Wall clock time and date at job start Thu Apr 9 2020 12:10:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53001 * 109.47066 * 2 1 4 4 C 1.53003 * 109.46883 * 119.99471 * 2 1 3 5 5 C 1.50705 * 109.47206 * 65.00390 * 4 2 1 6 6 O 1.21284 * 119.99639 * 359.97438 * 5 4 2 7 7 N 1.34771 * 120.00202 * 180.02562 * 5 4 2 8 8 C 1.46931 * 120.63145 * 359.97034 * 7 5 4 9 9 C 1.53191 * 108.76527 * 126.40558 * 8 7 5 10 10 C 1.53046 * 109.30997 * 54.65907 * 9 8 7 11 11 C 1.53039 * 109.52798 * 298.61471 * 10 9 8 12 12 H 1.09000 * 109.49863 * 301.42271 * 11 10 9 13 13 C 1.50697 * 109.50029 * 181.32171 * 11 10 9 14 14 H 1.07995 * 120.00317 * 239.99666 * 13 11 10 15 15 C 1.37876 * 119.99651 * 59.99697 * 13 11 10 16 16 N 1.31519 * 120.00506 * 0.02562 * 15 13 11 17 17 Si 1.86803 * 120.00017 * 179.97438 * 15 13 11 18 18 H 1.48505 * 109.46813 * 60.00411 * 17 15 13 19 19 H 1.48494 * 109.47260 * 180.02562 * 17 15 13 20 20 H 1.48498 * 109.47392 * 300.00609 * 17 15 13 21 21 C 1.46919 * 120.63242 * 179.97438 * 7 5 4 22 22 H 1.08997 * 109.47017 * 300.00294 * 1 2 3 23 23 H 1.08995 * 109.46877 * 60.00112 * 1 2 3 24 24 H 1.08995 * 109.47116 * 180.02562 * 1 2 3 25 25 H 1.09000 * 109.47378 * 239.99344 * 2 1 3 26 26 H 1.09001 * 109.46891 * 180.02562 * 3 2 1 27 27 H 1.09003 * 109.46759 * 299.99237 * 3 2 1 28 28 H 1.08997 * 109.47442 * 59.99967 * 3 2 1 29 29 H 1.08997 * 109.47595 * 305.00062 * 4 2 1 30 30 H 1.09004 * 109.46974 * 185.00183 * 4 2 1 31 31 H 1.08998 * 109.58959 * 246.20295 * 8 7 5 32 32 H 1.09003 * 109.58181 * 6.48778 * 8 7 5 33 33 H 1.08998 * 109.50939 * 294.70294 * 9 8 7 34 34 H 1.09003 * 109.48831 * 174.59930 * 9 8 7 35 35 H 1.09002 * 109.46115 * 178.59924 * 10 9 8 36 36 H 1.09004 * 109.45806 * 58.62809 * 10 9 8 37 37 H 0.96994 * 120.00215 * 180.02562 * 16 15 13 38 38 H 1.08997 * 109.59005 * 113.79701 * 21 7 5 39 39 H 1.09000 * 109.58835 * 353.37037 * 21 7 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7212 1.2494 5 6 1.6413 -2.1733 1.1891 6 8 1.0110 -2.5902 0.2405 7 7 1.9844 -3.0084 2.1897 8 6 2.7475 -2.5180 3.3456 9 6 1.9958 -2.8921 4.6270 10 6 1.7364 -4.4004 4.6395 11 6 0.8645 -4.7794 3.4402 12 1 -0.0750 -4.2285 3.4848 13 6 0.5825 -6.2594 3.4711 14 1 0.8954 -6.8861 2.6490 15 6 -0.0751 -6.8135 4.5488 16 7 -0.4566 -6.0504 5.5497 17 14 -0.4253 -8.6480 4.5869 18 1 0.8550 -9.3978 4.5236 19 1 -1.1381 -8.9899 5.8439 20 1 -1.2716 -9.0147 3.4230 21 6 1.6025 -4.4264 2.1455 22 1 -0.3633 0.5139 0.8899 23 1 -0.3633 0.5138 -0.8900 24 1 -0.3633 -1.0276 0.0005 25 1 1.8934 -0.5139 -0.8899 26 1 3.1300 1.4425 -0.0005 27 1 1.6767 1.9563 -0.8901 28 1 1.6767 1.9564 0.8899 29 1 1.6054 -0.2616 2.1370 30 1 3.1263 -0.6442 1.2953 31 1 3.7353 -2.9787 3.3535 32 1 2.8500 -1.4346 3.2828 33 1 1.0456 -2.3592 4.6603 34 1 2.5972 -2.6193 5.4942 35 1 1.2235 -4.6730 5.5619 36 1 2.6858 -4.9326 4.5809 37 1 -0.9189 -6.4403 6.3081 38 1 2.4968 -5.0430 2.0553 39 1 0.9475 -4.6020 1.2921 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000397587864.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 12:10:28 Heat of formation + Delta-G solvation = -64.621241 kcal Electronic energy + Delta-G solvation = -17851.977494 eV Core-core repulsion = 15179.379960 eV Total energy + Delta-G solvation = -2672.597534 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 239.163 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -39.73838 -37.06420 -35.27076 -33.48660 -31.34183 -30.37605 -28.02883 -27.01035 -25.05441 -24.21288 -21.69572 -20.67587 -19.41354 -18.20133 -16.81365 -16.15268 -15.57457 -15.11158 -14.55320 -14.22312 -13.73638 -13.56644 -13.40739 -12.79618 -12.64967 -12.35215 -12.17564 -12.04621 -11.91681 -11.70935 -11.04082 -10.92517 -10.85781 -10.79015 -10.69202 -10.58984 -10.26363 -9.94929 -9.76076 -9.43560 -9.16597 -8.81298 -8.37904 -7.85235 -6.01563 -4.08788 3.11884 3.31663 3.36010 3.38863 3.60774 4.42846 4.83411 4.86637 4.98622 5.26618 5.32587 5.39673 5.54383 5.64953 5.65889 5.67651 5.78074 5.81120 5.94535 6.02793 6.08925 6.21253 6.34110 6.42093 6.43842 6.49757 6.61134 6.68519 6.82950 7.00770 7.18317 7.34383 7.69134 7.92914 8.06318 8.08317 8.38325 8.72219 8.94893 9.56080 11.03906 Molecular weight = 239.16amu Principal moments of inertia in cm(-1) A = 0.040436 B = 0.005675 C = 0.005341 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 692.288044 B = 4932.753433 C = 5241.231068 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.080 4.080 3 C -0.147 4.147 4 C -0.136 4.136 5 C 0.507 3.493 6 O -0.550 6.550 7 N -0.605 5.605 8 C 0.109 3.891 9 C -0.135 4.135 10 C -0.112 4.112 11 C 0.040 3.960 12 H 0.028 0.972 13 C -0.515 4.515 14 H 0.056 0.944 15 C 0.064 3.936 16 N -0.890 5.890 17 Si 0.893 3.107 18 H -0.277 1.277 19 H -0.287 1.287 20 H -0.277 1.277 21 C 0.117 3.883 22 H 0.046 0.954 23 H 0.048 0.952 24 H 0.078 0.922 25 H 0.075 0.925 26 H 0.052 0.948 27 H 0.055 0.945 28 H 0.053 0.947 29 H 0.089 0.911 30 H 0.086 0.914 31 H 0.061 0.939 32 H 0.070 0.930 33 H 0.057 0.943 34 H 0.056 0.944 35 H 0.095 0.905 36 H 0.035 0.965 37 H 0.261 0.739 38 H 0.053 0.947 39 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.525 12.044 -4.344 14.371 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.099 4.099 3 C -0.204 4.204 4 C -0.176 4.176 5 C 0.295 3.705 6 O -0.429 6.429 7 N -0.338 5.338 8 C -0.014 4.014 9 C -0.173 4.173 10 C -0.150 4.150 11 C 0.021 3.979 12 H 0.047 0.953 13 C -0.553 4.553 14 H 0.074 0.926 15 C -0.138 4.138 16 N -0.528 5.528 17 Si 0.721 3.279 18 H -0.203 1.203 19 H -0.213 1.213 20 H -0.202 1.202 21 C -0.004 4.004 22 H 0.065 0.935 23 H 0.067 0.933 24 H 0.096 0.904 25 H 0.094 0.906 26 H 0.071 0.929 27 H 0.074 0.926 28 H 0.073 0.927 29 H 0.107 0.893 30 H 0.105 0.895 31 H 0.079 0.921 32 H 0.089 0.911 33 H 0.076 0.924 34 H 0.075 0.925 35 H 0.113 0.887 36 H 0.054 0.946 37 H 0.071 0.929 38 H 0.071 0.929 39 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges 6.101 11.802 -4.662 14.080 hybrid contribution -0.118 -0.981 0.320 1.039 sum 5.982 10.821 -4.342 13.105 Atomic orbital electron populations 1.21954 0.94768 1.03725 1.00588 1.20852 0.96703 0.94931 0.97424 1.21864 1.00645 0.96154 1.01728 1.21785 1.02225 0.93176 1.00410 1.20581 0.79545 0.88037 0.82291 1.90616 1.40717 1.77945 1.33598 1.48341 1.54401 1.11102 1.19907 1.21734 0.94789 0.98324 0.86552 1.22003 0.99531 1.00774 0.95019 1.21631 0.99110 0.90212 1.04093 1.18955 0.93981 0.96213 0.88733 0.95344 1.21047 1.37207 0.92595 1.04474 0.92555 1.24933 0.95335 0.97942 0.95556 1.69861 1.39592 1.35048 1.08338 0.86640 0.78480 0.85483 0.77300 1.20256 1.21307 1.20223 1.21961 0.99110 0.77558 1.01813 0.93505 0.93301 0.90361 0.90621 0.92888 0.92639 0.92747 0.89264 0.89521 0.92054 0.91116 0.92405 0.92512 0.88654 0.94617 0.92930 0.92883 0.90357 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.06 8.93 37.16 0.33 -1.73 16 2 C -0.08 -1.00 2.57 -90.62 -0.23 -1.23 16 3 C -0.15 -1.39 9.19 37.16 0.34 -1.05 16 4 C -0.14 -1.77 3.52 -27.88 -0.10 -1.87 16 5 C 0.51 9.09 7.42 -10.99 -0.08 9.01 16 6 O -0.55 -11.65 13.38 5.55 0.07 -11.58 16 7 N -0.61 -11.26 2.97 -172.79 -0.51 -11.77 16 8 C 0.11 1.68 6.34 -3.71 -0.02 1.66 16 9 C -0.14 -2.39 6.08 -26.61 -0.16 -2.55 16 10 C -0.11 -2.53 4.96 -26.69 -0.13 -2.66 16 11 C 0.04 1.00 2.25 -91.67 -0.21 0.79 16 12 H 0.03 0.79 8.14 -51.93 -0.42 0.37 16 13 C -0.51 -14.02 8.56 -34.44 -0.29 -14.32 16 14 H 0.06 1.52 7.74 -52.49 -0.41 1.11 16 15 C 0.06 1.74 5.30 -17.82 -0.09 1.65 16 16 N -0.89 -25.04 11.31 55.43 0.63 -24.41 16 17 Si 0.89 21.17 29.54 -169.99 -5.02 16.14 16 18 H -0.28 -6.47 7.11 56.52 0.40 -6.06 16 19 H -0.29 -6.75 7.11 56.52 0.40 -6.35 16 20 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16 21 C 0.12 2.56 5.65 -3.73 -0.02 2.53 16 22 H 0.05 0.58 8.14 -51.93 -0.42 0.16 16 23 H 0.05 0.58 8.14 -51.93 -0.42 0.16 16 24 H 0.08 1.31 5.95 -51.93 -0.31 1.00 16 25 H 0.08 1.03 7.96 -51.93 -0.41 0.62 16 26 H 0.05 0.45 8.14 -51.93 -0.42 0.03 16 27 H 0.05 0.49 8.14 -51.93 -0.42 0.07 16 28 H 0.05 0.48 8.14 -51.93 -0.42 0.06 16 29 H 0.09 1.07 7.69 -51.93 -0.40 0.67 16 30 H 0.09 0.95 7.94 -51.93 -0.41 0.53 16 31 H 0.06 0.89 8.14 -51.93 -0.42 0.46 16 32 H 0.07 0.86 5.93 -51.93 -0.31 0.55 16 33 H 0.06 1.08 8.14 -51.93 -0.42 0.65 16 34 H 0.06 0.87 8.14 -51.93 -0.42 0.45 16 35 H 0.10 2.43 6.04 -51.93 -0.31 2.11 16 36 H 0.04 0.79 8.14 -51.93 -0.42 0.36 16 37 H 0.26 7.04 8.31 -40.82 -0.34 6.70 16 38 H 0.05 1.13 8.14 -51.93 -0.42 0.71 16 39 H 0.08 1.85 7.01 -51.93 -0.36 1.48 16 LS Contribution 303.44 15.07 4.57 4.57 Total: -1.00 -29.47 303.44 -7.64 -37.11 By element: Atomic # 1 Polarization: 6.40 SS G_CDS: -6.71 Total: -0.31 kcal Atomic # 6 Polarization: -9.08 SS G_CDS: -0.67 Total: -9.76 kcal Atomic # 7 Polarization: -36.29 SS G_CDS: 0.11 Total: -36.18 kcal Atomic # 8 Polarization: -11.65 SS G_CDS: 0.07 Total: -11.58 kcal Atomic # 14 Polarization: 21.17 SS G_CDS: -5.02 Total: 16.14 kcal Total LS contribution 4.57 Total: 4.57 kcal Total: -29.47 -7.64 -37.11 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000397587864.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -27.508 kcal (2) G-P(sol) polarization free energy of solvation -29.469 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -56.976 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.645 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.113 kcal (6) G-S(sol) free energy of system = (1) + (5) -64.621 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds