Wall clock time and date at job start Thu Apr 9 2020 12:10:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52998 * 109.47062 * 2 1 4 4 C 1.53006 * 109.47062 * 180.02562 * 3 2 1 5 5 C 1.52998 * 109.47062 * 179.97438 * 4 3 2 6 6 C 1.53002 * 109.47066 * 174.99393 * 5 4 3 7 7 H 1.09001 * 109.86937 * 306.47492 * 6 5 4 8 8 C 1.54321 * 109.88431 * 67.49348 * 6 5 4 9 9 C 1.55402 * 102.82414 * 141.51803 * 8 6 5 10 10 C 1.54905 * 101.67115 * 324.66334 * 9 8 6 11 11 N 1.47016 * 109.88169 * 185.46686 * 6 5 4 12 12 C 1.34778 * 125.65163 * 61.67345 * 11 6 5 13 13 O 1.21685 * 120.00152 * 5.08654 * 12 11 6 14 14 C 1.46375 * 120.00073 * 185.08677 * 12 11 6 15 15 H 1.08000 * 120.00382 * 354.94010 * 14 12 11 16 16 C 1.40048 * 120.00311 * 174.94165 * 14 12 11 17 17 N 1.30677 * 119.99607 * 5.07210 * 16 14 12 18 18 Si 1.86798 * 120.00257 * 185.07439 * 16 14 12 19 19 H 1.48504 * 109.47043 * 95.00056 * 18 16 14 20 20 H 1.48495 * 109.46927 * 214.99739 * 18 16 14 21 21 H 1.48499 * 109.47106 * 334.99537 * 18 16 14 22 22 H 1.08994 * 109.47404 * 180.02562 * 1 2 3 23 23 H 1.09007 * 109.46922 * 299.99862 * 1 2 3 24 24 H 1.08997 * 109.47430 * 60.00014 * 1 2 3 25 25 H 1.08999 * 109.46583 * 240.00125 * 2 1 3 26 26 H 1.08997 * 109.47430 * 119.99986 * 2 1 3 27 27 H 1.08994 * 109.47458 * 60.00110 * 3 2 1 28 28 H 1.09007 * 109.46900 * 299.99673 * 3 2 1 29 29 H 1.08999 * 109.47015 * 59.99860 * 4 3 2 30 30 H 1.08997 * 109.46521 * 299.99484 * 4 3 2 31 31 H 1.09002 * 109.46862 * 294.99324 * 5 4 3 32 32 H 1.08998 * 109.47467 * 54.99201 * 5 4 3 33 33 H 1.08994 * 110.72085 * 259.97656 * 8 6 5 34 34 H 1.09004 * 110.71662 * 23.25256 * 8 6 5 35 35 H 1.09008 * 111.03568 * 206.52649 * 9 8 6 36 36 H 1.09003 * 110.92095 * 82.75208 * 9 8 6 37 37 H 1.09004 * 110.36543 * 278.08831 * 10 9 8 38 38 H 1.08996 * 110.36989 * 155.76438 * 10 9 8 39 39 H 0.96996 * 119.99916 * 180.02562 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5701 1.4425 -0.0006 5 6 4.0800 2.8850 -0.0013 6 6 5.6049 2.8868 0.1239 7 1 5.9060 2.3024 0.9934 8 6 6.2371 2.2928 -1.1524 9 6 7.4904 3.1868 -1.3647 10 6 6.9748 4.5675 -0.8878 11 7 6.0941 4.2670 0.2556 12 6 5.7886 5.1166 1.2563 13 8 5.1238 4.7313 2.2000 14 6 6.2564 6.5027 1.2080 15 1 6.9137 6.8235 0.4134 16 6 5.8517 7.4131 2.1923 17 7 5.1381 7.0033 3.2075 18 14 6.3317 9.2130 2.0540 19 1 5.2319 9.9701 1.4040 20 1 6.5786 9.7651 3.4102 21 1 7.5663 9.3347 1.2377 22 1 -0.3634 -1.0276 0.0005 23 1 -0.3633 0.5138 0.8901 24 1 -0.3634 0.5138 -0.8899 25 1 1.8933 -0.5138 -0.8900 26 1 1.8934 -0.5138 0.8899 27 1 1.6767 1.9563 0.8899 28 1 1.6767 1.9563 -0.8901 29 1 3.9330 0.9288 -0.8908 30 1 3.9337 0.9286 0.8892 31 1 3.7914 3.3719 -0.9328 32 1 3.6457 3.4243 0.8404 33 1 6.5243 1.2536 -0.9927 34 1 5.5541 2.3799 -1.9974 35 1 7.7750 3.2181 -2.4165 36 1 8.3212 2.8454 -0.7473 37 1 6.4115 5.0572 -1.6822 38 1 7.8079 5.1946 -0.5704 39 1 4.8575 7.6339 3.8890 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000357121057.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 12:10:22 Heat of formation + Delta-G solvation = -70.923628 kcal Electronic energy + Delta-G solvation = -17455.729652 eV Core-core repulsion = 14782.858826 eV Total energy + Delta-G solvation = -2672.870826 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 239.163 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -38.73406 -36.05547 -35.39382 -32.51554 -32.26976 -30.23934 -28.56189 -26.10553 -25.13315 -22.49240 -21.32421 -20.92319 -20.22797 -18.53211 -16.51643 -15.75080 -15.46082 -15.19066 -14.27226 -14.04493 -13.70834 -13.26015 -13.08333 -12.75974 -12.58255 -12.44267 -11.89808 -11.79899 -11.48584 -11.23722 -11.16338 -10.96342 -10.89486 -10.73673 -10.56679 -10.41683 -10.34397 -10.26274 -10.11306 -10.05008 -9.76906 -8.82311 -7.55007 -7.10550 -6.17191 -4.60609 3.14816 3.21908 3.25452 4.10638 4.58413 4.60233 4.97512 5.03984 5.15794 5.20208 5.26032 5.35600 5.48825 5.66802 5.70616 5.83963 5.85088 5.86115 5.94908 5.98780 6.07628 6.13475 6.16175 6.19915 6.26967 6.35010 6.41419 6.49237 6.52047 6.65679 6.70691 6.91814 7.06829 7.46601 7.51780 8.16932 8.48295 9.05095 9.56777 10.61450 10.81104 Molecular weight = 239.16amu Principal moments of inertia in cm(-1) A = 0.023583 B = 0.006056 C = 0.005044 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1187.003768 B = 4622.440177 C = 5549.462194 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.124 4.124 3 C -0.120 4.120 4 C -0.113 4.113 5 C -0.126 4.126 6 C 0.146 3.854 7 H 0.055 0.945 8 C -0.126 4.126 9 C -0.136 4.136 10 C 0.119 3.881 11 N -0.642 5.642 12 C 0.573 3.427 13 O -0.574 6.574 14 C -0.541 4.541 15 H 0.068 0.932 16 C 0.088 3.912 17 N -0.769 5.769 18 Si 0.906 3.094 19 H -0.273 1.273 20 H -0.279 1.279 21 H -0.265 1.265 22 H 0.049 0.951 23 H 0.054 0.946 24 H 0.052 0.948 25 H 0.057 0.943 26 H 0.059 0.941 27 H 0.062 0.938 28 H 0.058 0.942 29 H 0.055 0.945 30 H 0.058 0.942 31 H 0.052 0.948 32 H 0.079 0.921 33 H 0.067 0.933 34 H 0.068 0.932 35 H 0.069 0.931 36 H 0.067 0.933 37 H 0.045 0.955 38 H 0.067 0.933 39 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.650 -9.259 -9.121 13.102 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.161 4.161 3 C -0.158 4.158 4 C -0.151 4.151 5 C -0.165 4.165 6 C 0.042 3.958 7 H 0.073 0.927 8 C -0.164 4.164 9 C -0.175 4.175 10 C -0.006 4.006 11 N -0.382 5.382 12 C 0.379 3.621 13 O -0.456 6.456 14 C -0.578 4.578 15 H 0.087 0.913 16 C -0.132 4.132 17 N -0.397 5.397 18 Si 0.731 3.269 19 H -0.198 1.198 20 H -0.205 1.205 21 H -0.189 1.189 22 H 0.068 0.932 23 H 0.073 0.927 24 H 0.071 0.929 25 H 0.076 0.924 26 H 0.078 0.922 27 H 0.081 0.919 28 H 0.076 0.924 29 H 0.073 0.927 30 H 0.077 0.923 31 H 0.071 0.929 32 H 0.098 0.902 33 H 0.085 0.915 34 H 0.087 0.913 35 H 0.087 0.913 36 H 0.086 0.914 37 H 0.063 0.937 38 H 0.085 0.915 39 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -2.132 -9.353 -8.327 12.703 hybrid contribution 0.260 0.940 -0.165 0.989 sum -1.872 -8.413 -8.492 12.099 Atomic orbital electron populations 1.21784 0.96297 1.01102 1.01815 1.21540 0.95486 0.97476 1.01648 1.21623 0.96029 0.96011 1.02100 1.21542 0.94807 0.97484 1.01243 1.21942 0.96208 0.95775 1.02567 1.21161 0.92955 0.85851 0.95883 0.92736 1.22725 0.97123 0.98643 0.97925 1.22842 0.97592 0.96474 1.00550 1.21859 0.93910 0.95236 0.89586 1.48774 1.51466 1.12289 1.25625 1.17982 0.79951 0.84887 0.79259 1.90594 1.43697 1.77733 1.33601 1.20928 1.31895 0.93039 1.11901 0.91344 1.25713 0.93431 1.00059 0.93974 1.70029 1.27146 1.34971 1.07598 0.86379 0.79528 0.82849 0.78142 1.19813 1.20450 1.18880 0.93167 0.92736 0.92916 0.92387 0.92188 0.91875 0.92372 0.92653 0.92310 0.92889 0.90237 0.91464 0.91347 0.91258 0.91410 0.93672 0.91498 0.92165 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.56 9.91 37.16 0.37 -1.19 16 2 C -0.12 -1.41 5.93 -26.73 -0.16 -1.57 16 3 C -0.12 -1.64 5.21 -26.73 -0.14 -1.78 16 4 C -0.11 -1.68 4.99 -26.73 -0.13 -1.81 16 5 C -0.13 -2.40 4.69 -26.73 -0.13 -2.52 16 6 C 0.15 2.89 2.86 -66.96 -0.19 2.70 16 7 H 0.05 1.16 8.14 -51.93 -0.42 0.74 16 8 C -0.13 -1.88 5.73 -24.76 -0.14 -2.03 16 9 C -0.14 -2.02 7.09 -24.45 -0.17 -2.19 16 10 C 0.12 2.25 6.46 -2.53 -0.02 2.23 16 11 N -0.64 -15.08 3.06 -164.67 -0.50 -15.58 16 12 C 0.57 16.68 7.49 -12.99 -0.10 16.58 16 13 O -0.57 -18.75 14.21 5.20 0.07 -18.68 16 14 C -0.54 -15.54 8.99 -35.63 -0.32 -15.86 16 15 H 0.07 1.82 6.73 -52.49 -0.35 1.47 16 16 C 0.09 2.48 5.50 -17.36 -0.10 2.38 16 17 N -0.77 -23.27 11.85 55.55 0.66 -22.61 16 18 Si 0.91 20.38 29.56 -169.99 -5.03 15.35 16 19 H -0.27 -6.01 7.11 56.52 0.40 -5.60 16 20 H -0.28 -6.14 7.11 56.52 0.40 -5.73 16 21 H -0.26 -5.74 7.11 56.52 0.40 -5.34 16 22 H 0.05 0.45 8.14 -51.93 -0.42 0.02 16 23 H 0.05 0.57 8.14 -51.93 -0.42 0.15 16 24 H 0.05 0.52 8.14 -51.93 -0.42 0.09 16 25 H 0.06 0.61 8.14 -51.93 -0.42 0.18 16 26 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 27 H 0.06 0.95 8.14 -51.93 -0.42 0.53 16 28 H 0.06 0.77 8.14 -51.93 -0.42 0.35 16 29 H 0.05 0.72 7.65 -51.93 -0.40 0.33 16 30 H 0.06 0.90 8.14 -51.93 -0.42 0.48 16 31 H 0.05 0.98 8.01 -51.93 -0.42 0.56 16 32 H 0.08 1.86 6.88 -51.93 -0.36 1.51 16 33 H 0.07 0.87 8.14 -51.93 -0.42 0.45 16 34 H 0.07 0.95 7.76 -51.93 -0.40 0.54 16 35 H 0.07 0.84 8.14 -51.92 -0.42 0.41 16 36 H 0.07 0.99 8.14 -51.93 -0.42 0.57 16 37 H 0.05 0.82 8.14 -51.93 -0.42 0.40 16 38 H 0.07 1.29 7.29 -51.93 -0.38 0.92 16 39 H 0.27 7.35 8.29 -40.82 -0.34 7.01 16 LS Contribution 313.32 15.07 4.72 4.72 Total: -1.00 -33.34 313.32 -8.24 -41.57 By element: Atomic # 1 Polarization: 7.21 SS G_CDS: -6.94 Total: 0.28 kcal Atomic # 6 Polarization: -3.83 SS G_CDS: -1.22 Total: -5.06 kcal Atomic # 7 Polarization: -38.35 SS G_CDS: 0.15 Total: -38.19 kcal Atomic # 8 Polarization: -18.75 SS G_CDS: 0.07 Total: -18.68 kcal Atomic # 14 Polarization: 20.38 SS G_CDS: -5.03 Total: 15.35 kcal Total LS contribution 4.72 Total: 4.72 kcal Total: -33.34 -8.24 -41.57 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000357121057.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -29.352 kcal (2) G-P(sol) polarization free energy of solvation -33.336 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -62.688 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.236 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.572 kcal (6) G-S(sol) free energy of system = (1) + (5) -70.924 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds