Wall clock time and date at job start Thu Apr 9 2020 12:10:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53001 * 109.47265 * 2 1 4 4 C 1.52999 * 109.47090 * 179.97438 * 3 2 1 5 5 H 1.09004 * 115.54490 * 29.28646 * 4 3 2 6 6 C 1.52996 * 117.50210 * 243.61031 * 4 3 2 7 7 C 1.53004 * 60.03161 * 252.50034 * 6 4 3 8 8 H 1.08998 * 117.49812 * 252.51873 * 7 6 4 9 9 C 1.50700 * 117.49820 * 107.50037 * 7 6 4 10 10 O 1.21293 * 120.00159 * 259.39275 * 9 7 6 11 11 N 1.34778 * 120.00049 * 79.39246 * 9 7 6 12 12 C 1.37106 * 119.99717 * 5.49659 * 11 9 7 13 13 H 1.07995 * 120.00147 * 325.30649 * 12 11 9 14 14 C 1.38948 * 119.99755 * 145.31420 * 12 11 9 15 15 N 1.31408 * 120.00370 * 151.73195 * 14 12 11 16 16 Si 1.86803 * 120.00053 * 331.72749 * 14 12 11 17 17 H 1.48490 * 109.47374 * 95.33845 * 16 14 12 18 18 H 1.48503 * 109.47297 * 215.34298 * 16 14 12 19 19 H 1.48504 * 109.47074 * 335.33595 * 16 14 12 20 20 C 1.46494 * 120.00213 * 185.49650 * 11 9 7 21 21 C 1.53003 * 109.47358 * 90.00162 * 20 11 9 22 22 C 1.52995 * 109.47355 * 179.97438 * 21 20 11 23 23 H 1.09000 * 109.47711 * 179.97438 * 1 2 3 24 24 H 1.09007 * 109.47242 * 300.00038 * 1 2 3 25 25 H 1.09005 * 109.47481 * 59.99772 * 1 2 3 26 26 H 1.08994 * 109.46985 * 240.00153 * 2 1 3 27 27 H 1.08994 * 109.46995 * 120.00192 * 2 1 3 28 28 H 1.09007 * 109.47022 * 59.99827 * 3 2 1 29 29 H 1.08994 * 109.47271 * 300.00023 * 3 2 1 30 30 H 1.09001 * 117.49880 * 0.02562 * 6 4 3 31 31 H 1.08996 * 117.49854 * 145.00015 * 6 4 3 32 32 H 0.97001 * 120.00322 * 179.97438 * 15 14 12 33 33 H 1.09008 * 109.47302 * 209.99913 * 20 11 9 34 34 H 1.08999 * 109.47255 * 330.00192 * 20 11 9 35 35 H 1.09002 * 109.46408 * 300.00427 * 21 20 11 36 36 H 1.08999 * 109.46913 * 59.99820 * 21 20 11 37 37 H 1.09005 * 109.47205 * 179.97438 * 22 21 20 38 38 H 1.09000 * 109.47110 * 300.00050 * 22 21 20 39 39 H 1.09003 * 109.46771 * 60.00184 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5700 1.4425 0.0006 5 1 4.0402 0.5846 -0.4801 6 6 4.2760 2.0458 1.2165 7 6 4.2772 2.7949 -0.1176 8 1 5.2126 2.8265 -0.6762 9 6 3.4134 4.0250 -0.2257 10 8 2.3360 3.9629 -0.7794 11 7 3.8381 5.1943 0.2929 12 6 5.1008 5.2929 0.8181 13 1 5.5399 4.4498 1.3304 14 6 5.8153 6.4778 0.6912 15 7 6.7141 6.8029 1.5929 16 14 5.4983 7.6087 -0.7615 17 1 4.5261 8.6597 -0.3677 18 1 6.7729 8.2453 -1.1806 19 1 4.9442 6.8199 -1.8912 20 6 2.9506 6.3598 0.2956 21 6 2.1343 6.3764 1.5895 22 6 1.2078 7.5940 1.5925 23 1 -0.3634 -1.0276 -0.0005 24 1 -0.3634 0.5139 0.8900 25 1 -0.3634 0.5139 -0.8900 26 1 1.8933 -0.5138 -0.8900 27 1 1.8933 -0.5138 0.8899 28 1 1.6766 1.9564 0.8900 29 1 1.6767 1.9563 -0.8899 30 1 3.6505 2.4424 2.0162 31 1 5.2107 1.5849 1.5357 32 1 7.2132 7.6299 1.5041 33 1 3.5463 7.2703 0.2302 34 1 2.2760 6.3048 -0.5589 35 1 1.5386 5.4659 1.6549 36 1 2.8088 6.4314 2.4439 37 1 0.6259 7.6055 2.5142 38 1 1.8039 8.5042 1.5273 39 1 0.5333 7.5393 0.7381 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000361609131.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 12:10:00 Heat of formation + Delta-G solvation = -26.028408 kcal Electronic energy + Delta-G solvation = -17907.618914 eV Core-core repulsion = 15236.694890 eV Total energy + Delta-G solvation = -2670.924024 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 239.163 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -39.28311 -36.77428 -34.97837 -33.57601 -32.84623 -31.56510 -27.20741 -26.08425 -24.91144 -22.64443 -21.56654 -21.02488 -20.10432 -18.67578 -16.68701 -16.11950 -15.44796 -14.92455 -14.65236 -14.14649 -13.93923 -13.53588 -13.25207 -12.92779 -12.60738 -12.37083 -12.20644 -11.89329 -11.65098 -11.43810 -11.39956 -10.96798 -10.92500 -10.73830 -10.59300 -10.54719 -10.44735 -10.07473 -9.75568 -9.57074 -9.28068 -9.03465 -8.36497 -7.78480 -6.50901 -3.98668 3.05049 3.22456 3.32336 3.69808 4.12571 4.23440 4.55795 4.95584 5.05313 5.30671 5.41172 5.53581 5.58032 5.61652 5.63356 5.69452 5.87993 5.91728 6.06809 6.08216 6.11035 6.19840 6.26618 6.31480 6.34175 6.39982 6.44864 6.46936 6.56552 6.70559 6.72776 6.78769 6.92546 7.03171 7.38882 8.10124 8.31513 8.98647 9.41757 9.74821 10.60156 Molecular weight = 239.16amu Principal moments of inertia in cm(-1) A = 0.025065 B = 0.007776 C = 0.006707 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1116.831544 B = 3600.021229 C = 4173.517325 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.122 4.122 3 C -0.087 4.087 4 C -0.136 4.136 5 H 0.100 0.900 6 C -0.156 4.156 7 C -0.144 4.144 8 H 0.118 0.882 9 C 0.506 3.494 10 O -0.594 6.594 11 N -0.459 5.459 12 C -0.344 4.344 13 H 0.108 0.892 14 C 0.070 3.930 15 N -0.851 5.851 16 Si 0.863 3.137 17 H -0.274 1.274 18 H -0.288 1.288 19 H -0.262 1.262 20 C 0.102 3.898 21 C -0.130 4.130 22 C -0.147 4.147 23 H 0.047 0.953 24 H 0.051 0.949 25 H 0.053 0.947 26 H 0.056 0.944 27 H 0.055 0.945 28 H 0.056 0.944 29 H 0.089 0.911 30 H 0.091 0.909 31 H 0.092 0.908 32 H 0.274 0.726 33 H 0.065 0.935 34 H 0.067 0.933 35 H 0.058 0.942 36 H 0.069 0.931 37 H 0.050 0.950 38 H 0.051 0.949 39 H 0.050 0.950 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.548 -6.131 -0.805 9.006 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.159 4.159 3 C -0.124 4.124 4 C -0.154 4.154 5 H 0.118 0.882 6 C -0.193 4.193 7 C -0.165 4.165 8 H 0.136 0.864 9 C 0.295 3.705 10 O -0.479 6.479 11 N -0.178 5.178 12 C -0.471 4.471 13 H 0.125 0.875 14 C -0.137 4.137 15 N -0.486 5.486 16 Si 0.690 3.310 17 H -0.201 1.201 18 H -0.214 1.214 19 H -0.186 1.186 20 C -0.021 4.021 21 C -0.168 4.168 22 C -0.205 4.205 23 H 0.066 0.934 24 H 0.070 0.930 25 H 0.072 0.928 26 H 0.075 0.925 27 H 0.074 0.926 28 H 0.074 0.926 29 H 0.107 0.893 30 H 0.109 0.891 31 H 0.110 0.890 32 H 0.084 0.916 33 H 0.083 0.917 34 H 0.086 0.914 35 H 0.077 0.923 36 H 0.088 0.912 37 H 0.069 0.931 38 H 0.070 0.930 39 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges -6.908 -6.000 -0.989 9.204 hybrid contribution 0.344 0.853 -0.579 1.087 sum -6.564 -5.147 -1.568 8.488 Atomic orbital electron populations 1.21754 0.96410 1.00714 1.01890 1.21549 0.95368 0.97822 1.01179 1.21257 0.92198 0.95147 1.03777 1.22399 0.95411 0.95571 1.02046 0.88214 1.22956 1.02094 1.02857 0.91395 1.21886 1.01046 0.91304 1.02219 0.86420 1.19502 0.86525 0.84732 0.79720 1.90488 1.24693 1.85822 1.46914 1.43736 1.13109 1.08332 1.52622 1.19078 0.90363 1.02145 1.35467 0.87492 1.25247 0.95501 0.96848 0.96134 1.69861 1.24663 1.23560 1.30512 0.87172 0.77421 0.81114 0.85245 1.20117 1.21428 1.18645 1.21623 0.93144 0.89722 0.97572 1.21751 0.98020 0.97737 0.99325 1.21706 0.99308 0.98442 1.01031 0.93415 0.92965 0.92753 0.92534 0.92643 0.92566 0.89276 0.89075 0.88966 0.91588 0.91669 0.91421 0.92348 0.91179 0.93051 0.93000 0.93078 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.82 9.91 37.16 0.37 -1.45 16 2 C -0.12 -1.61 5.89 -26.73 -0.16 -1.77 16 3 C -0.09 -1.44 4.09 -26.73 -0.11 -1.55 16 4 C -0.14 -2.27 5.73 -90.58 -0.52 -2.79 16 5 H 0.10 1.46 8.07 -51.93 -0.42 1.04 16 6 C -0.16 -2.72 9.37 -26.73 -0.25 -2.97 16 7 C -0.14 -2.87 4.69 -91.73 -0.43 -3.30 16 8 H 0.12 2.31 8.14 -51.93 -0.42 1.88 16 9 C 0.51 11.79 7.04 -10.98 -0.08 11.72 16 10 O -0.59 -14.56 13.67 5.55 0.08 -14.49 16 11 N -0.46 -11.11 2.21 -114.81 -0.25 -11.36 16 12 C -0.34 -8.89 9.16 -14.93 -0.14 -9.03 16 13 H 0.11 2.87 6.94 -52.49 -0.36 2.51 16 14 C 0.07 1.85 5.21 -17.47 -0.09 1.76 16 15 N -0.85 -23.25 13.96 55.50 0.77 -22.48 16 16 Si 0.86 20.46 25.36 -169.99 -4.31 16.15 16 17 H -0.27 -6.26 6.60 56.52 0.37 -5.88 16 18 H -0.29 -6.75 7.11 56.52 0.40 -6.35 16 19 H -0.26 -6.40 7.11 56.52 0.40 -6.00 16 20 C 0.10 2.31 4.34 -4.04 -0.02 2.29 16 21 C -0.13 -2.56 6.26 -26.73 -0.17 -2.73 16 22 C -0.15 -2.38 9.91 37.16 0.37 -2.01 16 23 H 0.05 0.49 8.14 -51.93 -0.42 0.07 16 24 H 0.05 0.63 8.14 -51.93 -0.42 0.21 16 25 H 0.05 0.67 8.14 -51.93 -0.42 0.25 16 26 H 0.06 0.70 8.14 -51.93 -0.42 0.28 16 27 H 0.05 0.69 8.14 -51.93 -0.42 0.27 16 28 H 0.06 1.01 7.87 -51.93 -0.41 0.60 16 29 H 0.09 1.70 6.44 -51.93 -0.33 1.37 16 30 H 0.09 1.67 8.03 -51.93 -0.42 1.25 16 31 H 0.09 1.44 8.14 -51.93 -0.42 1.02 16 32 H 0.27 7.01 8.31 -40.82 -0.34 6.67 16 33 H 0.07 1.51 3.36 -51.92 -0.17 1.33 16 34 H 0.07 1.52 7.35 -51.93 -0.38 1.14 16 35 H 0.06 1.16 8.14 -51.93 -0.42 0.74 16 36 H 0.07 1.46 8.14 -51.93 -0.42 1.04 16 37 H 0.05 0.72 8.14 -51.93 -0.42 0.30 16 38 H 0.05 0.82 8.14 -51.93 -0.42 0.40 16 39 H 0.05 0.78 8.14 -51.93 -0.42 0.35 16 LS Contribution 311.70 15.07 4.70 4.70 Total: -1.00 -27.84 311.70 -6.97 -34.81 By element: Atomic # 1 Polarization: 11.23 SS G_CDS: -6.74 Total: 4.49 kcal Atomic # 6 Polarization: -10.61 SS G_CDS: -1.22 Total: -11.83 kcal Atomic # 7 Polarization: -34.36 SS G_CDS: 0.52 Total: -33.84 kcal Atomic # 8 Polarization: -14.56 SS G_CDS: 0.08 Total: -14.49 kcal Atomic # 14 Polarization: 20.46 SS G_CDS: -4.31 Total: 16.15 kcal Total LS contribution 4.70 Total: 4.70 kcal Total: -27.84 -6.97 -34.81 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000361609131.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 8.784 kcal (2) G-P(sol) polarization free energy of solvation -27.839 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -19.055 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.974 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.813 kcal (6) G-S(sol) free energy of system = (1) + (5) -26.028 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds