Wall clock time and date at job start Thu Apr 9 2020 12:10:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.53002 * 109.47286 * 2 1 4 4 C 1.52990 * 109.47181 * 120.00584 * 2 1 3 5 5 C 1.53003 * 109.47383 * 64.99733 * 4 2 1 6 6 H 1.09002 * 115.54973 * 29.41636 * 5 4 2 7 7 C 1.53005 * 117.49874 * 243.74600 * 5 4 2 8 8 C 1.52999 * 59.99973 * 252.48565 * 7 5 4 9 9 H 1.08995 * 117.49529 * 107.48826 * 8 7 5 10 10 C 1.50693 * 117.50064 * 252.51042 * 8 7 5 11 11 O 1.21280 * 119.99991 * 68.62189 * 10 8 7 12 12 N 1.34778 * 120.00264 * 248.62816 * 10 8 7 13 13 C 1.46497 * 119.99841 * 359.97438 * 12 10 8 14 14 C 1.46504 * 120.00338 * 179.97438 * 12 10 8 15 15 C 1.50700 * 109.47102 * 89.99752 * 14 12 10 16 16 H 1.08008 * 119.99877 * 359.97438 * 15 14 12 17 17 C 1.37873 * 119.99972 * 180.02562 * 15 14 12 18 18 N 1.31510 * 120.00038 * 359.97438 * 17 15 14 19 19 Si 1.86799 * 120.00058 * 179.97438 * 17 15 14 20 20 H 1.48506 * 109.46755 * 89.99964 * 19 17 15 21 21 H 1.48496 * 109.47487 * 210.00045 * 19 17 15 22 22 H 1.48502 * 109.47269 * 330.00446 * 19 17 15 23 23 H 1.09004 * 109.46635 * 300.00137 * 1 2 3 24 24 H 1.09002 * 109.47149 * 59.99442 * 1 2 3 25 25 H 1.08989 * 109.47339 * 179.97438 * 1 2 3 26 26 H 1.09003 * 109.46723 * 240.00642 * 2 1 3 27 27 H 1.08996 * 109.46775 * 179.97438 * 3 2 1 28 28 H 1.08999 * 109.47086 * 300.00689 * 3 2 1 29 29 H 1.09003 * 109.46715 * 60.00637 * 3 2 1 30 30 H 1.09001 * 109.47451 * 304.99526 * 4 2 1 31 31 H 1.09000 * 109.47146 * 184.99877 * 4 2 1 32 32 H 1.09004 * 117.49602 * 359.97438 * 7 5 4 33 33 H 1.09004 * 117.49357 * 144.97247 * 7 5 4 34 34 H 1.09006 * 109.47168 * 90.00437 * 13 12 10 35 35 H 1.09000 * 109.47539 * 210.00208 * 13 12 10 36 36 H 1.09007 * 109.47063 * 330.00531 * 13 12 10 37 37 H 1.08991 * 109.46984 * 209.99439 * 14 12 10 38 38 H 1.08998 * 109.46783 * 329.99610 * 14 12 10 39 39 H 0.96998 * 120.00468 * 179.97438 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0400 -0.7213 1.2491 5 6 1.6353 -2.1956 1.1878 6 1 1.5406 -2.6158 0.1865 7 6 0.6768 -2.7103 2.2635 8 6 2.1514 -3.1170 2.2948 9 1 2.7796 -2.6731 3.0669 10 6 2.4900 -4.5361 1.9173 11 8 2.3496 -4.9089 0.7718 12 7 2.9487 -5.3911 2.8528 13 6 3.1187 -4.9407 4.2364 14 6 3.2773 -6.7709 2.4860 15 6 4.7230 -6.8487 2.0677 16 1 5.3357 -5.9592 2.0741 17 6 5.2633 -8.0552 1.6760 18 7 4.5172 -9.1381 1.6678 19 14 7.0551 -8.1515 1.1568 20 1 7.8994 -8.4416 2.3437 21 1 7.2225 -9.2338 0.1539 22 1 7.4681 -6.8557 0.5605 23 1 -0.3633 0.5139 0.8900 24 1 -0.3633 0.5139 -0.8899 25 1 -0.3633 -1.0275 -0.0005 26 1 1.8933 -0.5138 -0.8901 27 1 3.1301 1.4424 0.0005 28 1 1.6767 1.9564 -0.8899 29 1 1.6768 1.9563 0.8901 30 1 1.6055 -0.2619 2.1369 31 1 3.1264 -0.6444 1.2950 32 1 0.3349 -1.9988 3.0152 33 1 -0.0488 -3.4690 1.9698 34 1 2.1967 -5.1150 4.7911 35 1 3.9331 -5.4959 4.7018 36 1 3.3527 -3.8761 4.2458 37 1 3.1114 -7.4239 3.3427 38 1 2.6422 -7.0880 1.6589 39 1 4.8972 -9.9868 1.3919 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000387741045.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 12:10:17 Heat of formation + Delta-G solvation = -54.012215 kcal Electronic energy + Delta-G solvation = -17148.889241 eV Core-core repulsion = 14476.751748 eV Total energy + Delta-G solvation = -2672.137493 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 239.163 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -40.99268 -38.57464 -36.61312 -35.78467 -34.70160 -30.13655 -28.44308 -27.92117 -27.33234 -25.88909 -23.50972 -21.95500 -20.87873 -19.76559 -18.72942 -18.03301 -17.19244 -16.36199 -16.20789 -15.87751 -15.34063 -14.98511 -14.51777 -14.26918 -14.00593 -13.78730 -13.48118 -13.38222 -13.17774 -12.97965 -12.89003 -12.69544 -12.50786 -12.34984 -12.22413 -12.06863 -11.76838 -11.73828 -11.46240 -11.03829 -10.82546 -10.66345 -10.56317 -9.43931 -8.25097 -6.40810 1.34292 1.37885 1.48234 1.68467 2.29025 2.42405 2.93764 3.03944 3.59864 3.78521 3.88486 4.10329 4.18053 4.19216 4.32002 4.49821 4.62222 4.69820 4.77062 4.85880 4.88222 4.90049 4.92845 4.99216 5.01193 5.08398 5.12919 5.20243 5.24445 5.35905 5.44233 5.52831 5.53301 5.58462 5.82265 6.02957 6.66565 6.77548 7.25265 7.47311 8.82147 Molecular weight = 239.16amu Principal moments of inertia in cm(-1) A = 0.031975 B = 0.004923 C = 0.004621 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 875.465327 B = 5686.780542 C = 6058.260580 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.098 4.098 3 C -0.143 4.143 4 C -0.075 4.075 5 C -0.119 4.119 6 H 0.081 0.919 7 C -0.126 4.126 8 C -0.194 4.194 9 H 0.149 0.851 10 C 0.519 3.481 11 O -0.605 6.605 12 N -0.608 5.608 13 C 0.081 3.919 14 C 0.258 3.742 15 C -0.546 4.546 16 H 0.052 0.948 17 C 0.007 3.993 18 N -0.929 5.929 19 Si 0.971 3.029 20 H -0.260 1.260 21 H -0.279 1.279 22 H -0.274 1.274 23 H 0.067 0.933 24 H 0.054 0.946 25 H 0.045 0.955 26 H 0.051 0.949 27 H 0.052 0.948 28 H 0.057 0.943 29 H 0.066 0.934 30 H 0.090 0.910 31 H 0.064 0.936 32 H 0.141 0.859 33 H 0.079 0.921 34 H 0.069 0.931 35 H 0.065 0.935 36 H 0.094 0.906 37 H 0.024 0.976 38 H -0.005 1.005 39 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.097 20.140 4.477 21.513 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.116 4.116 3 C -0.201 4.201 4 C -0.112 4.112 5 C -0.137 4.137 6 H 0.099 0.901 7 C -0.163 4.163 8 C -0.215 4.215 9 H 0.167 0.833 10 C 0.309 3.691 11 O -0.487 6.487 12 N -0.338 5.338 13 C -0.061 4.061 14 C 0.137 3.863 15 C -0.584 4.584 16 H 0.070 0.930 17 C -0.192 4.192 18 N -0.569 5.569 19 Si 0.795 3.205 20 H -0.185 1.185 21 H -0.204 1.204 22 H -0.199 1.199 23 H 0.086 0.914 24 H 0.073 0.927 25 H 0.064 0.936 26 H 0.070 0.930 27 H 0.071 0.929 28 H 0.076 0.924 29 H 0.085 0.915 30 H 0.108 0.892 31 H 0.083 0.917 32 H 0.159 0.841 33 H 0.098 0.902 34 H 0.088 0.912 35 H 0.084 0.916 36 H 0.113 0.887 37 H 0.042 0.958 38 H 0.013 0.987 39 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -6.160 19.731 3.900 21.035 hybrid contribution 0.905 -1.064 -0.583 1.513 sum -5.256 18.668 3.317 19.675 Atomic orbital electron populations 1.21823 0.94598 1.01521 1.02171 1.21112 0.96577 0.96573 0.97382 1.21807 1.00884 0.94957 1.02404 1.21260 1.00824 0.89917 0.99238 1.22389 1.02153 0.95155 0.94052 0.90097 1.23160 0.88923 1.02582 1.01636 1.22366 1.01834 0.91306 1.05954 0.83312 1.20535 0.76468 0.87804 0.84339 1.90607 1.56614 1.79473 1.22034 1.48132 1.62923 1.12270 1.10506 1.21934 1.02186 1.01447 0.80549 1.18763 0.94667 0.78277 0.94625 1.21699 0.96538 0.94599 1.45582 0.92996 1.25898 1.03241 0.94998 0.95062 1.70052 1.38196 1.00111 1.48496 0.85372 0.78843 0.77734 0.78594 1.18506 1.20439 1.19883 0.91423 0.92681 0.93557 0.93019 0.92873 0.92362 0.91537 0.89199 0.91711 0.84096 0.90232 0.91210 0.91633 0.88724 0.95756 0.98731 0.92299 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.40 9.01 71.98 0.65 -1.75 16 2 C -0.10 -1.79 2.88 -10.79 -0.03 -1.82 16 3 C -0.14 -2.07 9.19 71.98 0.66 -1.41 16 4 C -0.08 -1.44 4.96 30.59 0.15 -1.29 16 5 C -0.12 -3.17 4.24 -10.79 -0.05 -3.22 16 6 H 0.08 2.76 7.60 -2.39 -0.02 2.74 16 7 C -0.13 -2.94 9.88 30.60 0.30 -2.64 16 8 C -0.19 -5.78 5.01 -11.54 -0.06 -5.83 16 9 H 0.15 3.46 6.44 -2.39 -0.02 3.45 16 10 C 0.52 23.18 7.46 87.65 0.65 23.83 16 11 O -0.60 -33.70 15.84 -3.03 -0.05 -33.75 16 12 N -0.61 -27.42 2.86 -851.14 -2.43 -29.85 16 13 C 0.08 2.53 10.26 127.77 1.31 3.84 16 14 C 0.26 14.64 5.16 85.63 0.44 15.08 16 15 C -0.55 -32.73 9.39 25.60 0.24 -32.49 16 16 H 0.05 3.09 7.81 -2.91 -0.02 3.06 16 17 C 0.01 0.41 5.46 84.65 0.46 0.87 16 18 N -0.93 -57.59 13.29 21.45 0.28 -57.31 16 19 Si 0.97 45.95 29.54 68.60 2.03 47.97 16 20 H -0.26 -11.45 7.11 99.48 0.71 -10.74 16 21 H -0.28 -12.87 7.11 99.48 0.71 -12.16 16 22 H -0.27 -12.86 7.11 99.48 0.71 -12.16 16 23 H 0.07 0.92 8.14 -2.38 -0.02 0.90 16 24 H 0.05 0.85 8.14 -2.39 -0.02 0.83 16 25 H 0.05 0.90 7.38 -2.39 -0.02 0.88 16 26 H 0.05 1.14 8.14 -2.39 -0.02 1.12 16 27 H 0.05 0.78 8.14 -2.39 -0.02 0.76 16 28 H 0.06 0.78 8.14 -2.39 -0.02 0.76 16 29 H 0.07 0.80 8.14 -2.39 -0.02 0.78 16 30 H 0.09 1.29 7.88 -2.39 -0.02 1.27 16 31 H 0.06 1.29 8.14 -2.39 -0.02 1.27 16 32 H 0.14 2.13 8.03 -2.39 -0.02 2.11 16 33 H 0.08 2.15 8.14 -2.38 -0.02 2.13 16 34 H 0.07 1.84 8.14 -2.38 -0.02 1.82 16 35 H 0.06 2.14 8.07 -2.39 -0.02 2.12 16 36 H 0.09 2.26 6.00 -2.38 -0.01 2.24 16 37 H 0.02 1.39 8.07 -2.39 -0.02 1.37 16 38 H -0.01 -0.36 7.42 -2.39 -0.02 -0.37 16 39 H 0.27 15.49 8.31 -92.71 -0.77 14.72 16 Total: -1.00 -76.43 322.02 5.56 -70.87 By element: Atomic # 1 Polarization: 7.90 SS G_CDS: 0.99 Total: 8.89 kcal Atomic # 6 Polarization: -11.56 SS G_CDS: 4.74 Total: -6.82 kcal Atomic # 7 Polarization: -85.01 SS G_CDS: -2.15 Total: -87.16 kcal Atomic # 8 Polarization: -33.70 SS G_CDS: -0.05 Total: -33.75 kcal Atomic # 14 Polarization: 45.95 SS G_CDS: 2.03 Total: 47.97 kcal Total: -76.43 5.56 -70.87 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000387741045.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 16.857 kcal (2) G-P(sol) polarization free energy of solvation -76.433 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -59.576 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.564 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.869 kcal (6) G-S(sol) free energy of system = (1) + (5) -54.012 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds