Wall clock time and date at job start Thu Apr 9 2020 12:10:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.53002 * 109.47286 * 2 1 4 4 C 1.52990 * 109.47181 * 120.00584 * 2 1 3 5 5 C 1.53003 * 109.47383 * 64.99733 * 4 2 1 6 6 H 1.09002 * 115.54973 * 29.41636 * 5 4 2 7 7 C 1.53005 * 117.49874 * 243.74600 * 5 4 2 8 8 C 1.52999 * 59.99973 * 252.48565 * 7 5 4 9 9 H 1.08995 * 117.49529 * 107.48826 * 8 7 5 10 10 C 1.50693 * 117.50064 * 252.51042 * 8 7 5 11 11 O 1.21280 * 119.99991 * 68.62189 * 10 8 7 12 12 N 1.34778 * 120.00264 * 248.62816 * 10 8 7 13 13 C 1.46497 * 119.99841 * 359.97438 * 12 10 8 14 14 C 1.46504 * 120.00338 * 179.97438 * 12 10 8 15 15 C 1.50700 * 109.47102 * 89.99752 * 14 12 10 16 16 H 1.08008 * 119.99877 * 359.97438 * 15 14 12 17 17 C 1.37873 * 119.99972 * 180.02562 * 15 14 12 18 18 N 1.31510 * 120.00038 * 359.97438 * 17 15 14 19 19 Si 1.86799 * 120.00058 * 179.97438 * 17 15 14 20 20 H 1.48506 * 109.46755 * 89.99964 * 19 17 15 21 21 H 1.48496 * 109.47487 * 210.00045 * 19 17 15 22 22 H 1.48502 * 109.47269 * 330.00446 * 19 17 15 23 23 H 1.09004 * 109.46635 * 300.00137 * 1 2 3 24 24 H 1.09002 * 109.47149 * 59.99442 * 1 2 3 25 25 H 1.08989 * 109.47339 * 179.97438 * 1 2 3 26 26 H 1.09003 * 109.46723 * 240.00642 * 2 1 3 27 27 H 1.08996 * 109.46775 * 179.97438 * 3 2 1 28 28 H 1.08999 * 109.47086 * 300.00689 * 3 2 1 29 29 H 1.09003 * 109.46715 * 60.00637 * 3 2 1 30 30 H 1.09001 * 109.47451 * 304.99526 * 4 2 1 31 31 H 1.09000 * 109.47146 * 184.99877 * 4 2 1 32 32 H 1.09004 * 117.49602 * 359.97438 * 7 5 4 33 33 H 1.09004 * 117.49357 * 144.97247 * 7 5 4 34 34 H 1.09006 * 109.47168 * 90.00437 * 13 12 10 35 35 H 1.09000 * 109.47539 * 210.00208 * 13 12 10 36 36 H 1.09007 * 109.47063 * 330.00531 * 13 12 10 37 37 H 1.08991 * 109.46984 * 209.99439 * 14 12 10 38 38 H 1.08998 * 109.46783 * 329.99610 * 14 12 10 39 39 H 0.96998 * 120.00468 * 179.97438 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0400 -0.7213 1.2491 5 6 1.6353 -2.1956 1.1878 6 1 1.5406 -2.6158 0.1865 7 6 0.6768 -2.7103 2.2635 8 6 2.1514 -3.1170 2.2948 9 1 2.7796 -2.6731 3.0669 10 6 2.4900 -4.5361 1.9173 11 8 2.3496 -4.9089 0.7718 12 7 2.9487 -5.3911 2.8528 13 6 3.1187 -4.9407 4.2364 14 6 3.2773 -6.7709 2.4860 15 6 4.7230 -6.8487 2.0677 16 1 5.3357 -5.9592 2.0741 17 6 5.2633 -8.0552 1.6760 18 7 4.5172 -9.1381 1.6678 19 14 7.0551 -8.1515 1.1568 20 1 7.8994 -8.4416 2.3437 21 1 7.2225 -9.2338 0.1539 22 1 7.4681 -6.8557 0.5605 23 1 -0.3633 0.5139 0.8900 24 1 -0.3633 0.5139 -0.8899 25 1 -0.3633 -1.0275 -0.0005 26 1 1.8933 -0.5138 -0.8901 27 1 3.1301 1.4424 0.0005 28 1 1.6767 1.9564 -0.8899 29 1 1.6768 1.9563 0.8901 30 1 1.6055 -0.2619 2.1369 31 1 3.1264 -0.6444 1.2950 32 1 0.3349 -1.9988 3.0152 33 1 -0.0488 -3.4690 1.9698 34 1 2.1967 -5.1150 4.7911 35 1 3.9331 -5.4959 4.7018 36 1 3.3527 -3.8761 4.2458 37 1 3.1114 -7.4239 3.3427 38 1 2.6422 -7.0880 1.6589 39 1 4.8972 -9.9868 1.3919 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000387741045.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 12:10:18 Heat of formation + Delta-G solvation = -33.963660 kcal Electronic energy + Delta-G solvation = -17148.019870 eV Core-core repulsion = 14476.751748 eV Total energy + Delta-G solvation = -2671.268122 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 239.163 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -39.45627 -37.36460 -35.01526 -34.53657 -32.53759 -28.24487 -27.37457 -27.22699 -25.77952 -24.08269 -21.87959 -20.88699 -20.00565 -18.20021 -16.60984 -16.39374 -15.44671 -15.13882 -14.57068 -14.45621 -14.10733 -13.85089 -13.26073 -13.01148 -12.45557 -12.34111 -12.17305 -12.08599 -11.93998 -11.60423 -11.46587 -11.22033 -11.12445 -10.92279 -10.86587 -10.67565 -10.55979 -10.14438 -9.97525 -9.72013 -9.59180 -8.83438 -8.41410 -7.58760 -6.01950 -4.06679 3.23631 3.31641 3.38168 3.43476 3.93750 4.17198 4.46571 4.66820 4.83021 4.87957 5.07859 5.13047 5.21283 5.31858 5.43021 5.49012 5.58079 5.64555 5.65983 5.74220 5.79209 5.83341 5.84910 5.99759 5.99991 6.11278 6.16300 6.24429 6.29011 6.30773 6.52036 7.10140 7.47216 7.58981 7.94865 8.26306 8.48217 8.93380 9.16649 9.58501 11.06143 Molecular weight = 239.16amu Principal moments of inertia in cm(-1) A = 0.031975 B = 0.004923 C = 0.004621 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 875.465327 B = 5686.780542 C = 6058.260580 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.096 4.096 3 C -0.147 4.147 4 C -0.083 4.083 5 C -0.120 4.120 6 H 0.116 0.884 7 C -0.152 4.152 8 C -0.185 4.185 9 H 0.117 0.883 10 C 0.532 3.468 11 O -0.544 6.544 12 N -0.600 5.600 13 C 0.086 3.914 14 C 0.245 3.755 15 C -0.526 4.526 16 H 0.057 0.943 17 C 0.060 3.940 18 N -0.896 5.896 19 Si 0.898 3.102 20 H -0.280 1.280 21 H -0.285 1.285 22 H -0.274 1.274 23 H 0.051 0.949 24 H 0.049 0.951 25 H 0.060 0.940 26 H 0.072 0.928 27 H 0.053 0.947 28 H 0.052 0.948 29 H 0.052 0.948 30 H 0.063 0.937 31 H 0.066 0.934 32 H 0.097 0.903 33 H 0.095 0.905 34 H 0.043 0.957 35 H 0.071 0.929 36 H 0.057 0.943 37 H 0.032 0.968 38 H 0.043 0.957 39 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.606 17.582 2.871 19.000 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.114 4.114 3 C -0.205 4.205 4 C -0.121 4.121 5 C -0.139 4.139 6 H 0.134 0.866 7 C -0.189 4.189 8 C -0.206 4.206 9 H 0.135 0.865 10 C 0.319 3.681 11 O -0.422 6.422 12 N -0.331 5.331 13 C -0.058 4.058 14 C 0.126 3.874 15 C -0.564 4.564 16 H 0.075 0.925 17 C -0.141 4.141 18 N -0.535 5.535 19 Si 0.726 3.274 20 H -0.206 1.206 21 H -0.211 1.211 22 H -0.199 1.199 23 H 0.070 0.930 24 H 0.068 0.932 25 H 0.079 0.921 26 H 0.090 0.910 27 H 0.073 0.927 28 H 0.071 0.929 29 H 0.071 0.929 30 H 0.081 0.919 31 H 0.085 0.915 32 H 0.115 0.885 33 H 0.114 0.886 34 H 0.062 0.938 35 H 0.090 0.910 36 H 0.076 0.924 37 H 0.050 0.950 38 H 0.061 0.939 39 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -6.663 17.147 2.242 18.533 hybrid contribution 1.134 -0.238 -0.064 1.160 sum -5.530 16.909 2.178 17.923 Atomic orbital electron populations 1.21841 0.95215 1.02162 1.01097 1.21111 0.96024 0.95747 0.98532 1.21845 1.00966 0.96172 1.01468 1.21260 1.00769 0.92258 0.97780 1.22367 1.01928 0.93758 0.95803 0.86619 1.23016 0.91158 1.03032 1.01714 1.22437 0.99023 0.95290 1.03866 0.86484 1.19413 0.77839 0.85559 0.85318 1.90647 1.54222 1.77864 1.19450 1.48072 1.63139 1.13991 1.07894 1.21631 1.00967 0.99478 0.83755 1.19288 0.96270 0.75167 0.96716 1.21449 0.95680 0.94470 1.44844 0.92481 1.24938 0.98250 0.95522 0.95426 1.69932 1.36022 0.99467 1.48055 0.86492 0.84711 0.77824 0.78376 1.20633 1.21062 1.19893 0.92991 0.93209 0.92096 0.90967 0.92741 0.92863 0.92883 0.91855 0.91511 0.88466 0.88631 0.93820 0.90974 0.92404 0.95015 0.93897 0.92732 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.36 9.01 37.16 0.33 -1.02 16 2 C -0.10 -0.96 2.88 -90.62 -0.26 -1.22 16 3 C -0.15 -1.25 9.19 37.16 0.34 -0.91 16 4 C -0.08 -0.91 4.96 -26.73 -0.13 -1.04 16 5 C -0.12 -1.67 4.24 -90.62 -0.38 -2.05 16 6 H 0.12 1.88 7.60 -51.93 -0.39 1.49 16 7 C -0.15 -1.97 9.88 -26.73 -0.26 -2.23 16 8 C -0.18 -2.92 5.01 -91.77 -0.46 -3.38 16 9 H 0.12 1.60 6.44 -51.93 -0.33 1.27 16 10 C 0.53 11.63 7.46 -10.99 -0.08 11.55 16 11 O -0.54 -14.29 15.84 5.56 0.09 -14.20 16 12 N -0.60 -13.32 2.86 -182.96 -0.52 -13.84 16 13 C 0.09 1.42 10.26 59.85 0.61 2.04 16 14 C 0.24 6.63 5.16 -5.19 -0.03 6.60 16 15 C -0.53 -15.33 9.39 -34.44 -0.32 -15.65 16 16 H 0.06 1.67 7.81 -52.48 -0.41 1.26 16 17 C 0.06 1.76 5.46 -17.82 -0.10 1.67 16 18 N -0.90 -27.10 13.29 55.43 0.74 -26.36 16 19 Si 0.90 22.23 29.54 -169.99 -5.02 17.21 16 20 H -0.28 -6.70 7.11 56.52 0.40 -6.30 16 21 H -0.28 -6.97 7.11 56.52 0.40 -6.57 16 22 H -0.27 -6.78 7.11 56.52 0.40 -6.38 16 23 H 0.05 0.44 8.14 -51.93 -0.42 0.02 16 24 H 0.05 0.42 8.14 -51.93 -0.42 0.00 16 25 H 0.06 0.62 7.38 -51.94 -0.38 0.24 16 26 H 0.07 0.79 8.14 -51.93 -0.42 0.37 16 27 H 0.05 0.46 8.14 -51.93 -0.42 0.04 16 28 H 0.05 0.42 8.14 -51.93 -0.42 -0.01 16 29 H 0.05 0.41 8.14 -51.93 -0.42 -0.01 16 30 H 0.06 0.61 7.88 -51.93 -0.41 0.20 16 31 H 0.07 0.75 8.14 -51.93 -0.42 0.33 16 32 H 0.10 1.00 8.03 -51.93 -0.42 0.58 16 33 H 0.10 1.33 8.14 -51.93 -0.42 0.91 16 34 H 0.04 0.63 8.14 -51.93 -0.42 0.21 16 35 H 0.07 1.22 8.07 -51.93 -0.42 0.80 16 36 H 0.06 0.79 6.00 -51.92 -0.31 0.48 16 37 H 0.03 0.86 8.07 -51.93 -0.42 0.44 16 38 H 0.04 1.30 7.42 -51.93 -0.39 0.92 16 39 H 0.26 7.49 8.31 -40.82 -0.34 7.15 16 LS Contribution 322.02 15.07 4.85 4.85 Total: -1.00 -33.12 322.02 -7.43 -40.55 By element: Atomic # 1 Polarization: 4.25 SS G_CDS: -6.82 Total: -2.57 kcal Atomic # 6 Polarization: -4.90 SS G_CDS: -0.74 Total: -5.64 kcal Atomic # 7 Polarization: -40.42 SS G_CDS: 0.21 Total: -40.20 kcal Atomic # 8 Polarization: -14.29 SS G_CDS: 0.09 Total: -14.20 kcal Atomic # 14 Polarization: 22.23 SS G_CDS: -5.02 Total: 17.21 kcal Total LS contribution 4.85 Total: 4.85 kcal Total: -33.12 -7.43 -40.55 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000387741045.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 6.583 kcal (2) G-P(sol) polarization free energy of solvation -33.118 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -26.535 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.429 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.547 kcal (6) G-S(sol) free energy of system = (1) + (5) -33.964 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds