Wall clock time and date at job start Thu Apr 9 2020 12:09:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.52995 * 109.46964 * 2 1 4 4 C 1.53003 * 109.46964 * 179.97438 * 3 2 1 5 5 H 1.08995 * 115.55052 * 29.33301 * 4 3 2 6 6 C 1.53002 * 117.52049 * 243.62611 * 4 3 2 7 7 C 1.52992 * 60.00298 * 252.52263 * 6 4 3 8 8 H 1.09003 * 117.52074 * 107.48198 * 7 6 4 9 9 C 1.50699 * 117.49939 * 252.51110 * 7 6 4 10 10 O 1.21299 * 120.00115 * 71.06321 * 9 7 6 11 11 N 1.34777 * 120.00267 * 251.06348 * 9 7 6 12 12 C 1.37104 * 119.99713 * 4.10505 * 11 9 7 13 13 H 1.07995 * 119.99859 * 41.48632 * 12 11 9 14 14 C 1.38944 * 119.99629 * 221.48728 * 12 11 9 15 15 N 1.31407 * 120.00536 * 7.55743 * 14 12 11 16 16 Si 1.86803 * 119.99834 * 187.55890 * 14 12 11 17 17 H 1.48500 * 109.46948 * 89.99968 * 16 14 12 18 18 H 1.48499 * 109.47119 * 209.99859 * 16 14 12 19 19 H 1.48502 * 109.47280 * 330.00036 * 16 14 12 20 20 C 1.46497 * 120.00223 * 184.37470 * 11 9 7 21 21 C 1.52999 * 109.47608 * 269.72711 * 20 11 9 22 22 C 1.52993 * 109.47388 * 180.02562 * 21 20 11 23 23 H 1.08996 * 109.47362 * 59.99581 * 1 2 3 24 24 H 1.08996 * 109.47092 * 180.02562 * 1 2 3 25 25 H 1.08999 * 109.47112 * 299.99820 * 1 2 3 26 26 H 1.08999 * 109.47112 * 240.00180 * 2 1 3 27 27 H 1.08997 * 109.47060 * 119.99698 * 2 1 3 28 28 H 1.09005 * 109.47461 * 60.00275 * 3 2 1 29 29 H 1.08997 * 109.47505 * 299.99831 * 3 2 1 30 30 H 1.08998 * 117.49802 * 145.03035 * 6 4 3 31 31 H 1.09003 * 117.49517 * 0.02562 * 6 4 3 32 32 H 0.97000 * 120.00829 * 174.99487 * 15 14 12 33 33 H 1.08997 * 109.46943 * 29.72723 * 20 11 9 34 34 H 1.08999 * 109.47025 * 149.72530 * 20 11 9 35 35 H 1.09004 * 109.47059 * 300.00674 * 21 20 11 36 36 H 1.08999 * 109.47076 * 59.99849 * 21 20 11 37 37 H 1.08991 * 109.47243 * 60.00230 * 22 21 20 38 38 H 1.09006 * 109.46969 * 180.02562 * 22 21 20 39 39 H 1.09010 * 109.47229 * 299.99649 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5700 1.4425 0.0006 5 1 4.0403 0.5851 -0.4808 6 6 4.2765 2.0454 1.2165 7 6 4.2765 2.7945 -0.1175 8 1 3.6513 3.6839 -0.1957 9 6 5.5693 2.8388 -0.8906 10 8 5.9892 1.8358 -1.4282 11 7 6.2590 3.9929 -0.9848 12 6 5.8295 5.1053 -0.3082 13 1 5.4624 5.0138 0.7033 14 6 5.8664 6.3502 -0.9241 15 7 6.1708 6.4440 -2.1990 16 14 5.4835 7.8910 0.0604 17 1 6.7364 8.4234 0.6536 18 1 4.8856 8.9142 -0.8344 19 1 4.5241 7.5600 1.1445 20 6 7.4644 4.0603 -1.8147 21 6 8.6875 3.7032 -0.9677 22 6 9.9463 3.7742 -1.8344 23 1 -0.3634 0.5139 -0.8899 24 1 -0.3633 -1.0276 0.0005 25 1 -0.3633 0.5138 0.8900 26 1 1.8934 -0.5138 -0.8900 27 1 1.8933 -0.5138 0.8900 28 1 1.6767 1.9564 0.8900 29 1 1.6767 1.9563 -0.8899 30 1 5.2115 1.5846 1.5350 31 1 3.6512 2.4419 2.0165 32 1 6.1260 7.3034 -2.6465 33 1 7.3763 3.3551 -2.6411 34 1 7.5778 5.0700 -2.2092 35 1 8.7755 4.4084 -0.1412 36 1 8.5740 2.6935 -0.5732 37 1 10.0596 4.7841 -2.2284 38 1 10.8177 3.5194 -1.2310 39 1 9.8586 3.0692 -2.6611 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000361609130.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 12:09:57 Heat of formation + Delta-G solvation = -39.168549 kcal Electronic energy + Delta-G solvation = -17467.732701 eV Core-core repulsion = 14796.238878 eV Total energy + Delta-G solvation = -2671.493823 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 239.163 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -38.95140 -36.76926 -34.91169 -33.51205 -32.67865 -31.15365 -27.32542 -25.95913 -24.73861 -22.47603 -21.68612 -20.54051 -19.89239 -18.89340 -16.88133 -15.91066 -15.04052 -14.78572 -14.46439 -14.16831 -13.76545 -13.51971 -13.31155 -12.96518 -12.47801 -12.32405 -11.92408 -11.67491 -11.33382 -11.26188 -11.22198 -11.07041 -10.93635 -10.71648 -10.61981 -10.59491 -10.28735 -10.23053 -9.68792 -9.56379 -9.33373 -9.01538 -8.38371 -7.40232 -6.28761 -4.11425 3.10976 3.20359 3.22207 3.73477 4.10304 4.51214 4.71734 5.01081 5.14023 5.18737 5.26614 5.57109 5.61447 5.70509 5.79971 5.86407 5.92242 5.94195 6.00646 6.09152 6.15599 6.18207 6.23608 6.43667 6.45652 6.46315 6.59124 6.63435 6.74678 6.78598 6.90480 6.92979 7.21903 7.38444 7.66755 8.05035 8.45763 9.10738 9.57878 10.01003 10.69217 Molecular weight = 239.16amu Principal moments of inertia in cm(-1) A = 0.019941 B = 0.007078 C = 0.005638 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1403.793874 B = 3954.963685 C = 4964.826901 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.121 4.121 3 C -0.087 4.087 4 C -0.136 4.136 5 H 0.109 0.891 6 C -0.160 4.160 7 C -0.145 4.145 8 H 0.120 0.880 9 C 0.498 3.502 10 O -0.607 6.607 11 N -0.437 5.437 12 C -0.326 4.326 13 H 0.087 0.913 14 C 0.041 3.959 15 N -0.871 5.871 16 Si 0.919 3.081 17 H -0.277 1.277 18 H -0.283 1.283 19 H -0.269 1.269 20 C 0.106 3.894 21 C -0.132 4.132 22 C -0.142 4.142 23 H 0.053 0.947 24 H 0.050 0.950 25 H 0.051 0.949 26 H 0.061 0.939 27 H 0.060 0.940 28 H 0.060 0.940 29 H 0.064 0.936 30 H 0.088 0.912 31 H 0.091 0.909 32 H 0.270 0.730 33 H 0.048 0.952 34 H 0.119 0.881 35 H 0.057 0.943 36 H 0.048 0.952 37 H 0.052 0.948 38 H 0.043 0.957 39 H 0.048 0.952 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.607 -4.524 4.406 7.817 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.159 4.159 3 C -0.124 4.124 4 C -0.154 4.154 5 H 0.127 0.873 6 C -0.197 4.197 7 C -0.166 4.166 8 H 0.138 0.862 9 C 0.287 3.713 10 O -0.494 6.494 11 N -0.154 5.154 12 C -0.455 4.455 13 H 0.105 0.895 14 C -0.163 4.163 15 N -0.509 5.509 16 Si 0.745 3.255 17 H -0.203 1.203 18 H -0.208 1.208 19 H -0.194 1.194 20 C -0.017 4.017 21 C -0.171 4.171 22 C -0.200 4.200 23 H 0.072 0.928 24 H 0.069 0.931 25 H 0.071 0.929 26 H 0.080 0.920 27 H 0.079 0.921 28 H 0.079 0.921 29 H 0.083 0.917 30 H 0.107 0.893 31 H 0.110 0.890 32 H 0.081 0.919 33 H 0.067 0.933 34 H 0.136 0.864 35 H 0.075 0.925 36 H 0.067 0.933 37 H 0.071 0.929 38 H 0.062 0.938 39 H 0.067 0.933 Dipole moment (debyes) X Y Z Total from point charges -4.295 -4.805 3.996 7.583 hybrid contribution -0.150 1.027 0.478 1.143 sum -4.445 -3.777 4.474 7.351 Atomic orbital electron populations 1.21784 0.96318 1.01158 1.01673 1.21500 0.95158 0.97158 1.02046 1.21184 0.92935 0.96478 1.01807 1.22337 0.93750 0.97480 1.01848 0.87257 1.22928 1.02193 1.03688 0.90929 1.22110 0.98621 0.96302 0.99590 0.86244 1.19620 0.84588 0.84246 0.82819 1.90500 1.71235 1.35409 1.52226 1.43374 1.21084 1.08638 1.42311 1.19464 1.43422 0.84849 0.97742 0.89499 1.25502 0.95905 0.99589 0.95320 1.69642 1.46069 1.26041 1.09145 0.86062 0.78792 0.81178 0.79419 1.20269 1.20849 1.19375 1.21661 0.82902 1.04728 0.92424 1.21813 0.95327 1.00705 0.99238 1.21651 0.97299 1.01333 0.99715 0.92811 0.93109 0.92943 0.91975 0.92091 0.92087 0.91707 0.89331 0.89047 0.91946 0.93343 0.86367 0.92453 0.93348 0.92937 0.93794 0.93258 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.57 9.91 37.16 0.37 -1.20 16 2 C -0.12 -1.48 5.89 -26.73 -0.16 -1.64 16 3 C -0.09 -1.24 5.50 -26.73 -0.15 -1.38 16 4 C -0.14 -2.40 5.25 -90.62 -0.48 -2.87 16 5 H 0.11 2.10 7.60 -51.93 -0.39 1.71 16 6 C -0.16 -2.80 9.88 -26.73 -0.26 -3.07 16 7 C -0.15 -3.05 4.74 -91.77 -0.44 -3.49 16 8 H 0.12 2.52 7.68 -51.93 -0.40 2.13 16 9 C 0.50 12.64 7.41 -10.99 -0.08 12.56 16 10 O -0.61 -16.66 15.88 5.54 0.09 -16.57 16 11 N -0.44 -11.34 2.52 -114.82 -0.29 -11.63 16 12 C -0.33 -8.35 8.28 -14.93 -0.12 -8.47 16 13 H 0.09 2.14 7.52 -52.49 -0.39 1.75 16 14 C 0.04 1.05 5.24 -17.47 -0.09 0.95 16 15 N -0.87 -23.03 10.92 55.50 0.61 -22.43 16 16 Si 0.92 19.46 29.56 -169.99 -5.03 14.43 16 17 H -0.28 -5.85 7.11 56.52 0.40 -5.45 16 18 H -0.28 -6.00 7.11 56.52 0.40 -5.60 16 19 H -0.27 -5.56 7.11 56.52 0.40 -5.16 16 20 C 0.11 2.64 4.96 -4.04 -0.02 2.62 16 21 C -0.13 -2.85 6.26 -26.74 -0.17 -3.02 16 22 C -0.14 -2.52 9.91 37.15 0.37 -2.15 16 23 H 0.05 0.55 8.14 -51.93 -0.42 0.12 16 24 H 0.05 0.46 8.14 -51.93 -0.42 0.04 16 25 H 0.05 0.51 8.14 -51.93 -0.42 0.09 16 26 H 0.06 0.78 8.14 -51.93 -0.42 0.36 16 27 H 0.06 0.72 8.14 -51.93 -0.42 0.29 16 28 H 0.06 0.81 7.88 -51.93 -0.41 0.40 16 29 H 0.06 0.95 8.14 -51.93 -0.42 0.53 16 30 H 0.09 1.60 8.14 -51.93 -0.42 1.18 16 31 H 0.09 1.38 8.03 -51.93 -0.42 0.97 16 32 H 0.27 6.74 8.32 -40.82 -0.34 6.40 16 33 H 0.05 1.25 7.48 -51.93 -0.39 0.86 16 34 H 0.12 3.10 5.24 -51.93 -0.27 2.83 16 35 H 0.06 1.25 8.14 -51.93 -0.42 0.82 16 36 H 0.05 1.08 8.14 -51.93 -0.42 0.66 16 37 H 0.05 0.90 8.14 -51.93 -0.42 0.48 16 38 H 0.04 0.68 8.14 -51.93 -0.42 0.25 16 39 H 0.05 0.85 8.14 -51.92 -0.42 0.42 16 LS Contribution 320.88 15.07 4.84 4.84 Total: -1.00 -28.53 320.88 -7.89 -36.42 By element: Atomic # 1 Polarization: 12.97 SS G_CDS: -6.88 Total: 6.09 kcal Atomic # 6 Polarization: -9.93 SS G_CDS: -1.23 Total: -11.15 kcal Atomic # 7 Polarization: -34.37 SS G_CDS: 0.32 Total: -34.05 kcal Atomic # 8 Polarization: -16.66 SS G_CDS: 0.09 Total: -16.57 kcal Atomic # 14 Polarization: 19.46 SS G_CDS: -5.03 Total: 14.43 kcal Total LS contribution 4.84 Total: 4.84 kcal Total: -28.53 -7.89 -36.42 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000361609130.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -2.745 kcal (2) G-P(sol) polarization free energy of solvation -28.529 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -31.274 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.895 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.424 kcal (6) G-S(sol) free energy of system = (1) + (5) -39.169 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds