Wall clock time and date at job start Thu Apr 9 2020 12:09:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53000 * 109.46886 * 2 1 4 4 C 1.52997 * 109.47060 * 180.02562 * 3 2 1 5 5 H 1.09008 * 115.55245 * 29.41643 * 4 3 2 6 6 C 1.52998 * 117.50310 * 243.74949 * 4 3 2 7 7 C 1.52996 * 117.50163 * 175.08923 * 4 3 2 8 8 H 1.09002 * 117.49721 * 359.97438 * 7 4 3 9 9 C 1.50704 * 117.50029 * 214.97809 * 7 4 3 10 10 O 1.21277 * 119.99975 * 0.02562 * 9 7 4 11 11 N 1.34772 * 119.99968 * 179.97438 * 9 7 4 12 12 C 1.46503 * 120.00241 * 0.02562 * 11 9 7 13 13 C 1.46504 * 119.99954 * 180.02562 * 11 9 7 14 14 H 1.08992 * 109.47089 * 0.02562 * 13 11 9 15 15 C 1.53005 * 109.46940 * 120.00447 * 13 11 9 16 16 C 1.50696 * 109.47116 * 240.00003 * 13 11 9 17 17 H 1.07998 * 120.00287 * 0.02562 * 16 13 11 18 18 C 1.37879 * 120.00086 * 180.02562 * 16 13 11 19 19 N 1.31510 * 119.99987 * 180.02562 * 18 16 13 20 20 Si 1.86798 * 119.99745 * 359.97438 * 18 16 13 21 21 H 1.48497 * 109.46988 * 90.00529 * 20 18 16 22 22 H 1.48508 * 109.47112 * 210.00203 * 20 18 16 23 23 H 1.48500 * 109.47531 * 330.00212 * 20 18 16 24 24 H 1.09002 * 109.47508 * 59.99571 * 1 2 3 25 25 H 1.09000 * 109.47437 * 180.02562 * 1 2 3 26 26 H 1.09001 * 109.47109 * 299.99380 * 1 2 3 27 27 H 1.09001 * 109.46652 * 240.00345 * 2 1 3 28 28 H 1.08992 * 109.47514 * 120.00434 * 2 1 3 29 29 H 1.09002 * 109.47398 * 300.00496 * 3 2 1 30 30 H 1.09001 * 109.47194 * 60.00677 * 3 2 1 31 31 H 1.09000 * 117.49561 * 359.97438 * 6 4 3 32 32 H 1.09001 * 117.50251 * 144.99144 * 6 4 3 33 33 H 1.09003 * 109.47066 * 89.99659 * 12 11 9 34 34 H 1.09004 * 109.47074 * 209.99904 * 12 11 9 35 35 H 1.09000 * 109.47147 * 330.00005 * 12 11 9 36 36 H 1.08997 * 109.46764 * 180.02562 * 15 13 11 37 37 H 1.09006 * 109.46881 * 299.99643 * 15 13 11 38 38 H 1.08992 * 109.47399 * 59.99983 * 15 13 11 39 39 H 0.97007 * 120.00022 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 3.5699 1.4426 -0.0006 5 1 4.0399 0.5860 -0.4840 6 6 4.2770 2.0426 1.2163 7 6 4.2763 2.7947 -0.1169 8 1 3.6510 3.6843 -0.1934 9 6 5.5689 2.8403 -0.8905 10 8 6.0109 1.8288 -1.3928 11 7 6.2330 4.0053 -1.0249 12 6 5.6987 5.2273 -0.4186 13 6 7.4892 4.0498 -1.7774 14 1 7.7245 3.0532 -2.1508 15 6 7.3437 5.0143 -2.9562 16 6 8.5990 4.5236 -0.8747 17 1 8.3897 4.7668 0.1564 18 6 9.8817 4.6465 -1.3653 19 7 10.8502 5.0595 -0.5774 20 14 10.2439 4.2251 -3.1487 21 1 10.0726 5.4377 -3.9885 22 1 11.6404 3.7339 -3.2675 23 1 9.3069 3.1685 -3.6079 24 1 -0.3634 0.5139 -0.8899 25 1 -0.3634 -1.0276 0.0005 26 1 -0.3633 0.5137 0.8900 27 1 1.8933 -0.5138 -0.8900 28 1 1.8934 -0.5138 0.8899 29 1 1.6765 1.9564 -0.8899 30 1 1.6767 1.9563 0.8900 31 1 3.6521 2.4378 2.0172 32 1 5.2119 1.5809 1.5336 33 1 6.0895 5.3315 0.5936 34 1 5.9984 6.0895 -1.0144 35 1 4.6108 5.1700 -0.3840 36 1 8.2782 5.0470 -3.5163 37 1 6.5410 4.6716 -3.6092 38 1 7.1082 6.0110 -2.5832 39 1 11.7528 5.1457 -0.9225 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000360309751.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 12:09:23 Heat of formation + Delta-G solvation = -41.495362 kcal Electronic energy + Delta-G solvation = -17364.291513 eV Core-core repulsion = 14692.696792 eV Total energy + Delta-G solvation = -2671.594721 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 239.163 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -41.12229 -38.46073 -37.08834 -34.89367 -34.57564 -32.31189 -28.35754 -27.70054 -27.17162 -25.49059 -22.91029 -22.24402 -21.34130 -19.73610 -18.99928 -17.98697 -17.46841 -16.56836 -16.16868 -15.93183 -15.22432 -15.13472 -14.86003 -14.18987 -14.09746 -13.95095 -13.82227 -13.49566 -13.19639 -13.11591 -13.02385 -12.76560 -12.55426 -12.17799 -12.08054 -11.90920 -11.64357 -11.59697 -11.38987 -11.11194 -10.87547 -10.82062 -10.61184 -9.41661 -8.38028 -6.42772 1.23339 1.33137 1.42078 1.59968 2.21999 2.25135 2.91385 2.97202 3.56359 3.78773 3.87436 4.09634 4.22615 4.31688 4.39288 4.43176 4.43534 4.58182 4.58589 4.67103 4.74562 4.84643 4.92257 4.95755 4.97288 5.02678 5.06493 5.11017 5.24174 5.31247 5.40511 5.44537 5.46381 5.55460 5.70651 6.17996 6.58844 6.73047 7.18792 7.36580 8.78169 Molecular weight = 239.16amu Principal moments of inertia in cm(-1) A = 0.044325 B = 0.005050 C = 0.004952 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 631.540082 B = 5543.459258 C = 5653.237112 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.124 4.124 3 C -0.080 4.080 4 C -0.117 4.117 5 H 0.086 0.914 6 C -0.139 4.139 7 C -0.191 4.191 8 H 0.155 0.845 9 C 0.522 3.478 10 O -0.606 6.606 11 N -0.593 5.593 12 C 0.085 3.915 13 C 0.229 3.771 14 H 0.027 0.973 15 C -0.153 4.153 16 C -0.528 4.528 17 H 0.043 0.957 18 C 0.023 3.977 19 N -0.939 5.939 20 Si 0.942 3.058 21 H -0.251 1.251 22 H -0.294 1.294 23 H -0.265 1.265 24 H 0.055 0.945 25 H 0.056 0.944 26 H 0.062 0.938 27 H 0.051 0.949 28 H 0.062 0.938 29 H 0.071 0.929 30 H 0.086 0.914 31 H 0.138 0.862 32 H 0.073 0.927 33 H 0.045 0.955 34 H 0.074 0.926 35 H 0.102 0.898 36 H 0.042 0.958 37 H 0.055 0.945 38 H 0.073 0.927 39 H 0.269 0.731 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.641 -2.759 0.923 20.845 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.162 4.162 3 C -0.117 4.117 4 C -0.136 4.136 5 H 0.104 0.896 6 C -0.176 4.176 7 C -0.211 4.211 8 H 0.173 0.827 9 C 0.312 3.688 10 O -0.489 6.489 11 N -0.322 5.322 12 C -0.057 4.057 13 C 0.126 3.874 14 H 0.045 0.955 15 C -0.211 4.211 16 C -0.566 4.566 17 H 0.062 0.938 18 C -0.176 4.176 19 N -0.578 5.578 20 Si 0.769 3.231 21 H -0.176 1.176 22 H -0.221 1.221 23 H -0.190 1.190 24 H 0.074 0.926 25 H 0.076 0.924 26 H 0.081 0.919 27 H 0.070 0.930 28 H 0.081 0.919 29 H 0.089 0.911 30 H 0.104 0.896 31 H 0.156 0.844 32 H 0.092 0.908 33 H 0.064 0.936 34 H 0.093 0.907 35 H 0.120 0.880 36 H 0.061 0.939 37 H 0.074 0.926 38 H 0.092 0.908 39 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -20.219 -3.182 0.678 20.479 hybrid contribution 1.309 -0.125 -0.621 1.454 sum -18.910 -3.307 0.058 19.197 Atomic orbital electron populations 1.21753 0.94619 1.02018 1.02272 1.21507 0.96628 0.96233 1.01816 1.21220 0.89400 0.97820 1.03232 1.22456 0.96220 0.94095 1.00853 0.89577 1.23169 1.02474 1.01305 0.90656 1.22387 0.96031 1.00229 1.02460 0.82747 1.20527 0.86020 0.82366 0.79930 1.90590 1.70763 1.35543 1.52001 1.47890 1.22829 1.09317 1.52189 1.21842 0.99641 0.86224 0.97972 1.18969 0.82250 0.95913 0.90299 0.95503 1.22309 1.00043 1.01098 0.97658 1.21359 0.92857 1.44859 0.97523 0.93831 1.25658 0.95757 0.94213 1.01984 1.70001 1.01774 1.48095 1.37957 0.85959 0.76611 0.79738 0.80772 1.17570 1.22135 1.19023 0.92555 0.92449 0.91878 0.93044 0.91883 0.91061 0.89587 0.84372 0.90831 0.93640 0.90721 0.87951 0.93922 0.92563 0.90825 0.92181 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.91 9.91 71.98 0.71 -1.19 16 2 C -0.12 -2.04 5.89 30.59 0.18 -1.86 16 3 C -0.08 -1.37 5.50 30.59 0.17 -1.20 16 4 C -0.12 -2.94 5.25 -10.80 -0.06 -3.00 16 5 H 0.09 2.70 7.60 -2.38 -0.02 2.68 16 6 C -0.14 -3.40 9.88 30.62 0.30 -3.10 16 7 C -0.19 -5.33 5.01 -11.52 -0.06 -5.39 16 8 H 0.16 3.19 6.44 -2.39 -0.02 3.17 16 9 C 0.52 21.51 7.46 87.66 0.65 22.16 16 10 O -0.61 -30.62 15.59 -3.02 -0.05 -30.66 16 11 N -0.59 -24.87 2.75 -826.78 -2.28 -27.15 16 12 C 0.09 2.69 9.51 127.77 1.21 3.90 16 13 C 0.23 11.42 2.23 44.24 0.10 11.52 16 14 H 0.03 1.53 5.96 -2.39 -0.01 1.51 16 15 C -0.15 -6.47 8.65 71.98 0.62 -5.85 16 16 C -0.53 -30.47 8.95 25.60 0.23 -30.24 16 17 H 0.04 2.74 7.89 -2.91 -0.02 2.72 16 18 C 0.02 1.33 5.45 84.66 0.46 1.79 16 19 N -0.94 -58.43 13.96 21.45 0.30 -58.13 16 20 Si 0.94 45.95 24.37 68.60 1.67 47.62 16 21 H -0.25 -11.10 6.87 99.48 0.68 -10.42 16 22 H -0.29 -14.22 7.11 99.48 0.71 -13.51 16 23 H -0.27 -12.93 6.53 99.48 0.65 -12.28 16 24 H 0.06 0.69 8.14 -2.39 -0.02 0.67 16 25 H 0.06 0.68 8.14 -2.39 -0.02 0.66 16 26 H 0.06 0.69 8.14 -2.39 -0.02 0.67 16 27 H 0.05 0.96 8.14 -2.39 -0.02 0.94 16 28 H 0.06 1.03 8.14 -2.39 -0.02 1.01 16 29 H 0.07 1.18 8.14 -2.39 -0.02 1.16 16 30 H 0.09 1.14 7.88 -2.39 -0.02 1.12 16 31 H 0.14 2.33 8.03 -2.39 -0.02 2.31 16 32 H 0.07 2.19 8.14 -2.39 -0.02 2.17 16 33 H 0.04 1.50 8.14 -2.39 -0.02 1.48 16 34 H 0.07 2.30 6.43 -2.38 -0.02 2.29 16 35 H 0.10 2.24 5.99 -2.39 -0.01 2.23 16 36 H 0.04 1.86 3.27 -2.39 -0.01 1.85 16 37 H 0.06 2.10 8.14 -2.38 -0.02 2.08 16 38 H 0.07 2.82 6.66 -2.39 -0.02 2.81 16 39 H 0.27 15.65 8.31 -92.70 -0.77 14.88 16 Total: -1.00 -73.67 308.60 5.11 -68.56 By element: Atomic # 1 Polarization: 11.28 SS G_CDS: 0.93 Total: 12.21 kcal Atomic # 6 Polarization: -16.98 SS G_CDS: 4.53 Total: -12.45 kcal Atomic # 7 Polarization: -83.30 SS G_CDS: -1.98 Total: -85.28 kcal Atomic # 8 Polarization: -30.62 SS G_CDS: -0.05 Total: -30.66 kcal Atomic # 14 Polarization: 45.95 SS G_CDS: 1.67 Total: 47.62 kcal Total: -73.67 5.11 -68.56 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000360309751.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 27.064 kcal (2) G-P(sol) polarization free energy of solvation -73.670 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -46.606 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.111 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.559 kcal (6) G-S(sol) free energy of system = (1) + (5) -41.495 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds