Wall clock time and date at job start Thu Apr 9 2020 12:10:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.52999 * 109.46766 * 2 1 4 4 C 1.52996 * 109.47097 * 119.99612 * 2 1 3 5 5 C 1.50697 * 109.46997 * 239.99952 * 2 1 3 6 6 O 1.21280 * 120.00162 * 7.70110 * 5 2 1 7 7 N 1.34783 * 119.99499 * 187.70239 * 5 2 1 8 8 C 1.46918 * 120.63126 * 354.19198 * 7 5 2 9 9 C 1.53188 * 108.77817 * 233.58576 * 8 7 5 10 10 C 1.53048 * 109.31225 * 305.36661 * 9 8 7 11 11 C 1.53039 * 109.53546 * 61.36443 * 10 9 8 12 12 H 1.08997 * 109.50146 * 58.58663 * 11 10 9 13 13 C 1.50696 * 109.49666 * 178.65208 * 11 10 9 14 14 H 1.08003 * 120.00245 * 120.00022 * 13 11 10 15 15 C 1.37879 * 120.00237 * 299.99472 * 13 11 10 16 16 N 1.31518 * 119.99497 * 0.02562 * 15 13 11 17 17 Si 1.86793 * 120.00510 * 179.97438 * 15 13 11 18 18 H 1.48508 * 109.46773 * 0.02562 * 17 15 13 19 19 H 1.48494 * 109.47546 * 120.00234 * 17 15 13 20 20 H 1.48505 * 109.47352 * 240.00645 * 17 15 13 21 21 C 1.46921 * 120.62613 * 173.91098 * 7 5 2 22 22 H 1.09001 * 109.47337 * 60.00391 * 1 2 3 23 23 H 1.09001 * 109.47513 * 299.99987 * 1 2 3 24 24 H 1.09004 * 109.46833 * 180.02562 * 1 2 3 25 25 H 1.08993 * 109.47402 * 72.23483 * 3 2 1 26 26 H 1.09004 * 109.47119 * 192.23830 * 3 2 1 27 27 H 1.09005 * 109.47051 * 312.23620 * 3 2 1 28 28 H 1.08998 * 109.47019 * 70.33936 * 4 2 1 29 29 H 1.08996 * 109.47143 * 190.34376 * 4 2 1 30 30 H 1.09004 * 109.47485 * 310.34798 * 4 2 1 31 31 H 1.08997 * 109.58981 * 353.37928 * 8 7 5 32 32 H 1.09003 * 109.58450 * 113.79835 * 8 7 5 33 33 H 1.08999 * 109.49821 * 65.31701 * 9 8 7 34 34 H 1.08997 * 109.50177 * 185.38501 * 9 8 7 35 35 H 1.08999 * 109.45681 * 181.38063 * 10 9 8 36 36 H 1.08994 * 109.45698 * 301.34455 * 10 9 8 37 37 H 0.97003 * 119.99942 * 180.02562 * 16 15 13 38 38 H 1.09001 * 109.58959 * 246.19815 * 21 7 5 39 39 H 1.09003 * 109.59266 * 6.63093 * 21 7 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7211 1.2493 5 6 2.0323 -0.7104 -1.2304 6 8 1.2532 -1.0479 -2.0964 7 7 3.3476 -0.9708 -1.3685 8 6 4.3186 -0.4584 -0.3922 9 6 5.4096 0.3139 -1.1406 10 6 6.0176 -0.5860 -2.2189 11 6 4.9338 -0.9858 -3.2227 12 1 4.5033 -0.0897 -3.6696 13 6 5.5402 -1.8447 -4.3023 14 1 5.1792 -2.8504 -4.4588 15 6 6.5560 -1.3465 -5.0904 16 7 6.9959 -0.1218 -4.8995 17 14 7.3083 -2.4113 -6.4281 18 1 6.6416 -3.7383 -6.4378 19 1 7.1220 -1.7546 -7.7468 20 1 8.7589 -2.5875 -6.1634 21 6 3.8367 -1.7775 -2.4947 22 1 -0.3634 0.5138 -0.8900 23 1 -0.3634 0.5138 0.8900 24 1 -0.3633 -1.0277 0.0005 25 1 1.8655 1.8896 0.9786 26 1 3.1080 1.4504 -0.2178 27 1 1.5097 2.0153 -0.7609 28 1 1.8352 -1.7881 1.1619 29 1 3.1143 -0.5641 1.3463 30 1 1.5339 -0.3250 2.1296 31 1 3.8153 0.2073 0.3090 32 1 4.7667 -1.2915 0.1493 33 1 4.9747 1.1978 -1.6071 34 1 6.1866 0.6177 -0.4391 35 1 6.8110 -0.0470 -2.7366 36 1 6.4303 -1.4814 -1.7543 37 1 7.7103 0.2288 -5.4542 38 1 4.2464 -2.7160 -2.1213 39 1 3.0154 -1.9825 -3.1814 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000397610405.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 12:10:32 Heat of formation + Delta-G solvation = -61.791879 kcal Electronic energy + Delta-G solvation = -18368.947202 eV Core-core repulsion = 15696.472358 eV Total energy + Delta-G solvation = -2672.474844 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 239.163 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -41.63877 -38.49873 -36.89853 -35.20152 -32.98892 -31.93229 -28.28716 -28.22412 -26.94284 -26.57558 -23.38946 -23.08396 -20.98138 -19.57423 -18.44487 -17.50463 -16.98414 -16.65555 -16.12769 -15.43858 -15.29607 -14.93030 -14.62692 -14.53208 -14.18478 -13.62674 -13.54817 -13.19370 -13.05715 -12.91097 -12.87336 -12.67092 -12.54701 -12.49957 -12.05711 -11.88485 -11.85998 -11.72811 -11.40542 -11.10581 -10.84971 -10.52444 -10.36456 -9.46630 -8.12334 -6.27884 1.38240 1.40337 1.51839 1.68000 2.14621 2.42681 3.13763 3.45875 3.86863 3.94620 4.06003 4.22450 4.25596 4.38498 4.51895 4.58149 4.69124 4.74344 4.77689 4.81845 4.85260 4.94315 4.95992 4.97902 5.08104 5.11672 5.23639 5.27308 5.37652 5.42512 5.49382 5.58323 5.59978 5.91985 6.12577 6.33224 6.60351 6.81797 7.24863 7.40330 8.91398 Molecular weight = 239.16amu Principal moments of inertia in cm(-1) A = 0.041620 B = 0.006487 C = 0.006062 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 672.597392 B = 4315.546527 C = 4618.122827 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 C -0.082 4.082 3 C -0.152 4.152 4 C -0.151 4.151 5 C 0.505 3.495 6 O -0.601 6.601 7 N -0.604 5.604 8 C 0.090 3.910 9 C -0.130 4.130 10 C -0.106 4.106 11 C 0.042 3.958 12 H -0.017 1.017 13 C -0.539 4.539 14 H 0.051 0.949 15 C 0.016 3.984 16 N -0.913 5.913 17 Si 0.956 3.044 18 H -0.270 1.270 19 H -0.283 1.283 20 H -0.274 1.274 21 C 0.127 3.873 22 H 0.041 0.959 23 H 0.095 0.905 24 H 0.046 0.954 25 H 0.105 0.895 26 H 0.068 0.932 27 H 0.048 0.952 28 H 0.048 0.952 29 H 0.086 0.914 30 H 0.097 0.903 31 H 0.134 0.866 32 H 0.081 0.919 33 H 0.044 0.956 34 H 0.092 0.908 35 H 0.062 0.938 36 H 0.038 0.962 37 H 0.262 0.738 38 H 0.061 0.939 39 H 0.048 0.952 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.744 2.504 15.752 16.952 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C -0.085 4.085 3 C -0.209 4.209 4 C -0.208 4.208 5 C 0.295 3.705 6 O -0.483 6.483 7 N -0.335 5.335 8 C -0.031 4.031 9 C -0.168 4.168 10 C -0.144 4.144 11 C 0.023 3.977 12 H 0.001 0.999 13 C -0.577 4.577 14 H 0.069 0.931 15 C -0.183 4.183 16 N -0.553 5.553 17 Si 0.782 3.218 18 H -0.194 1.194 19 H -0.208 1.208 20 H -0.199 1.199 21 C 0.004 3.996 22 H 0.060 0.940 23 H 0.114 0.886 24 H 0.065 0.935 25 H 0.124 0.876 26 H 0.087 0.913 27 H 0.068 0.932 28 H 0.067 0.933 29 H 0.105 0.895 30 H 0.115 0.885 31 H 0.151 0.849 32 H 0.099 0.901 33 H 0.062 0.938 34 H 0.111 0.889 35 H 0.081 0.919 36 H 0.056 0.944 37 H 0.071 0.929 38 H 0.080 0.920 39 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges -6.005 2.442 15.243 16.564 hybrid contribution 0.509 -0.597 -1.654 1.831 sum -5.496 1.846 13.589 14.774 Atomic orbital electron populations 1.21655 0.91817 1.01982 1.02521 1.20855 0.98095 0.97095 0.92442 1.22160 1.01703 0.92551 1.04458 1.22282 1.03362 0.99816 0.95360 1.21610 0.81501 0.78633 0.88752 1.90610 1.56552 1.55905 1.45248 1.48302 1.06592 1.51740 1.26838 1.22659 0.90012 0.99441 0.90955 1.21963 0.98424 0.98080 0.98334 1.21421 0.99600 0.98078 0.95282 1.18939 0.91994 0.93645 0.93113 0.99852 1.21479 1.18899 1.00111 1.17210 0.93115 1.25704 0.97036 0.96228 0.99307 1.70018 1.28584 1.16343 1.40325 0.85534 0.78383 0.79026 0.78877 1.19395 1.20850 1.19945 1.21635 0.96581 0.93671 0.87664 0.93988 0.88640 0.93483 0.87632 0.91342 0.93242 0.93268 0.89519 0.88458 0.84912 0.90068 0.93766 0.88943 0.91911 0.94368 0.92897 0.92033 0.93382 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.86 7.75 71.98 0.56 -2.30 16 2 C -0.08 -2.02 0.75 -52.93 -0.04 -2.05 16 3 C -0.15 -3.13 8.10 71.98 0.58 -2.55 16 4 C -0.15 -2.68 7.97 71.98 0.57 -2.10 16 5 C 0.51 18.73 6.45 87.66 0.57 19.29 16 6 O -0.60 -28.03 15.40 -3.03 -0.05 -28.08 16 7 N -0.60 -22.55 2.95 -818.08 -2.41 -24.96 16 8 C 0.09 2.55 3.98 86.36 0.34 2.89 16 9 C -0.13 -4.40 5.92 30.67 0.18 -4.22 16 10 C -0.11 -4.81 4.96 30.62 0.15 -4.66 16 11 C 0.04 2.20 2.26 -11.32 -0.03 2.17 16 12 H -0.02 -1.00 8.14 -2.39 -0.02 -1.02 16 13 C -0.54 -30.58 8.57 25.60 0.22 -30.36 16 14 H 0.05 2.86 7.74 -2.91 -0.02 2.84 16 15 C 0.02 0.91 5.30 84.65 0.45 1.36 16 16 N -0.91 -52.98 11.31 21.45 0.24 -52.74 16 17 Si 0.96 44.27 29.54 68.60 2.03 46.30 16 18 H -0.27 -12.23 7.11 99.48 0.71 -11.52 16 19 H -0.28 -12.94 7.11 99.48 0.71 -12.23 16 20 H -0.27 -12.18 7.11 99.48 0.71 -11.47 16 21 C 0.13 5.83 5.70 86.51 0.49 6.32 16 22 H 0.04 1.14 8.02 -2.39 -0.02 1.12 16 23 H 0.09 1.50 8.14 -2.39 -0.02 1.48 16 24 H 0.05 1.19 8.14 -2.38 -0.02 1.17 16 25 H 0.10 1.37 8.09 -2.39 -0.02 1.35 16 26 H 0.07 1.51 4.97 -2.39 -0.01 1.49 16 27 H 0.05 1.15 8.09 -2.38 -0.02 1.13 16 28 H 0.05 0.99 8.10 -2.39 -0.02 0.97 16 29 H 0.09 1.35 4.71 -2.39 -0.01 1.34 16 30 H 0.10 1.13 8.11 -2.38 -0.02 1.11 16 31 H 0.13 2.79 2.56 -2.39 -0.01 2.78 16 32 H 0.08 2.03 8.13 -2.39 -0.02 2.01 16 33 H 0.04 1.62 8.00 -2.39 -0.02 1.60 16 34 H 0.09 2.51 8.14 -2.39 -0.02 2.49 16 35 H 0.06 3.28 6.04 -2.39 -0.01 3.26 16 36 H 0.04 1.67 8.14 -2.39 -0.02 1.65 16 37 H 0.26 14.35 8.31 -92.71 -0.77 13.58 16 38 H 0.06 2.69 8.14 -2.39 -0.02 2.67 16 39 H 0.05 2.45 7.00 -2.39 -0.02 2.43 16 Total: -1.00 -70.34 294.93 4.88 -65.46 By element: Atomic # 1 Polarization: 9.21 SS G_CDS: 1.02 Total: 10.23 kcal Atomic # 6 Polarization: -20.26 SS G_CDS: 4.05 Total: -16.21 kcal Atomic # 7 Polarization: -75.53 SS G_CDS: -2.17 Total: -77.71 kcal Atomic # 8 Polarization: -28.03 SS G_CDS: -0.05 Total: -28.08 kcal Atomic # 14 Polarization: 44.27 SS G_CDS: 2.03 Total: 46.30 kcal Total: -70.34 4.88 -65.46 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000397610405.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 3.672 kcal (2) G-P(sol) polarization free energy of solvation -70.340 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -66.668 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.877 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.464 kcal (6) G-S(sol) free energy of system = (1) + (5) -61.792 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds