * 1 2 3 25 25 H 1.09001 * 109.47217 * 180.02562 * 1 2 3 26 26 H 1.08994 * 109.47199 * 239.99902 * 2 1 3 27 27 H 1.09000 * 109.47048 * 119.99789 * 2 1 3 28 28 H 1.08992 * 109.47534 * 60.00418 * 5 3 2 29 29 H 1.08996 * 109.47134 * 299.99612 * 5 3 2 30 30 H 1.09000 * 109.46986 * 299.99742 * 6 5 3 31 31 H 1.09001 * 109.47601 * 180.02562 * 6 5 3 32 32 H 1.09001 * 109.46922 * 180.02562 * 7 6 5 33 33 H 1.09000 * 109.47140 * 59.99976 * 7 6 5 34 34 H 1.08993 * 109.46955 * 180.02562 * 8 7 6 35 35 H 1.09000 * 109.47050 * 300.00004 * 8 7 6 36 36 H 0.97002 * 119.99886 * 0.02562 * 13 11 9 37 37 H 1.09000 * 109.47217 * 300.00310 * 14 13 11 38 38 H 1.09001 * 109.47054 * 60.00738 * 14 13 11 39 39 H 0.97001 * 120.00170 * 179.97438 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6053 1.9816 0.8418 5 6 1.6352 2.1265 -1.3073 6 6 2.1457 3.5688 -1.3076 7 6 3.6705 3.5702 -1.1821 8 6 4.0753 2.8862 0.1253 9 6 3.5648 1.4444 0.1257 10 1 3.9994 0.9054 -0.7160 11 6 3.9634 0.7706 1.4135 12 8 3.1118 0.3325 2.1576 13 7 5.2664 0.6549 1.7382 14 6 5.6539 0.0004 2.9903 15 6 7.1558 0.0022 3.1141 16 1 7.7611 0.4460 2.3376 17 6 7.7571 -0.5638 4.2182 18 7 7.0200 -1.1047 5.1636 19 14 9.6189 -0.5623 4.3714 20 1 10.0567 0.6705 5.0739 21 1 10.0528 -1.7535 5.1447 22 1 10.2269 -0.6029 3.0172 23 1 -0.3634 0.5138 0.8900 24 1 -0.3633 0.5138 -0.8900 25 1 -0.3634 -1.0277 0.0005 26 1 1.8933 -0.5138 -0.8899 27 1 1.8933 -0.5138 0.8900 28 1 0.5490 2.1252 -1.3970 29 1 2.0699 1.5875 -2.1491 30 1 1.7114 4.1081 -0.4658 31 1 1.8570 4.0564 -2.2388 32 1 4.0341 4.5978 -1.1819 33 1 4.1049 3.0310 -2.0239 34 1 5.1616 2.8876 0.2149 35 1 3.6410 3.4255 0.9671 36 1 5.9475 1.0056 1.1432 37 1 5.2196 0.5401 3.8319 38 1 5.2902 -1.0271 2.9908 39 1 7.4431 -1.5032 5.9402 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000357103458.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 12:10:08 Heat of formation + Delta-G solvation = -101.298667 kcal Electronic energy + Delta-G solvation = -17635.742525 eV Core-core repulsion = 14961.554538 eV Total energy + Delta-G solvation = -2674.187987 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 239.163 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -41.31365 -38.74220 -36.21438 -34.85957 -34.19048 -32.13739 -29.91161 -29.14457 -25.41331 -24.59098 -23.72423 -21.53241 -21.33898 -20.63283 -18.94204 -17.58402 -17.04921 -16.34112 -16.16560 -15.77638 -15.46497 -14.97982 -14.80232 -14.47833 -14.13508 -14.08163 -13.66308 -13.44121 -13.34514 -12.88237 -12.72208 -12.48696 -12.36169 -12.22912 -12.04453 -11.92240 -11.60455 -11.48932 -11.40394 -11.25301 -10.83529 -10.80357 -10.26118 -9.77336 -8.30163 -6.47096 1.42057 1.44709 1.55973 1.80499 2.32421 2.62860 3.04590 3.66402 3.75331 3.83968 4.16564 4.27708 4.38373 4.39930 4.46353 4.51392 4.55934 4.65235 4.79778 4.87491 4.98008 5.04542 5.11139 5.18102 5.22921 5.23636 5.25371 5.30603 5.37924 5.40399 5.46513 5.48429 5.64143 5.65714 5.74674 5.85532 6.64377 6.94093 7.22764 7.53421 8.82136 Molecular weight = 239.16amu Principal moments of inertia in cm(-1) A = 0.034292 B = 0.005390 C = 0.004797 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 816.319646 B = 5194.023785 C = 5835.880581 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.136 4.136 3 C -0.060 4.060 4 H 0.050 0.950 5 C -0.108 4.108 6 C -0.120 4.120 7 C -0.110 4.110 8 C -0.110 4.110 9 C -0.092 4.092 10 H 0.111 0.889 11 C 0.495 3.505 12 O -0.593 6.593 13 N -0.709 5.709 14 C 0.267 3.733 15 C -0.556 4.556 16 H 0.083 0.917 17 C 0.003 3.997 18 N -0.932 5.932 19 Si 0.985 3.015 20 H -0.270 1.270 21 H -0.284 1.284 22 H -0.255 1.255 23 H 0.040 0.960 24 H 0.074 0.926 25 H 0.051 0.949 26 H 0.063 0.937 27 H 0.049 0.951 28 H 0.075 0.925 29 H 0.074 0.926 30 H 0.053 0.947 31 H 0.082 0.918 32 H 0.076 0.924 33 H 0.077 0.923 34 H 0.072 0.928 35 H 0.050 0.950 36 H 0.406 0.594 37 H -0.016 1.016 38 H -0.015 1.015 39 H 0.269 0.731 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.906 8.961 -16.605 20.093 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.173 4.173 3 C -0.079 4.079 4 H 0.068 0.932 5 C -0.145 4.145 6 C -0.158 4.158 7 C -0.148 4.148 8 C -0.148 4.148 9 C -0.113 4.113 10 H 0.129 0.871 11 C 0.283 3.717 12 O -0.475 6.475 13 N -0.358 5.358 14 C 0.144 3.856 15 C -0.594 4.594 16 H 0.101 0.899 17 C -0.196 4.196 18 N -0.571 5.571 19 Si 0.808 3.192 20 H -0.195 1.195 21 H -0.209 1.209 22 H -0.179 1.179 23 H 0.059 0.941 24 H 0.093 0.907 25 H 0.070 0.930 26 H 0.082 0.918 27 H 0.068 0.932 28 H 0.094 0.906 29 H 0.093 0.907 30 H 0.072 0.928 31 H 0.101 0.899 32 H 0.095 0.905 33 H 0.096 0.904 34 H 0.091 0.909 35 H 0.069 0.931 36 H 0.241 0.759 37 H 0.002 0.998 38 H 0.003 0.997 39 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -7.483 8.555 -15.904 19.548 hybrid contribution 0.995 -0.378 0.858 1.367 sum -6.488 8.177 -15.046 18.313 Atomic orbital electron populations 1.21718 0.94904 1.01490 1.01787 1.21785 0.97008 0.96782 1.01743 1.20894 0.91921 0.96285 0.98818 0.93181 1.21624 1.01442 0.95789 0.95641 1.21579 0.95504 0.96325 1.02365 1.21516 0.96264 1.00977 0.96001 1.21538 1.01048 0.92529 0.99638 1.21412 0.98457 0.97714 0.93689 0.87091 1.21592 0.82104 0.79043 0.88966 1.90571 1.50950 1.51454 1.54501 1.46258 1.07339 1.58681 1.23555 1.18502 0.95098 0.90499 0.81482 1.21618 0.91082 1.39647 1.07022 0.89897 1.26084 1.04820 0.93963 0.94737 1.70144 1.38249 1.38409 1.10258 0.85148 0.77253 0.77783 0.78981 1.19546 1.20921 1.17862 0.94071 0.90727 0.92967 0.91820 0.93212 0.90647 0.90737 0.92788 0.89931 0.90490 0.90416 0.90928 0.93137 0.75887 0.99790 0.99714 0.92256 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.42 9.67 71.98 0.70 -2.73 16 2 C -0.14 -3.95 5.14 30.60 0.16 -3.79 16 3 C -0.06 -1.61 1.36 -10.80 -0.01 -1.62 16 4 H 0.05 1.57 8.10 -2.39 -0.02 1.55 16 5 C -0.11 -1.96 4.96 30.59 0.15 -1.81 16 6 C -0.12 -1.93 5.92 30.59 0.18 -1.75 16 7 C -0.11 -1.82 5.92 30.60 0.18 -1.64 16 8 C -0.11 -2.58 5.10 30.58 0.16 -2.43 16 9 C -0.09 -2.59 2.06 -11.55 -0.02 -2.62 16 10 H 0.11 2.70 8.14 -2.39 -0.02 2.68 16 11 C 0.49 20.43 6.83 87.66 0.60 21.03 16 12 O -0.59 -29.86 13.67 -3.02 -0.04 -29.90 16 13 N -0.71 -30.97 5.44 -466.78 -2.54 -33.51 16 14 C 0.27 15.06 5.43 85.63 0.46 15.52 16 15 C -0.56 -30.77 9.28 25.60 0.24 -30.54 16 16 H 0.08 4.14 7.60 -2.91 -0.02 4.12 16 17 C 0.00 0.19 5.46 84.66 0.46 0.65 16 18 N -0.93 -57.07 13.29 21.45 0.28 -56.78 16 19 Si 0.99 42.70 29.54 68.60 2.03 44.72 16 20 H -0.27 -11.29 7.11 99.48 0.71 -10.58 16 21 H -0.28 -12.17 7.11 99.48 0.71 -11.46 16 22 H -0.25 -10.25 7.11 99.48 0.71 -9.54 16 23 H 0.04 1.07 8.14 -2.39 -0.02 1.05 16 24 H 0.07 1.40 6.57 -2.39 -0.02 1.38 16 25 H 0.05 1.20 8.14 -2.39 -0.02 1.18 16 26 H 0.06 1.64 8.14 -2.39 -0.02 1.62 16 27 H 0.05 1.92 5.42 -2.39 -0.01 1.91 16 28 H 0.07 1.24 6.56 -2.39 -0.02 1.22 16 29 H 0.07 1.19 8.14 -2.39 -0.02 1.17 16 30 H 0.05 0.96 8.14 -2.39 -0.02 0.94 16 31 H 0.08 1.00 8.14 -2.39 -0.02 0.98 16 32 H 0.08 1.10 8.14 -2.39 -0.02 1.08 16 33 H 0.08 1.10 8.14 -2.39 -0.02 1.08 16 34 H 0.07 1.65 7.56 -2.39 -0.02 1.63 16 35 H 0.05 1.35 8.14 -2.39 -0.02 1.33 16 36 H 0.41 14.80 7.74 -92.71 -0.72 14.09 16 37 H -0.02 -1.01 8.14 -2.39 -0.02 -1.03 16 38 H -0.02 -0.96 8.14 -2.39 -0.02 -0.98 16 39 H 0.27 15.32 8.31 -92.71 -0.77 14.55 16 Total: -1.00 -70.47 305.93 3.27 -67.19 By element: Atomic # 1 Polarization: 19.68 SS G_CDS: 0.30 Total: 19.98 kcal Atomic # 6 Polarization: -14.95 SS G_CDS: 3.25 Total: -11.70 kcal Atomic # 7 Polarization: -88.04 SS G_CDS: -2.25 Total: -90.29 kcal Atomic # 8 Polarization: -29.86 SS G_CDS: -0.04 Total: -29.90 kcal Atomic # 14 Polarization: 42.70 SS G_CDS: 2.03 Total: 44.72 kcal Total: -70.47 3.27 -67.19 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000357103458.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -34.107 kcal (2) G-P(sol) polarization free energy of solvation -70.465 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -104.573 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.274 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.191 kcal (6) G-S(sol) free energy of system = (1) + (5) -101.299 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds