Wall clock time and date at job start Thu Apr 9 2020 12:09:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52997 * 109.46900 * 2 1 4 4 C 1.53008 * 109.47178 * 179.97438 * 3 2 1 5 5 H 1.09002 * 115.55626 * 29.31824 * 4 3 2 6 6 C 1.52994 * 117.50320 * 243.62543 * 4 3 2 7 7 C 1.52997 * 117.50037 * 174.99953 * 4 3 2 8 8 H 1.08998 * 117.49759 * 359.97438 * 7 4 3 9 9 C 1.50696 * 117.49875 * 214.98139 * 7 4 3 10 10 O 1.21274 * 120.00347 * 0.02562 * 9 7 4 11 11 N 1.34778 * 119.99830 * 180.02562 * 9 7 4 12 12 C 1.46506 * 119.99945 * 180.02562 * 11 9 7 13 13 C 1.52996 * 109.46955 * 179.97438 * 12 11 9 14 14 C 1.52998 * 109.46929 * 179.97438 * 13 12 11 15 15 C 1.50706 * 109.47348 * 179.97438 * 14 13 12 16 16 H 1.08005 * 119.99758 * 359.97438 * 15 14 13 17 17 C 1.37871 * 120.00102 * 179.97438 * 15 14 13 18 18 N 1.31516 * 120.00217 * 0.02562 * 17 15 14 19 19 Si 1.86800 * 119.99766 * 179.97438 * 17 15 14 20 20 H 1.48501 * 109.47057 * 179.97438 * 19 17 15 21 21 H 1.48500 * 109.47389 * 300.00068 * 19 17 15 22 22 H 1.48504 * 109.47102 * 60.00417 * 19 17 15 23 23 H 1.08999 * 109.46992 * 179.97438 * 1 2 3 24 24 H 1.08997 * 109.47284 * 299.99604 * 1 2 3 25 25 H 1.09005 * 109.47235 * 60.00171 * 1 2 3 26 26 H 1.08997 * 109.47284 * 240.00396 * 2 1 3 27 27 H 1.08995 * 109.47133 * 119.99971 * 2 1 3 28 28 H 1.09000 * 109.47324 * 60.00127 * 3 2 1 29 29 H 1.08999 * 109.47702 * 299.99922 * 3 2 1 30 30 H 1.08996 * 117.50073 * 145.01529 * 6 4 3 31 31 H 1.09004 * 117.49676 * 359.97438 * 6 4 3 32 32 H 0.96998 * 120.00160 * 359.97438 * 11 9 7 33 33 H 1.09000 * 109.46973 * 59.99731 * 12 11 9 34 34 H 1.09002 * 109.46843 * 299.99613 * 12 11 9 35 35 H 1.09000 * 109.47441 * 60.00089 * 13 12 11 36 36 H 1.09002 * 109.47087 * 299.99535 * 13 12 11 37 37 H 1.09001 * 109.47671 * 60.00109 * 14 13 12 38 38 H 1.09006 * 109.47297 * 299.99829 * 14 13 12 39 39 H 0.97001 * 119.99646 * 359.97438 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 3.5700 1.4426 0.0006 5 1 4.0405 0.5851 -0.4805 6 6 4.2760 2.0456 1.2166 7 6 4.2765 2.7945 -0.1175 8 1 3.6512 3.6839 -0.1962 9 6 5.5695 2.8387 -0.8902 10 8 6.0120 1.8264 -1.3903 11 7 6.2343 4.0033 -1.0253 12 6 7.4911 4.0464 -1.7769 13 6 8.0353 5.4763 -1.7789 14 6 9.3482 5.5212 -2.5633 15 6 9.8840 6.9298 -2.5658 16 1 9.3420 7.7146 -2.0590 17 6 11.0660 7.2166 -3.2151 18 7 11.7257 6.2610 -3.8327 19 14 11.7297 8.9627 -3.2188 20 1 13.0046 9.0060 -3.9790 21 1 10.7405 9.8669 -3.8584 22 1 11.9720 9.4031 -1.8214 23 1 -0.3633 -1.0277 -0.0005 24 1 -0.3634 0.5137 0.8900 25 1 -0.3634 0.5138 -0.8900 26 1 1.8933 -0.5137 -0.8900 27 1 1.8933 -0.5138 0.8899 28 1 1.6766 1.9563 0.8900 29 1 1.6766 1.9564 -0.8899 30 1 5.2109 1.5849 1.5356 31 1 3.6504 2.4428 2.0161 32 1 5.8802 4.8131 -0.6257 33 1 7.3121 3.7247 -2.8029 34 1 8.2172 3.3816 -1.3090 35 1 8.2142 5.7985 -0.7531 36 1 7.3091 6.1408 -2.2471 37 1 9.1698 5.1990 -3.5892 38 1 10.0743 4.8568 -2.0948 39 1 11.3808 5.3544 -3.8310 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000360163880.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 12:09:12 Heat of formation + Delta-G solvation = -58.466705 kcal Electronic energy + Delta-G solvation = -16173.079607 eV Core-core repulsion = 13500.748953 eV Total energy + Delta-G solvation = -2672.330654 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 239.163 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -39.95778 -37.45797 -35.47421 -34.10226 -33.56786 -31.13428 -27.92544 -26.59353 -24.13242 -22.57081 -22.13075 -20.91867 -20.76571 -19.71651 -17.21212 -16.82542 -15.67811 -15.48797 -15.37255 -14.79636 -14.19306 -13.83104 -13.73502 -13.54661 -13.01910 -12.91295 -12.50299 -12.28672 -11.86545 -11.63867 -11.58348 -11.31772 -11.11731 -10.91415 -10.79914 -10.44347 -10.21308 -10.19065 -10.02558 -10.01836 -9.58272 -8.83900 -8.57855 -8.34330 -6.37530 -4.07314 2.56408 3.26199 3.42905 3.44888 3.63820 3.68834 4.36993 4.53783 4.55362 4.62817 4.80002 4.86790 4.99825 5.04933 5.24084 5.39625 5.42728 5.46634 5.51324 5.55145 5.63313 5.66727 5.75274 5.77644 5.93307 5.97014 6.03795 6.14934 6.39571 6.46505 6.72566 6.84446 7.34935 7.47468 7.67600 8.17460 8.36707 8.43863 8.86351 9.65334 11.03191 Molecular weight = 239.16amu Principal moments of inertia in cm(-1) A = 0.073958 B = 0.002967 C = 0.002929 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 378.503396 B = 9436.343925 C = 9557.005268 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.123 4.123 3 C -0.090 4.090 4 C -0.119 4.119 5 H 0.118 0.882 6 C -0.149 4.149 7 C -0.190 4.190 8 H 0.122 0.878 9 C 0.536 3.464 10 O -0.546 6.546 11 N -0.722 5.722 12 C 0.116 3.884 13 C -0.113 4.113 14 C 0.010 3.990 15 C -0.604 4.604 16 H 0.049 0.951 17 C 0.013 3.987 18 N -0.912 5.912 19 Si 1.070 2.930 20 H -0.282 1.282 21 H -0.288 1.288 22 H -0.288 1.288 23 H 0.053 0.947 24 H 0.053 0.947 25 H 0.054 0.946 26 H 0.064 0.936 27 H 0.063 0.937 28 H 0.065 0.935 29 H 0.067 0.933 30 H 0.098 0.902 31 H 0.103 0.897 32 H 0.399 0.601 33 H 0.063 0.937 34 H 0.063 0.937 35 H 0.056 0.944 36 H 0.056 0.944 37 H 0.010 0.990 38 H 0.010 0.990 39 H 0.269 0.731 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.585 -8.129 10.116 24.335 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.160 4.160 3 C -0.127 4.127 4 C -0.138 4.138 5 H 0.136 0.864 6 C -0.187 4.187 7 C -0.211 4.211 8 H 0.140 0.860 9 C 0.322 3.678 10 O -0.424 6.424 11 N -0.372 5.372 12 C -0.007 4.007 13 C -0.151 4.151 14 C -0.027 4.027 15 C -0.642 4.642 16 H 0.067 0.933 17 C -0.190 4.190 18 N -0.548 5.548 19 Si 0.898 3.102 20 H -0.207 1.207 21 H -0.214 1.214 22 H -0.215 1.215 23 H 0.072 0.928 24 H 0.072 0.928 25 H 0.073 0.927 26 H 0.082 0.918 27 H 0.082 0.918 28 H 0.083 0.917 29 H 0.086 0.914 30 H 0.117 0.883 31 H 0.121 0.879 32 H 0.233 0.767 33 H 0.081 0.919 34 H 0.081 0.919 35 H 0.075 0.925 36 H 0.075 0.925 37 H 0.028 0.972 38 H 0.028 0.972 39 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -18.988 -7.905 9.195 22.529 hybrid contribution -1.396 -0.401 0.724 1.623 sum -20.383 -8.305 9.919 24.142 Atomic orbital electron populations 1.21782 0.95896 1.01621 1.01758 1.21503 0.95612 0.96523 1.02389 1.21245 0.91956 0.97362 1.02168 1.22445 0.94593 0.95596 1.01118 0.86446 1.23092 1.03101 1.02177 0.90293 1.22323 0.97963 0.98766 1.02081 0.86032 1.19664 0.84662 0.83432 0.80011 1.90683 1.68782 1.34102 1.48859 1.46117 1.25139 1.10536 1.55444 1.21645 0.83782 0.99578 0.95710 1.21746 0.99681 0.92453 1.01261 1.19163 0.91057 0.97943 0.94574 1.22014 1.10038 0.94132 1.38018 0.93294 1.25881 0.94136 1.05698 0.93320 1.70780 1.40580 1.02581 1.40828 0.83530 0.76292 0.74038 0.76322 1.20739 1.21444 1.21451 0.92758 0.92811 0.92735 0.91751 0.91811 0.91666 0.91391 0.88312 0.87888 0.76682 0.91861 0.91887 0.92534 0.92536 0.97183 0.97183 0.92029 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.95 9.91 37.16 0.37 -0.58 16 2 C -0.12 -0.89 5.89 -26.73 -0.16 -1.04 16 3 C -0.09 -0.70 5.50 -26.73 -0.15 -0.84 16 4 C -0.12 -1.19 5.25 -90.62 -0.48 -1.67 16 5 H 0.12 1.41 7.60 -51.93 -0.39 1.01 16 6 C -0.15 -1.39 9.88 -26.73 -0.26 -1.65 16 7 C -0.19 -2.07 5.91 -91.78 -0.54 -2.61 16 8 H 0.12 1.06 8.14 -51.93 -0.42 0.63 16 9 C 0.54 8.17 7.61 -10.99 -0.08 8.09 16 10 O -0.55 -10.53 16.26 5.56 0.09 -10.43 16 11 N -0.72 -10.68 5.56 -60.29 -0.33 -11.02 16 12 C 0.12 2.09 5.67 -4.04 -0.02 2.07 16 13 C -0.11 -2.27 5.27 -26.73 -0.14 -2.41 16 14 C 0.01 0.26 4.28 -27.88 -0.12 0.14 16 15 C -0.60 -17.24 9.11 -34.44 -0.31 -17.55 16 16 H 0.05 1.36 7.74 -52.48 -0.41 0.95 16 17 C 0.01 0.39 5.46 -17.82 -0.10 0.30 16 18 N -0.91 -28.27 13.65 55.43 0.76 -27.51 16 19 Si 1.07 25.33 29.90 -169.99 -5.08 20.24 16 20 H -0.28 -6.69 7.11 56.52 0.40 -6.29 16 21 H -0.29 -6.48 7.11 56.52 0.40 -6.07 16 22 H -0.29 -6.48 7.11 56.52 0.40 -6.08 16 23 H 0.05 0.31 8.14 -51.93 -0.42 -0.11 16 24 H 0.05 0.31 8.14 -51.93 -0.42 -0.12 16 25 H 0.05 0.33 8.14 -51.93 -0.42 -0.09 16 26 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 27 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 28 H 0.06 0.44 7.87 -51.93 -0.41 0.03 16 29 H 0.07 0.53 8.14 -51.93 -0.42 0.11 16 30 H 0.10 1.01 8.14 -51.93 -0.42 0.59 16 31 H 0.10 0.73 8.03 -51.93 -0.42 0.31 16 32 H 0.40 4.76 8.47 -40.82 -0.35 4.41 16 33 H 0.06 1.21 8.14 -51.93 -0.42 0.79 16 34 H 0.06 1.20 8.14 -51.93 -0.42 0.78 16 35 H 0.06 1.10 8.14 -51.93 -0.42 0.67 16 36 H 0.06 1.09 8.14 -51.93 -0.42 0.67 16 37 H 0.01 0.27 8.01 -51.93 -0.42 -0.15 16 38 H 0.01 0.27 8.01 -51.93 -0.42 -0.15 16 39 H 0.27 8.33 7.22 -40.82 -0.29 8.03 16 LS Contribution 327.10 15.07 4.93 4.93 Total: -1.00 -32.91 327.10 -8.61 -41.51 By element: Atomic # 1 Polarization: 7.01 SS G_CDS: -6.97 Total: 0.04 kcal Atomic # 6 Polarization: -15.77 SS G_CDS: -2.00 Total: -17.76 kcal Atomic # 7 Polarization: -38.95 SS G_CDS: 0.42 Total: -38.53 kcal Atomic # 8 Polarization: -10.53 SS G_CDS: 0.09 Total: -10.43 kcal Atomic # 14 Polarization: 25.33 SS G_CDS: -5.08 Total: 20.24 kcal Total LS contribution 4.93 Total: 4.93 kcal Total: -32.91 -8.61 -41.51 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000360163880.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -16.952 kcal (2) G-P(sol) polarization free energy of solvation -32.909 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -49.861 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.606 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.514 kcal (6) G-S(sol) free energy of system = (1) + (5) -58.467 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds