Wall clock time and date at job start Thu Apr 9 2020 12:09:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52997 * 109.46900 * 2 1 4 4 C 1.53008 * 109.47178 * 179.97438 * 3 2 1 5 5 H 1.09002 * 115.55626 * 29.31824 * 4 3 2 6 6 C 1.52994 * 117.50320 * 243.62543 * 4 3 2 7 7 C 1.52997 * 117.50037 * 174.99953 * 4 3 2 8 8 H 1.08998 * 117.49759 * 359.97438 * 7 4 3 9 9 C 1.50696 * 117.49875 * 214.98139 * 7 4 3 10 10 O 1.21274 * 120.00347 * 0.02562 * 9 7 4 11 11 N 1.34778 * 119.99830 * 180.02562 * 9 7 4 12 12 C 1.46506 * 119.99945 * 180.02562 * 11 9 7 13 13 C 1.52996 * 109.46955 * 179.97438 * 12 11 9 14 14 C 1.52998 * 109.46929 * 179.97438 * 13 12 11 15 15 C 1.50706 * 109.47348 * 179.97438 * 14 13 12 16 16 H 1.08005 * 119.99758 * 359.97438 * 15 14 13 17 17 C 1.37871 * 120.00102 * 179.97438 * 15 14 13 18 18 N 1.31516 * 120.00217 * 0.02562 * 17 15 14 19 19 Si 1.86800 * 119.99766 * 179.97438 * 17 15 14 20 20 H 1.48501 * 109.47057 * 179.97438 * 19 17 15 21 21 H 1.48500 * 109.47389 * 300.00068 * 19 17 15 22 22 H 1.48504 * 109.47102 * 60.00417 * 19 17 15 23 23 H 1.08999 * 109.46992 * 179.97438 * 1 2 3 24 24 H 1.08997 * 109.47284 * 299.99604 * 1 2 3 25 25 H 1.09005 * 109.47235 * 60.00171 * 1 2 3 26 26 H 1.08997 * 109.47284 * 240.00396 * 2 1 3 27 27 H 1.08995 * 109.47133 * 119.99971 * 2 1 3 28 28 H 1.09000 * 109.47324 * 60.00127 * 3 2 1 29 29 H 1.08999 * 109.47702 * 299.99922 * 3 2 1 30 30 H 1.08996 * 117.50073 * 145.01529 * 6 4 3 31 31 H 1.09004 * 117.49676 * 359.97438 * 6 4 3 32 32 H 0.96998 * 120.00160 * 359.97438 * 11 9 7 33 33 H 1.09000 * 109.46973 * 59.99731 * 12 11 9 34 34 H 1.09002 * 109.46843 * 299.99613 * 12 11 9 35 35 H 1.09000 * 109.47441 * 60.00089 * 13 12 11 36 36 H 1.09002 * 109.47087 * 299.99535 * 13 12 11 37 37 H 1.09001 * 109.47671 * 60.00109 * 14 13 12 38 38 H 1.09006 * 109.47297 * 299.99829 * 14 13 12 39 39 H 0.97001 * 119.99646 * 359.97438 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 3.5700 1.4426 0.0006 5 1 4.0405 0.5851 -0.4805 6 6 4.2760 2.0456 1.2166 7 6 4.2765 2.7945 -0.1175 8 1 3.6512 3.6839 -0.1962 9 6 5.5695 2.8387 -0.8902 10 8 6.0120 1.8264 -1.3903 11 7 6.2343 4.0033 -1.0253 12 6 7.4911 4.0464 -1.7769 13 6 8.0353 5.4763 -1.7789 14 6 9.3482 5.5212 -2.5633 15 6 9.8840 6.9298 -2.5658 16 1 9.3420 7.7146 -2.0590 17 6 11.0660 7.2166 -3.2151 18 7 11.7257 6.2610 -3.8327 19 14 11.7297 8.9627 -3.2188 20 1 13.0046 9.0060 -3.9790 21 1 10.7405 9.8669 -3.8584 22 1 11.9720 9.4031 -1.8214 23 1 -0.3633 -1.0277 -0.0005 24 1 -0.3634 0.5137 0.8900 25 1 -0.3634 0.5138 -0.8900 26 1 1.8933 -0.5137 -0.8900 27 1 1.8933 -0.5138 0.8899 28 1 1.6766 1.9563 0.8900 29 1 1.6766 1.9564 -0.8899 30 1 5.2109 1.5849 1.5356 31 1 3.6504 2.4428 2.0161 32 1 5.8802 4.8131 -0.6257 33 1 7.3121 3.7247 -2.8029 34 1 8.2172 3.3816 -1.3090 35 1 8.2142 5.7985 -0.7531 36 1 7.3091 6.1408 -2.2471 37 1 9.1698 5.1990 -3.5892 38 1 10.0743 4.8568 -2.0948 39 1 11.3808 5.3544 -3.8310 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000360163880.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 12:09:11 Heat of formation + Delta-G solvation = -78.671941 kcal Electronic energy + Delta-G solvation = -16173.955772 eV Core-core repulsion = 13500.748953 eV Total energy + Delta-G solvation = -2673.206819 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 239.163 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -41.11626 -38.40403 -37.07247 -35.47362 -34.74354 -32.94388 -28.91431 -28.02119 -25.67326 -24.09919 -22.80981 -22.58092 -21.52152 -20.90697 -18.95557 -18.30618 -16.98690 -16.81505 -16.11868 -15.80299 -15.63984 -15.44234 -15.09716 -14.97707 -14.20612 -13.77748 -13.70948 -13.60844 -13.13617 -12.94069 -12.64972 -12.59356 -12.22105 -12.08559 -11.95186 -11.87106 -11.83041 -11.68465 -11.22356 -11.06162 -10.87070 -10.65403 -10.56041 -10.20329 -8.70617 -6.41933 1.41785 1.53236 1.62140 1.81110 2.08137 2.57621 2.82956 3.14706 3.58244 3.72021 3.83786 3.99790 4.04753 4.16897 4.20741 4.29241 4.36577 4.38396 4.63508 4.73673 4.78672 4.84948 4.87466 4.92390 4.93928 4.99063 5.06409 5.20509 5.29119 5.35664 5.38347 5.40921 5.43664 5.51579 5.95338 6.16201 6.50235 6.54378 7.17867 7.41383 8.70127 Molecular weight = 239.16amu Principal moments of inertia in cm(-1) A = 0.073958 B = 0.002967 C = 0.002929 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 378.503396 B = 9436.343925 C = 9557.005268 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.124 4.124 3 C -0.083 4.083 4 C -0.122 4.122 5 H 0.089 0.911 6 C -0.134 4.134 7 C -0.193 4.193 8 H 0.153 0.847 9 C 0.531 3.469 10 O -0.595 6.595 11 N -0.711 5.711 12 C 0.129 3.871 13 C -0.094 4.094 14 C 0.007 3.993 15 C -0.618 4.618 16 H 0.059 0.941 17 C -0.044 4.044 18 N -0.940 5.940 19 Si 1.121 2.879 20 H -0.286 1.286 21 H -0.266 1.266 22 H -0.266 1.266 23 H 0.056 0.944 24 H 0.062 0.938 25 H 0.054 0.946 26 H 0.051 0.949 27 H 0.065 0.935 28 H 0.085 0.915 29 H 0.068 0.932 30 H 0.084 0.916 31 H 0.136 0.864 32 H 0.417 0.583 33 H 0.048 0.952 34 H 0.048 0.952 35 H 0.068 0.932 36 H 0.068 0.932 37 H -0.012 1.012 38 H -0.012 1.012 39 H 0.254 0.746 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.654 -6.385 11.840 26.347 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.162 4.162 3 C -0.120 4.120 4 C -0.141 4.141 5 H 0.107 0.893 6 C -0.171 4.171 7 C -0.214 4.214 8 H 0.171 0.829 9 C 0.319 3.681 10 O -0.476 6.476 11 N -0.363 5.363 12 C 0.005 3.995 13 C -0.132 4.132 14 C -0.031 4.031 15 C -0.656 4.656 16 H 0.077 0.923 17 C -0.241 4.241 18 N -0.577 5.577 19 Si 0.941 3.059 20 H -0.212 1.212 21 H -0.191 1.191 22 H -0.191 1.191 23 H 0.075 0.925 24 H 0.081 0.919 25 H 0.073 0.927 26 H 0.070 0.930 27 H 0.083 0.917 28 H 0.104 0.896 29 H 0.086 0.914 30 H 0.103 0.897 31 H 0.154 0.846 32 H 0.254 0.746 33 H 0.066 0.934 34 H 0.066 0.934 35 H 0.087 0.913 36 H 0.087 0.913 37 H 0.007 0.993 38 H 0.007 0.993 39 H 0.063 0.937 Dipole moment (debyes) X Y Z Total from point charges -21.103 -6.150 10.950 24.557 hybrid contribution -0.755 -1.022 0.186 1.284 sum -21.858 -7.171 11.136 25.558 Atomic orbital electron populations 1.21765 0.94881 1.02004 1.02199 1.21506 0.96470 0.96315 1.01891 1.21232 0.89919 0.97722 1.03125 1.22462 0.96054 0.94126 1.01476 0.89250 1.23214 1.02809 1.00746 0.90308 1.22349 0.95915 1.00502 1.02656 0.82916 1.20487 0.85723 0.82447 0.79432 1.90665 1.70285 1.35743 1.50893 1.45920 1.23859 1.11572 1.54910 1.21222 0.85085 0.97927 0.95306 1.21471 0.97001 0.93815 1.00945 1.19132 0.93504 0.96377 0.94098 1.22480 1.10193 0.95426 1.37467 0.92319 1.27563 0.94868 1.09192 0.92480 1.70922 1.41482 1.02426 1.42874 0.82896 0.75906 0.69441 0.77613 1.21193 1.19125 1.19126 0.92489 0.91888 0.92735 0.93031 0.91673 0.89645 0.91364 0.89698 0.84554 0.74592 0.93399 0.93406 0.91294 0.91286 0.99334 0.99320 0.93667 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.58 9.91 71.98 0.71 -0.87 16 2 C -0.12 -1.62 5.89 30.59 0.18 -1.44 16 3 C -0.08 -1.08 5.50 30.60 0.17 -0.92 16 4 C -0.12 -2.28 5.25 -10.79 -0.06 -2.34 16 5 H 0.09 2.20 7.60 -2.39 -0.02 2.18 16 6 C -0.13 -2.15 9.88 30.59 0.30 -1.84 16 7 C -0.19 -3.78 5.91 -11.54 -0.07 -3.85 16 8 H 0.15 2.05 8.14 -2.39 -0.02 2.03 16 9 C 0.53 15.86 7.61 87.66 0.67 16.53 16 10 O -0.59 -23.53 16.26 -3.01 -0.05 -23.58 16 11 N -0.71 -20.21 5.56 -463.06 -2.57 -22.78 16 12 C 0.13 4.69 5.67 86.38 0.49 5.18 16 13 C -0.09 -3.72 5.27 30.59 0.16 -3.56 16 14 C 0.01 0.34 4.28 29.85 0.13 0.47 16 15 C -0.62 -35.17 9.11 25.60 0.23 -34.94 16 16 H 0.06 3.16 7.74 -2.91 -0.02 3.14 16 17 C -0.04 -2.58 5.46 84.65 0.46 -2.12 16 18 N -0.94 -59.49 13.65 21.45 0.29 -59.20 16 19 Si 1.12 49.99 29.90 68.60 2.05 52.04 16 20 H -0.29 -12.89 7.11 99.48 0.71 -12.18 16 21 H -0.27 -10.88 7.11 99.48 0.71 -10.17 16 22 H -0.27 -10.88 7.11 99.48 0.71 -10.17 16 23 H 0.06 0.56 8.14 -2.39 -0.02 0.54 16 24 H 0.06 0.55 8.14 -2.39 -0.02 0.53 16 25 H 0.05 0.57 8.14 -2.38 -0.02 0.55 16 26 H 0.05 0.79 8.14 -2.39 -0.02 0.77 16 27 H 0.06 0.83 8.14 -2.39 -0.02 0.81 16 28 H 0.09 0.81 7.87 -2.39 -0.02 0.79 16 29 H 0.07 0.91 8.14 -2.39 -0.02 0.89 16 30 H 0.08 1.63 8.14 -2.39 -0.02 1.61 16 31 H 0.14 1.32 8.03 -2.39 -0.02 1.30 16 32 H 0.42 8.88 8.47 -92.71 -0.79 8.09 16 33 H 0.05 1.89 8.14 -2.39 -0.02 1.87 16 34 H 0.05 1.88 8.14 -2.39 -0.02 1.86 16 35 H 0.07 2.55 8.14 -2.39 -0.02 2.53 16 36 H 0.07 2.56 8.14 -2.39 -0.02 2.54 16 37 H -0.01 -0.66 8.01 -2.39 -0.02 -0.67 16 38 H -0.01 -0.65 8.01 -2.38 -0.02 -0.67 16 39 H 0.25 16.37 7.22 -92.71 -0.67 15.70 16 Total: -1.00 -72.78 327.10 3.42 -69.36 By element: Atomic # 1 Polarization: 13.55 SS G_CDS: 0.32 Total: 13.87 kcal Atomic # 6 Polarization: -33.08 SS G_CDS: 3.38 Total: -29.70 kcal Atomic # 7 Polarization: -79.71 SS G_CDS: -2.28 Total: -81.99 kcal Atomic # 8 Polarization: -23.53 SS G_CDS: -0.05 Total: -23.58 kcal Atomic # 14 Polarization: 49.99 SS G_CDS: 2.05 Total: 52.04 kcal Total: -72.78 3.42 -69.36 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000360163880.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -9.315 kcal (2) G-P(sol) polarization free energy of solvation -72.776 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -82.091 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.419 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.357 kcal (6) G-S(sol) free energy of system = (1) + (5) -78.672 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds