Wall clock time and date at job start Thu Apr 9 2020 12:09:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53000 * 109.46886 * 2 1 4 4 C 1.52997 * 109.47060 * 180.02562 * 3 2 1 5 5 H 1.09008 * 115.55245 * 29.41643 * 4 3 2 6 6 C 1.52998 * 117.50310 * 243.74949 * 4 3 2 7 7 C 1.52996 * 117.50163 * 175.08923 * 4 3 2 8 8 H 1.09002 * 117.49721 * 359.97438 * 7 4 3 9 9 C 1.50704 * 117.50029 * 214.97809 * 7 4 3 10 10 O 1.21277 * 119.99975 * 0.02562 * 9 7 4 11 11 N 1.34772 * 119.99968 * 179.97438 * 9 7 4 12 12 C 1.46503 * 120.00241 * 0.02562 * 11 9 7 13 13 C 1.46504 * 119.99954 * 180.02562 * 11 9 7 14 14 H 1.08992 * 109.47089 * 0.02562 * 13 11 9 15 15 C 1.53005 * 109.46940 * 120.00447 * 13 11 9 16 16 C 1.50696 * 109.47116 * 240.00003 * 13 11 9 17 17 H 1.07998 * 120.00287 * 0.02562 * 16 13 11 18 18 C 1.37879 * 120.00086 * 180.02562 * 16 13 11 19 19 N 1.31510 * 119.99987 * 180.02562 * 18 16 13 20 20 Si 1.86798 * 119.99745 * 359.97438 * 18 16 13 21 21 H 1.48497 * 109.46988 * 90.00529 * 20 18 16 22 22 H 1.48508 * 109.47112 * 210.00203 * 20 18 16 23 23 H 1.48500 * 109.47531 * 330.00212 * 20 18 16 24 24 H 1.09002 * 109.47508 * 59.99571 * 1 2 3 25 25 H 1.09000 * 109.47437 * 180.02562 * 1 2 3 26 26 H 1.09001 * 109.47109 * 299.99380 * 1 2 3 27 27 H 1.09001 * 109.46652 * 240.00345 * 2 1 3 28 28 H 1.08992 * 109.47514 * 120.00434 * 2 1 3 29 29 H 1.09002 * 109.47398 * 300.00496 * 3 2 1 30 30 H 1.09001 * 109.47194 * 60.00677 * 3 2 1 31 31 H 1.09000 * 117.49561 * 359.97438 * 6 4 3 32 32 H 1.09001 * 117.50251 * 144.99144 * 6 4 3 33 33 H 1.09003 * 109.47066 * 89.99659 * 12 11 9 34 34 H 1.09004 * 109.47074 * 209.99904 * 12 11 9 35 35 H 1.09000 * 109.47147 * 330.00005 * 12 11 9 36 36 H 1.08997 * 109.46764 * 180.02562 * 15 13 11 37 37 H 1.09006 * 109.46881 * 299.99643 * 15 13 11 38 38 H 1.08992 * 109.47399 * 59.99983 * 15 13 11 39 39 H 0.97007 * 120.00022 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 3.5699 1.4426 -0.0006 5 1 4.0399 0.5860 -0.4840 6 6 4.2770 2.0426 1.2163 7 6 4.2763 2.7947 -0.1169 8 1 3.6510 3.6843 -0.1934 9 6 5.5689 2.8403 -0.8905 10 8 6.0109 1.8288 -1.3928 11 7 6.2330 4.0053 -1.0249 12 6 5.6987 5.2273 -0.4186 13 6 7.4892 4.0498 -1.7774 14 1 7.7245 3.0532 -2.1508 15 6 7.3437 5.0143 -2.9562 16 6 8.5990 4.5236 -0.8747 17 1 8.3897 4.7668 0.1564 18 6 9.8817 4.6465 -1.3653 19 7 10.8502 5.0595 -0.5774 20 14 10.2439 4.2251 -3.1487 21 1 10.0726 5.4377 -3.9885 22 1 11.6404 3.7339 -3.2675 23 1 9.3069 3.1685 -3.6079 24 1 -0.3634 0.5139 -0.8899 25 1 -0.3634 -1.0276 0.0005 26 1 -0.3633 0.5137 0.8900 27 1 1.8933 -0.5138 -0.8900 28 1 1.8934 -0.5138 0.8899 29 1 1.6765 1.9564 -0.8899 30 1 1.6767 1.9563 0.8900 31 1 3.6521 2.4378 2.0172 32 1 5.2119 1.5809 1.5336 33 1 6.0895 5.3315 0.5936 34 1 5.9984 6.0895 -1.0144 35 1 4.6108 5.1700 -0.3840 36 1 8.2782 5.0470 -3.5163 37 1 6.5410 4.6716 -3.6092 38 1 7.1082 6.0110 -2.5832 39 1 11.7528 5.1457 -0.9225 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000360309751.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 12:09:24 Heat of formation + Delta-G solvation = -20.885435 kcal Electronic energy + Delta-G solvation = -17363.397799 eV Core-core repulsion = 14692.696792 eV Total energy + Delta-G solvation = -2670.701008 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 239.163 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -39.60908 -37.19897 -35.37963 -33.87927 -32.68150 -30.42574 -27.53465 -26.21348 -25.14358 -24.02936 -22.02365 -20.84936 -20.16667 -18.17932 -17.10479 -16.23605 -15.72194 -15.26410 -14.96508 -14.50709 -13.95036 -13.63096 -13.22067 -12.97575 -12.70972 -12.42379 -12.23111 -12.16422 -12.03552 -11.78439 -11.46463 -11.37651 -11.12945 -11.03381 -10.88940 -10.66996 -10.13178 -10.06679 -9.84547 -9.62827 -9.32393 -8.97821 -8.62744 -7.68998 -6.13715 -4.14115 3.10088 3.23928 3.37443 3.40614 3.72357 4.11448 4.36101 4.63339 4.87497 4.90050 5.06088 5.11031 5.18256 5.24043 5.32668 5.46554 5.63286 5.69586 5.76655 5.78031 5.81069 5.93703 6.01117 6.10937 6.16713 6.18478 6.24334 6.28814 6.35272 6.45069 6.50876 6.85537 7.14563 7.37747 7.64652 8.22331 8.49869 8.86747 8.96433 9.47573 10.99111 Molecular weight = 239.16amu Principal moments of inertia in cm(-1) A = 0.044325 B = 0.005050 C = 0.004952 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 631.540082 B = 5543.459258 C = 5653.237112 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.123 4.123 3 C -0.088 4.088 4 C -0.125 4.125 5 H 0.116 0.884 6 C -0.148 4.148 7 C -0.185 4.185 8 H 0.119 0.881 9 C 0.534 3.466 10 O -0.556 6.556 11 N -0.584 5.584 12 C 0.089 3.911 13 C 0.228 3.772 14 H 0.062 0.938 15 C -0.161 4.161 16 C -0.526 4.526 17 H 0.078 0.922 18 C 0.075 3.925 19 N -0.896 5.896 20 Si 0.883 3.117 21 H -0.277 1.277 22 H -0.294 1.294 23 H -0.263 1.263 24 H 0.053 0.947 25 H 0.052 0.948 26 H 0.052 0.948 27 H 0.063 0.937 28 H 0.063 0.937 29 H 0.065 0.935 30 H 0.063 0.937 31 H 0.099 0.901 32 H 0.099 0.901 33 H 0.053 0.947 34 H 0.071 0.929 35 H 0.055 0.945 36 H 0.050 0.950 37 H 0.033 0.967 38 H 0.056 0.944 39 H 0.266 0.734 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.923 -3.577 1.332 18.325 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.160 4.160 3 C -0.125 4.125 4 C -0.143 4.143 5 H 0.134 0.866 6 C -0.186 4.186 7 C -0.206 4.206 8 H 0.137 0.863 9 C 0.321 3.679 10 O -0.435 6.435 11 N -0.314 5.314 12 C -0.055 4.055 13 C 0.127 3.873 14 H 0.080 0.920 15 C -0.219 4.219 16 C -0.565 4.565 17 H 0.096 0.904 18 C -0.128 4.128 19 N -0.533 5.533 20 Si 0.713 3.287 21 H -0.204 1.204 22 H -0.221 1.221 23 H -0.188 1.188 24 H 0.072 0.928 25 H 0.071 0.929 26 H 0.071 0.929 27 H 0.082 0.918 28 H 0.082 0.918 29 H 0.084 0.916 30 H 0.082 0.918 31 H 0.117 0.883 32 H 0.117 0.883 33 H 0.072 0.928 34 H 0.090 0.910 35 H 0.074 0.926 36 H 0.069 0.931 37 H 0.052 0.948 38 H 0.075 0.925 39 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -17.467 -4.032 1.074 17.958 hybrid contribution 0.460 0.182 -0.854 0.987 sum -17.007 -3.850 0.220 17.439 Atomic orbital electron populations 1.21782 0.96080 1.01455 1.01667 1.21503 0.95392 0.96756 1.02361 1.21217 0.92324 0.97070 1.01913 1.22414 0.94185 0.96191 1.01550 0.86618 1.23049 1.02933 1.02330 0.90268 1.22386 0.98377 0.97825 1.01986 0.86284 1.19505 0.84516 0.83452 0.80381 1.90623 1.69042 1.33902 1.49929 1.47780 1.23921 1.07444 1.52264 1.21599 0.96937 0.88087 0.98861 1.19289 0.81301 0.97265 0.89483 0.92034 1.22460 0.99590 1.01078 0.98797 1.21168 0.91350 1.45542 0.98411 0.90372 1.24870 0.95938 0.94283 0.97694 1.69877 1.01189 1.46434 1.35835 0.86912 0.77143 0.79125 0.85486 1.20391 1.22125 1.18823 0.92815 0.92886 0.92868 0.91811 0.91830 0.91621 0.91823 0.88252 0.88303 0.92819 0.90992 0.92628 0.93148 0.94812 0.92518 0.92455 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.18 9.91 37.16 0.37 -0.81 16 2 C -0.12 -1.13 5.89 -26.73 -0.16 -1.29 16 3 C -0.09 -0.89 5.50 -26.73 -0.15 -1.04 16 4 C -0.12 -1.66 5.25 -90.62 -0.48 -2.14 16 5 H 0.12 1.78 7.60 -51.92 -0.39 1.38 16 6 C -0.15 -1.97 9.88 -26.70 -0.26 -2.23 16 7 C -0.18 -2.79 5.01 -91.74 -0.46 -3.25 16 8 H 0.12 1.50 6.44 -51.93 -0.33 1.17 16 9 C 0.53 11.04 7.46 -10.99 -0.08 10.95 16 10 O -0.56 -13.58 15.59 5.56 0.09 -13.49 16 11 N -0.58 -12.38 2.75 -175.26 -0.48 -12.86 16 12 C 0.09 1.49 9.51 59.85 0.57 2.06 16 13 C 0.23 5.66 2.23 -69.08 -0.15 5.50 16 14 H 0.06 1.70 5.96 -51.93 -0.31 1.39 16 15 C -0.16 -3.54 8.65 37.16 0.32 -3.22 16 16 C -0.53 -14.83 8.95 -34.44 -0.31 -15.14 16 17 H 0.08 2.37 7.89 -52.49 -0.41 1.95 16 18 C 0.07 2.16 5.45 -17.82 -0.10 2.06 16 19 N -0.90 -27.25 13.96 55.43 0.77 -26.48 16 20 Si 0.88 22.15 24.37 -169.99 -4.14 18.01 16 21 H -0.28 -6.62 6.87 56.52 0.39 -6.23 16 22 H -0.29 -7.36 7.11 56.52 0.40 -6.96 16 23 H -0.26 -6.56 6.53 56.52 0.37 -6.19 16 24 H 0.05 0.40 8.14 -51.93 -0.42 -0.02 16 25 H 0.05 0.37 8.14 -51.93 -0.42 -0.05 16 26 H 0.05 0.38 8.14 -51.93 -0.42 -0.04 16 27 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 28 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 29 H 0.07 0.66 8.14 -51.93 -0.42 0.24 16 30 H 0.06 0.58 7.88 -51.93 -0.41 0.17 16 31 H 0.10 1.05 8.03 -51.93 -0.42 0.63 16 32 H 0.10 1.47 8.14 -51.93 -0.42 1.05 16 33 H 0.05 0.91 8.14 -51.93 -0.42 0.49 16 34 H 0.07 1.19 6.43 -51.93 -0.33 0.86 16 35 H 0.06 0.72 5.99 -51.93 -0.31 0.41 16 36 H 0.05 1.15 3.27 -51.93 -0.17 0.98 16 37 H 0.03 0.66 8.14 -51.93 -0.42 0.24 16 38 H 0.06 1.15 6.66 -51.93 -0.35 0.80 16 39 H 0.27 7.58 8.31 -40.82 -0.34 7.24 16 LS Contribution 308.60 15.07 4.65 4.65 Total: -1.00 -32.41 308.60 -6.43 -38.84 By element: Atomic # 1 Polarization: 6.29 SS G_CDS: -6.43 Total: -0.13 kcal Atomic # 6 Polarization: -7.65 SS G_CDS: -0.89 Total: -8.53 kcal Atomic # 7 Polarization: -39.63 SS G_CDS: 0.29 Total: -39.34 kcal Atomic # 8 Polarization: -13.58 SS G_CDS: 0.09 Total: -13.49 kcal Atomic # 14 Polarization: 22.15 SS G_CDS: -4.14 Total: 18.01 kcal Total LS contribution 4.65 Total: 4.65 kcal Total: -32.41 -6.43 -38.84 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000360309751.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 17.951 kcal (2) G-P(sol) polarization free energy of solvation -32.411 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -14.460 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.426 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.836 kcal (6) G-S(sol) free energy of system = (1) + (5) -20.885 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds