Wall clock time and date at job start Thu Apr 9 2020 12:09:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.52990 * 109.47313 * 2 1 4 4 C 1.53000 * 109.46711 * 120.00263 * 2 1 3 5 5 N 1.46507 * 109.46992 * 174.04740 * 4 2 1 6 6 C 1.34772 * 119.99458 * 276.16906 * 5 4 2 7 7 O 1.21284 * 120.00715 * 4.74656 * 6 5 4 8 8 C 1.50704 * 119.99470 * 184.74898 * 6 5 4 9 9 C 1.53002 * 109.46822 * 184.85636 * 8 6 5 10 10 C 1.50699 * 109.47135 * 180.02562 * 9 8 6 11 11 H 1.08000 * 120.00213 * 0.02562 * 10 9 8 12 12 C 1.37880 * 120.00436 * 180.02562 * 10 9 8 13 13 N 1.31514 * 120.00570 * 180.02562 * 12 10 9 14 14 Si 1.86799 * 119.99628 * 359.97438 * 12 10 9 15 15 H 1.48500 * 109.46821 * 90.00313 * 14 12 10 16 16 H 1.48502 * 109.47251 * 210.00011 * 14 12 10 17 17 H 1.48504 * 109.47511 * 330.00286 * 14 12 10 18 18 C 1.46496 * 120.00146 * 95.89049 * 5 4 2 19 19 C 1.53000 * 117.49628 * 64.83315 * 18 5 4 20 20 C 1.52994 * 60.00243 * 252.50894 * 19 18 5 21 21 H 1.08991 * 109.47160 * 300.00056 * 1 2 3 22 22 H 1.08998 * 109.46784 * 60.00050 * 1 2 3 23 23 H 1.09003 * 109.47237 * 179.97438 * 1 2 3 24 24 H 1.09004 * 109.47002 * 239.99644 * 2 1 3 25 25 H 1.09005 * 109.47127 * 64.07028 * 3 2 1 26 26 H 1.09003 * 109.47586 * 184.06617 * 3 2 1 27 27 H 1.09001 * 109.47634 * 304.07190 * 3 2 1 28 28 H 1.09000 * 109.47726 * 54.04661 * 4 2 1 29 29 H 1.09000 * 109.46953 * 294.04232 * 4 2 1 30 30 H 1.08995 * 109.47478 * 304.85497 * 8 6 5 31 31 H 1.09003 * 109.47076 * 64.86012 * 8 6 5 32 32 H 1.09001 * 109.47285 * 299.99555 * 9 8 6 33 33 H 1.08999 * 109.47819 * 59.99991 * 9 8 6 34 34 H 0.96996 * 120.00175 * 179.97438 * 13 12 10 35 35 H 1.08994 * 115.55201 * 210.54036 * 18 5 4 36 36 H 1.09003 * 117.50346 * 0.02562 * 19 18 5 37 37 H 1.09005 * 117.49534 * 145.01882 * 19 18 5 38 38 H 1.09002 * 117.50210 * 252.50920 * 20 19 18 39 39 H 1.09005 * 117.51743 * 107.47780 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 6 2.0399 -0.7213 1.2492 5 7 3.4980 -0.8467 1.1798 6 6 4.0548 -1.8650 0.4948 7 8 3.3531 -2.6276 -0.1353 8 6 5.5496 -2.0561 0.5117 9 6 5.9285 -3.1978 -0.4338 10 6 7.4231 -3.3893 -0.4165 11 1 8.0410 -2.7601 0.2069 12 6 8.0019 -4.3680 -1.1964 13 7 9.3063 -4.5355 -1.1809 14 14 6.9332 -5.4569 -2.2741 15 1 6.7790 -4.8307 -3.6118 16 1 7.5737 -6.7886 -2.4218 17 1 5.5973 -5.6171 -1.6456 18 6 4.3506 0.1383 1.8499 19 6 4.2821 0.2095 3.3767 20 6 3.6614 1.3227 2.5304 21 1 -0.3633 0.5138 0.8899 22 1 -0.3633 0.5138 -0.8900 23 1 -0.3634 -1.0277 -0.0005 24 1 1.8934 -0.5139 -0.8900 25 1 1.7375 1.9348 0.9242 26 1 3.1277 1.4433 -0.0729 27 1 1.6184 1.9770 -0.8512 28 1 1.5922 -1.7136 1.3042 29 1 1.7663 -0.1496 2.1360 30 1 6.0371 -1.1374 0.1856 31 1 5.8733 -2.2998 1.5236 32 1 5.4410 -4.1166 -0.1077 33 1 5.6048 -2.9542 -1.4457 34 1 9.7133 -5.2243 -1.7293 35 1 5.3171 0.3205 1.3801 36 1 3.6030 -0.4768 3.8827 37 1 5.2038 0.4385 3.9117 38 1 4.1746 2.2841 2.5086 39 1 2.5735 1.3693 2.4791 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000360361207.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 12:09:44 Heat of formation + Delta-G solvation = -46.511960 kcal Electronic energy + Delta-G solvation = -17634.991334 eV Core-core repulsion = 14963.179077 eV Total energy + Delta-G solvation = -2671.812257 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 239.163 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -41.28649 -38.67476 -36.53319 -35.52423 -33.78796 -33.17669 -28.88380 -28.06211 -26.68938 -23.75515 -23.18122 -22.74929 -21.39766 -19.64363 -19.06117 -17.97655 -17.37331 -16.77316 -16.26449 -15.66526 -15.62300 -15.15554 -14.91517 -14.71389 -14.22538 -14.00676 -13.55467 -13.21905 -13.10305 -12.94812 -12.63858 -12.46396 -12.27949 -12.15313 -12.03428 -11.98172 -11.79587 -11.65814 -11.50007 -11.40746 -11.29642 -10.79438 -10.63151 -9.42179 -8.32952 -6.35608 1.30844 1.32896 1.48415 1.60457 1.96707 2.33483 2.96825 3.02565 3.60311 3.84605 3.90381 3.96969 4.04912 4.16498 4.22191 4.34555 4.45602 4.45789 4.65350 4.77043 4.80100 4.84324 4.86553 4.99750 5.04323 5.05281 5.13687 5.24345 5.27782 5.30376 5.38441 5.41768 5.45434 5.58964 5.67186 6.22167 6.40313 6.70073 7.22075 7.29717 8.82769 Molecular weight = 239.16amu Principal moments of inertia in cm(-1) A = 0.029195 B = 0.006020 C = 0.005285 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 958.850890 B = 4650.121140 C = 5296.678819 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.113 4.113 3 C -0.139 4.139 4 C 0.117 3.883 5 N -0.581 5.581 6 C 0.514 3.486 7 O -0.582 6.582 8 C -0.111 4.111 9 C 0.006 3.994 10 C -0.528 4.528 11 H 0.051 0.949 12 C 0.016 3.984 13 N -0.942 5.942 14 Si 0.936 3.064 15 H -0.268 1.268 16 H -0.276 1.276 17 H -0.264 1.264 18 C 0.042 3.958 19 C -0.189 4.189 20 C -0.160 4.160 21 H 0.076 0.924 22 H 0.061 0.939 23 H 0.045 0.955 24 H 0.036 0.964 25 H 0.078 0.922 26 H 0.047 0.953 27 H 0.055 0.945 28 H 0.055 0.945 29 H 0.108 0.892 30 H 0.098 0.902 31 H 0.097 0.903 32 H 0.008 0.992 33 H 0.006 0.994 34 H 0.268 0.732 35 H 0.130 0.870 36 H 0.092 0.908 37 H 0.113 0.887 38 H 0.123 0.877 39 H 0.113 0.887 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.430 15.282 8.451 23.978 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.133 4.133 3 C -0.196 4.196 4 C -0.005 4.005 5 N -0.311 5.311 6 C 0.305 3.695 7 O -0.462 6.462 8 C -0.150 4.150 9 C -0.032 4.032 10 C -0.566 4.566 11 H 0.069 0.931 12 C -0.182 4.182 13 N -0.583 5.583 14 Si 0.760 3.240 15 H -0.193 1.193 16 H -0.201 1.201 17 H -0.189 1.189 18 C -0.062 4.062 19 C -0.227 4.227 20 C -0.197 4.197 21 H 0.095 0.905 22 H 0.080 0.920 23 H 0.064 0.936 24 H 0.055 0.945 25 H 0.097 0.903 26 H 0.066 0.934 27 H 0.074 0.926 28 H 0.074 0.926 29 H 0.126 0.874 30 H 0.116 0.884 31 H 0.115 0.885 32 H 0.026 0.974 33 H 0.024 0.976 34 H 0.077 0.923 35 H 0.148 0.852 36 H 0.110 0.890 37 H 0.132 0.868 38 H 0.141 0.859 39 H 0.131 0.869 Dipole moment (debyes) X Y Z Total from point charges -16.667 14.775 8.053 23.684 hybrid contribution 0.130 -0.986 -0.756 1.250 sum -16.537 13.788 7.297 22.734 Atomic orbital electron populations 1.21728 0.93173 1.01707 1.03008 1.21447 0.97077 0.97363 0.97380 1.21899 1.00786 0.94239 1.02679 1.21658 0.78887 1.00759 0.99217 1.47475 1.06688 1.25711 1.51222 1.21157 0.91431 0.79531 0.77424 1.90626 1.65114 1.46653 1.43854 1.21474 0.90108 1.01088 1.02366 1.19220 0.94381 0.94626 0.94947 1.21398 0.91831 1.17626 1.25717 0.93102 1.25762 0.95923 0.98489 0.97980 1.70013 1.11186 1.34972 1.42103 0.85869 0.79627 0.78725 0.79743 1.19320 1.20116 1.18867 1.22009 0.96675 0.94256 0.93225 1.23492 1.04196 1.02191 0.92871 1.23614 1.01545 0.93758 1.00818 0.90505 0.91962 0.93561 0.94521 0.90275 0.93370 0.92640 0.92615 0.87447 0.88406 0.88491 0.97381 0.97558 0.92324 0.85220 0.88953 0.86822 0.85881 0.86945 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.42 9.19 71.98 0.66 -1.76 16 2 C -0.11 -2.54 3.07 -10.80 -0.03 -2.57 16 3 C -0.14 -2.43 7.70 71.98 0.55 -1.88 16 4 C 0.12 2.74 4.46 86.38 0.39 3.13 16 5 N -0.58 -16.07 2.57 -797.83 -2.05 -18.12 16 6 C 0.51 19.63 7.61 87.66 0.67 20.29 16 7 O -0.58 -27.02 15.54 -3.04 -0.05 -27.07 16 8 C -0.11 -4.46 4.49 29.85 0.13 -4.32 16 9 C 0.01 0.32 3.34 29.85 0.10 0.42 16 10 C -0.53 -31.08 9.66 25.60 0.25 -30.84 16 11 H 0.05 3.14 7.99 -2.91 -0.02 3.11 16 12 C 0.02 0.98 5.47 84.66 0.46 1.45 16 13 N -0.94 -59.56 13.96 21.45 0.30 -59.26 16 14 Si 0.94 47.66 27.47 68.60 1.88 49.55 16 15 H -0.27 -13.19 7.11 99.48 0.71 -12.48 16 16 H -0.28 -13.40 7.11 99.48 0.71 -12.69 16 17 H -0.26 -13.52 6.54 99.48 0.65 -12.87 16 18 C 0.04 0.87 4.92 44.99 0.22 1.10 16 19 C -0.19 -3.04 10.34 30.59 0.32 -2.73 16 20 C -0.16 -2.10 8.09 30.59 0.25 -1.85 16 21 H 0.08 0.98 8.14 -2.39 -0.02 0.96 16 22 H 0.06 1.01 8.14 -2.39 -0.02 0.99 16 23 H 0.05 0.89 8.14 -2.39 -0.02 0.87 16 24 H 0.04 1.13 7.96 -2.39 -0.02 1.11 16 25 H 0.08 0.98 6.39 -2.38 -0.02 0.97 16 26 H 0.05 0.96 6.70 -2.39 -0.02 0.95 16 27 H 0.05 0.92 8.14 -2.39 -0.02 0.90 16 28 H 0.06 1.56 7.69 -2.39 -0.02 1.54 16 29 H 0.11 1.79 5.90 -2.39 -0.01 1.77 16 30 H 0.10 3.58 7.16 -2.39 -0.02 3.56 16 31 H 0.10 3.67 8.14 -2.39 -0.02 3.65 16 32 H 0.01 0.43 7.11 -2.39 -0.02 0.41 16 33 H 0.01 0.32 7.57 -2.39 -0.02 0.31 16 34 H 0.27 15.80 8.31 -92.71 -0.77 15.03 16 35 H 0.13 2.74 6.81 -2.39 -0.02 2.73 16 36 H 0.09 1.57 8.14 -2.39 -0.02 1.55 16 37 H 0.11 1.60 8.14 -2.38 -0.02 1.58 16 38 H 0.12 1.18 8.14 -2.39 -0.02 1.16 16 39 H 0.11 1.28 4.38 -2.38 -0.01 1.27 16 Total: -1.00 -73.09 307.72 5.01 -68.08 By element: Atomic # 1 Polarization: 5.41 SS G_CDS: 0.95 Total: 6.37 kcal Atomic # 6 Polarization: -23.52 SS G_CDS: 3.96 Total: -19.56 kcal Atomic # 7 Polarization: -75.62 SS G_CDS: -1.75 Total: -77.37 kcal Atomic # 8 Polarization: -27.02 SS G_CDS: -0.05 Total: -27.07 kcal Atomic # 14 Polarization: 47.66 SS G_CDS: 1.88 Total: 49.55 kcal Total: -73.09 5.01 -68.08 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000360361207.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 21.571 kcal (2) G-P(sol) polarization free energy of solvation -73.089 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -51.517 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.006 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.083 kcal (6) G-S(sol) free energy of system = (1) + (5) -46.512 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds