Wall clock time and date at job start Thu Apr 9 2020 12:10:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.52999 * 109.46766 * 2 1 4 4 C 1.52996 * 109.47097 * 119.99612 * 2 1 3 5 5 C 1.50697 * 109.46997 * 239.99952 * 2 1 3 6 6 O 1.21280 * 120.00162 * 7.70110 * 5 2 1 7 7 N 1.34783 * 119.99499 * 187.70239 * 5 2 1 8 8 C 1.46918 * 120.63126 * 354.19198 * 7 5 2 9 9 C 1.53188 * 108.77817 * 233.58576 * 8 7 5 10 10 C 1.53048 * 109.31225 * 305.36661 * 9 8 7 11 11 C 1.53039 * 109.53546 * 61.36443 * 10 9 8 12 12 H 1.08997 * 109.50146 * 58.58663 * 11 10 9 13 13 C 1.50696 * 109.49666 * 178.65208 * 11 10 9 14 14 H 1.08003 * 120.00245 * 120.00022 * 13 11 10 15 15 C 1.37879 * 120.00237 * 299.99472 * 13 11 10 16 16 N 1.31518 * 119.99497 * 0.02562 * 15 13 11 17 17 Si 1.86793 * 120.00510 * 179.97438 * 15 13 11 18 18 H 1.48508 * 109.46773 * 0.02562 * 17 15 13 19 19 H 1.48494 * 109.47546 * 120.00234 * 17 15 13 20 20 H 1.48505 * 109.47352 * 240.00645 * 17 15 13 21 21 C 1.46921 * 120.62613 * 173.91098 * 7 5 2 22 22 H 1.09001 * 109.47337 * 60.00391 * 1 2 3 23 23 H 1.09001 * 109.47513 * 299.99987 * 1 2 3 24 24 H 1.09004 * 109.46833 * 180.02562 * 1 2 3 25 25 H 1.08993 * 109.47402 * 72.23483 * 3 2 1 26 26 H 1.09004 * 109.47119 * 192.23830 * 3 2 1 27 27 H 1.09005 * 109.47051 * 312.23620 * 3 2 1 28 28 H 1.08998 * 109.47019 * 70.33936 * 4 2 1 29 29 H 1.08996 * 109.47143 * 190.34376 * 4 2 1 30 30 H 1.09004 * 109.47485 * 310.34798 * 4 2 1 31 31 H 1.08997 * 109.58981 * 353.37928 * 8 7 5 32 32 H 1.09003 * 109.58450 * 113.79835 * 8 7 5 33 33 H 1.08999 * 109.49821 * 65.31701 * 9 8 7 34 34 H 1.08997 * 109.50177 * 185.38501 * 9 8 7 35 35 H 1.08999 * 109.45681 * 181.38063 * 10 9 8 36 36 H 1.08994 * 109.45698 * 301.34455 * 10 9 8 37 37 H 0.97003 * 119.99942 * 180.02562 * 16 15 13 38 38 H 1.09001 * 109.58959 * 246.19815 * 21 7 5 39 39 H 1.09003 * 109.59266 * 6.63093 * 21 7 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7211 1.2493 5 6 2.0323 -0.7104 -1.2304 6 8 1.2532 -1.0479 -2.0964 7 7 3.3476 -0.9708 -1.3685 8 6 4.3186 -0.4584 -0.3922 9 6 5.4096 0.3139 -1.1406 10 6 6.0176 -0.5860 -2.2189 11 6 4.9338 -0.9858 -3.2227 12 1 4.5033 -0.0897 -3.6696 13 6 5.5402 -1.8447 -4.3023 14 1 5.1792 -2.8504 -4.4588 15 6 6.5560 -1.3465 -5.0904 16 7 6.9959 -0.1218 -4.8995 17 14 7.3083 -2.4113 -6.4281 18 1 6.6416 -3.7383 -6.4378 19 1 7.1220 -1.7546 -7.7468 20 1 8.7589 -2.5875 -6.1634 21 6 3.8367 -1.7775 -2.4947 22 1 -0.3634 0.5138 -0.8900 23 1 -0.3634 0.5138 0.8900 24 1 -0.3633 -1.0277 0.0005 25 1 1.8655 1.8896 0.9786 26 1 3.1080 1.4504 -0.2178 27 1 1.5097 2.0153 -0.7609 28 1 1.8352 -1.7881 1.1619 29 1 3.1143 -0.5641 1.3463 30 1 1.5339 -0.3250 2.1296 31 1 3.8153 0.2073 0.3090 32 1 4.7667 -1.2915 0.1493 33 1 4.9747 1.1978 -1.6071 34 1 6.1866 0.6177 -0.4391 35 1 6.8110 -0.0470 -2.7366 36 1 6.4303 -1.4814 -1.7543 37 1 7.7103 0.2288 -5.4542 38 1 4.2464 -2.7160 -2.1213 39 1 3.0154 -1.9825 -3.1814 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000397610405.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 12:10:32 Heat of formation + Delta-G solvation = -43.305955 kcal Electronic energy + Delta-G solvation = -18368.145592 eV Core-core repulsion = 15696.472358 eV Total energy + Delta-G solvation = -2671.673234 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 239.163 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -40.22834 -36.86416 -35.62003 -33.32705 -31.28798 -30.16627 -27.34404 -27.18478 -25.08893 -24.98796 -21.74908 -21.62828 -19.36890 -18.09882 -16.52373 -15.99987 -15.61988 -14.90914 -14.56113 -14.09908 -13.83542 -13.50579 -13.15235 -12.78238 -12.71053 -12.27713 -12.15859 -11.95927 -11.94036 -11.70887 -11.55704 -11.01696 -10.92505 -10.88101 -10.71003 -10.57851 -10.18019 -9.88828 -9.72508 -9.42283 -9.09460 -8.76850 -8.37955 -7.83577 -6.01347 -4.08292 3.11727 3.28962 3.37104 3.41275 3.60443 4.43112 4.64249 4.85879 4.95034 5.25815 5.30129 5.37213 5.54534 5.59466 5.63385 5.70257 5.79311 5.84198 5.89387 5.97732 6.08870 6.19601 6.26999 6.34053 6.37328 6.43527 6.49953 6.68526 6.83853 7.01642 7.18991 7.35231 7.70123 7.93957 8.07411 8.09165 8.39067 8.71980 8.95798 9.56547 11.04116 Molecular weight = 239.16amu Principal moments of inertia in cm(-1) A = 0.041620 B = 0.006487 C = 0.006062 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 672.597392 B = 4315.546527 C = 4618.122827 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 C -0.087 4.087 3 C -0.153 4.153 4 C -0.155 4.155 5 C 0.517 3.483 6 O -0.552 6.552 7 N -0.600 5.600 8 C 0.089 3.911 9 C -0.137 4.137 10 C -0.112 4.112 11 C 0.041 3.959 12 H 0.029 0.971 13 C -0.513 4.513 14 H 0.057 0.943 15 C 0.062 3.938 16 N -0.890 5.890 17 Si 0.893 3.107 18 H -0.273 1.273 19 H -0.284 1.284 20 H -0.284 1.284 21 C 0.115 3.885 22 H 0.062 0.938 23 H 0.056 0.944 24 H 0.058 0.942 25 H 0.064 0.936 26 H 0.074 0.926 27 H 0.061 0.939 28 H 0.058 0.942 29 H 0.076 0.924 30 H 0.062 0.938 31 H 0.095 0.905 32 H 0.060 0.940 33 H 0.057 0.943 34 H 0.056 0.944 35 H 0.095 0.905 36 H 0.035 0.965 37 H 0.259 0.741 38 H 0.053 0.947 39 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.983 2.197 12.977 14.458 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.181 4.181 2 C -0.091 4.091 3 C -0.210 4.210 4 C -0.212 4.212 5 C 0.304 3.696 6 O -0.430 6.430 7 N -0.332 5.332 8 C -0.033 4.033 9 C -0.175 4.175 10 C -0.150 4.150 11 C 0.022 3.978 12 H 0.047 0.953 13 C -0.551 4.551 14 H 0.075 0.925 15 C -0.139 4.139 16 N -0.528 5.528 17 Si 0.721 3.279 18 H -0.197 1.197 19 H -0.210 1.210 20 H -0.210 1.210 21 C -0.006 4.006 22 H 0.081 0.919 23 H 0.075 0.925 24 H 0.077 0.923 25 H 0.083 0.917 26 H 0.093 0.907 27 H 0.080 0.920 28 H 0.077 0.923 29 H 0.095 0.905 30 H 0.081 0.919 31 H 0.112 0.888 32 H 0.078 0.922 33 H 0.076 0.924 34 H 0.075 0.925 35 H 0.113 0.887 36 H 0.054 0.946 37 H 0.069 0.931 38 H 0.072 0.928 39 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges -6.255 2.124 12.437 14.082 hybrid contribution 0.614 -0.520 -0.747 1.098 sum -5.641 1.604 11.690 13.078 Atomic orbital electron populations 1.21633 0.92380 1.02419 1.01690 1.20755 0.97641 0.96507 0.94160 1.22129 1.02524 0.93882 1.02484 1.22270 1.02483 1.00575 0.95887 1.20455 0.82190 0.79349 0.87565 1.90640 1.55387 1.53946 1.43032 1.48212 1.05514 1.52118 1.27331 1.22359 0.91101 0.98287 0.91578 1.22039 0.96945 0.99474 0.99054 1.21624 1.01281 0.97446 0.94655 1.19041 0.90647 0.95561 0.92592 0.95267 1.21134 1.18323 0.99933 1.15748 0.92471 1.24942 0.96678 0.95002 0.97252 1.69886 1.28305 1.15079 1.39575 0.86526 0.78917 0.80695 0.81811 1.19741 1.21029 1.21044 1.22075 0.98532 0.93165 0.86782 0.91886 0.92477 0.92338 0.91688 0.90712 0.91969 0.92300 0.90521 0.91894 0.88759 0.92197 0.92387 0.92512 0.88664 0.94645 0.93058 0.92825 0.90416 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.57 7.75 37.16 0.29 -1.28 16 2 C -0.09 -1.19 0.75 -155.66 -0.12 -1.30 16 3 C -0.15 -1.84 8.10 37.16 0.30 -1.54 16 4 C -0.16 -1.71 7.97 37.16 0.30 -1.42 16 5 C 0.52 9.61 6.45 -10.98 -0.07 9.54 16 6 O -0.55 -12.35 15.40 5.56 0.09 -12.27 16 7 N -0.60 -11.29 2.95 -172.51 -0.51 -11.80 16 8 C 0.09 1.38 3.98 -3.72 -0.01 1.37 16 9 C -0.14 -2.43 5.92 -26.61 -0.16 -2.59 16 10 C -0.11 -2.52 4.96 -26.69 -0.13 -2.65 16 11 C 0.04 1.01 2.26 -91.42 -0.21 0.81 16 12 H 0.03 0.82 8.14 -51.93 -0.42 0.40 16 13 C -0.51 -14.04 8.57 -34.44 -0.30 -14.33 16 14 H 0.06 1.55 7.74 -52.48 -0.41 1.15 16 15 C 0.06 1.72 5.30 -17.82 -0.09 1.62 16 16 N -0.89 -25.13 11.31 55.43 0.63 -24.50 16 17 Si 0.89 21.25 29.54 -169.99 -5.02 16.23 16 18 H -0.27 -6.43 7.11 56.52 0.40 -6.03 16 19 H -0.28 -6.77 7.11 56.52 0.40 -6.37 16 20 H -0.28 -6.68 7.11 56.52 0.40 -6.28 16 21 C 0.12 2.55 5.70 -3.48 -0.02 2.53 16 22 H 0.06 0.87 8.02 -51.93 -0.42 0.46 16 23 H 0.06 0.57 8.14 -51.93 -0.42 0.14 16 24 H 0.06 0.78 8.14 -51.93 -0.42 0.35 16 25 H 0.06 0.61 8.09 -51.93 -0.42 0.19 16 26 H 0.07 0.95 4.97 -51.93 -0.26 0.69 16 27 H 0.06 0.78 8.09 -51.93 -0.42 0.36 16 28 H 0.06 0.69 8.10 -51.93 -0.42 0.27 16 29 H 0.08 0.80 4.71 -51.93 -0.24 0.55 16 30 H 0.06 0.56 8.11 -51.93 -0.42 0.14 16 31 H 0.09 1.19 2.56 -51.93 -0.13 1.06 16 32 H 0.06 0.87 8.13 -51.93 -0.42 0.45 16 33 H 0.06 1.08 8.00 -51.93 -0.42 0.66 16 34 H 0.06 0.87 8.14 -51.93 -0.42 0.44 16 35 H 0.10 2.43 6.04 -51.93 -0.31 2.12 16 36 H 0.03 0.78 8.14 -51.93 -0.42 0.36 16 37 H 0.26 6.99 8.31 -40.82 -0.34 6.65 16 38 H 0.05 1.15 8.14 -51.93 -0.42 0.72 16 39 H 0.08 1.86 7.00 -51.93 -0.36 1.50 16 LS Contribution 294.93 15.07 4.44 4.44 Total: -1.00 -30.25 294.93 -6.92 -37.18 By element: Atomic # 1 Polarization: 6.29 SS G_CDS: -6.33 Total: -0.03 kcal Atomic # 6 Polarization: -9.02 SS G_CDS: -0.22 Total: -9.25 kcal Atomic # 7 Polarization: -36.42 SS G_CDS: 0.12 Total: -36.30 kcal Atomic # 8 Polarization: -12.35 SS G_CDS: 0.09 Total: -12.27 kcal Atomic # 14 Polarization: 21.25 SS G_CDS: -5.02 Total: 16.23 kcal Total LS contribution 4.44 Total: 4.44 kcal Total: -30.25 -6.92 -37.18 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000397610405.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -6.130 kcal (2) G-P(sol) polarization free energy of solvation -30.254 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -36.384 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.922 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.176 kcal (6) G-S(sol) free energy of system = (1) + (5) -43.306 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds