Wall clock time and date at job start Thu Apr 9 2020 12:10:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53001 * 109.47047 * 2 1 4 4 C 1.52997 * 109.47055 * 119.99826 * 2 1 3 5 5 C 1.53004 * 109.47185 * 175.00058 * 4 2 1 6 6 C 1.50693 * 109.47428 * 180.02562 * 5 4 2 7 7 O 1.21284 * 119.99818 * 5.62996 * 6 5 4 8 8 N 1.34781 * 120.00227 * 185.63807 * 6 5 4 9 9 C 1.46492 * 120.00065 * 185.07332 * 8 6 5 10 10 C 1.53000 * 109.47112 * 183.82356 * 9 8 6 11 11 C 1.50703 * 115.55331 * 294.93683 * 10 9 8 12 12 H 1.07994 * 119.99679 * 114.84102 * 11 10 9 13 13 C 1.37883 * 119.99414 * 294.56871 * 11 10 9 14 14 N 1.31509 * 119.99487 * 174.42446 * 13 11 10 15 15 Si 1.86795 * 120.00216 * 354.42653 * 13 11 10 16 16 H 1.48502 * 109.47018 * 93.11405 * 15 13 11 17 17 H 1.48504 * 109.46991 * 213.11178 * 15 13 11 18 18 H 1.48499 * 109.47148 * 333.11176 * 15 13 11 19 19 C 1.53005 * 117.49613 * 80.60308 * 10 9 8 20 20 C 1.53001 * 117.49959 * 149.26552 * 10 9 8 21 21 H 1.09007 * 109.46897 * 299.99874 * 1 2 3 22 22 H 1.08998 * 109.47294 * 59.99890 * 1 2 3 23 23 H 1.09003 * 109.47173 * 180.02562 * 1 2 3 24 24 H 1.08996 * 109.47374 * 240.00054 * 2 1 3 25 25 H 1.08999 * 109.47625 * 179.97438 * 3 2 1 26 26 H 1.08998 * 109.47163 * 300.00190 * 3 2 1 27 27 H 1.09000 * 109.47440 * 60.00000 * 3 2 1 28 28 H 1.08998 * 109.47468 * 55.00231 * 4 2 1 29 29 H 1.08998 * 109.47628 * 295.00007 * 4 2 1 30 30 H 1.09007 * 109.46862 * 59.99908 * 5 4 2 31 31 H 1.08998 * 109.46796 * 300.00459 * 5 4 2 32 32 H 0.97007 * 119.99650 * 5.06716 * 8 6 5 33 33 H 1.09003 * 109.47678 * 63.82648 * 9 8 6 34 34 H 1.09001 * 109.47507 * 303.82093 * 9 8 6 35 35 H 0.96998 * 120.00070 * 180.02562 * 14 13 11 36 36 H 1.09002 * 117.49847 * 215.00206 * 19 10 9 37 37 H 1.08997 * 117.49813 * 0.02562 * 19 10 9 38 38 H 1.09003 * 117.49800 * 359.97378 * 20 10 9 39 39 H 1.08995 * 117.50224 * 144.97624 * 20 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0399 -0.7212 1.2492 5 6 3.5648 -0.8310 1.1880 6 6 4.0671 -1.5419 2.4181 7 8 3.2790 -2.0131 3.2104 8 7 5.3922 -1.6539 2.6379 9 6 5.8825 -2.4394 3.7731 10 6 7.4064 -2.3269 3.8508 11 6 8.1624 -2.9250 2.6925 12 1 8.7385 -2.2885 2.0374 13 6 8.1229 -4.2857 2.4725 14 7 8.6905 -4.7952 1.4013 15 14 7.2630 -5.4050 3.6961 16 1 5.8552 -5.6132 3.2720 17 1 7.9634 -6.7136 3.7467 18 1 7.2871 -4.7783 5.0421 19 6 7.9896 -1.0712 4.5021 20 6 8.0514 -2.4135 5.2355 21 1 -0.3633 0.5138 0.8901 22 1 -0.3634 0.5138 -0.8899 23 1 -0.3634 -1.0277 0.0005 24 1 1.8933 -0.5138 -0.8899 25 1 3.1300 1.4426 0.0005 26 1 1.6766 1.9564 -0.8899 27 1 1.6767 1.9564 0.8900 28 1 1.6054 -1.7198 1.2952 29 1 1.7516 -0.1583 2.1370 30 1 3.9994 0.1676 1.1421 31 1 3.8531 -1.3939 0.3003 32 1 6.0211 -1.2144 2.0444 33 1 5.6017 -3.4843 3.6403 34 1 5.4426 -2.0593 4.6951 35 1 8.6625 -5.7523 1.2463 36 1 8.9201 -0.6778 4.0927 37 1 7.2877 -0.3256 4.8755 38 1 7.3901 -2.5502 6.0912 39 1 9.0223 -2.9034 5.3088 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000404141163.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 12:10:52 Heat of formation + Delta-G solvation = -44.234205 kcal Electronic energy + Delta-G solvation = -17264.992529 eV Core-core repulsion = 14593.279043 eV Total energy + Delta-G solvation = -2671.713486 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 239.163 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -39.29763 -37.20124 -36.37758 -33.35249 -32.19911 -30.87912 -27.25431 -26.96814 -25.38574 -23.60580 -21.64292 -20.01849 -19.71146 -19.09775 -16.86577 -16.24207 -15.63318 -15.17860 -15.00180 -14.52888 -14.11030 -13.67703 -13.55405 -12.97989 -12.86026 -12.61513 -12.33141 -12.21320 -12.04302 -11.74183 -11.26459 -11.08963 -10.81107 -10.72329 -10.65703 -10.60607 -10.51976 -10.26896 -9.64122 -9.32116 -9.14779 -8.79161 -8.51156 -8.26021 -6.19318 -4.22107 3.16143 3.27928 3.37731 3.43776 3.79385 4.37752 4.76481 4.83507 4.85740 4.93988 5.17889 5.27984 5.36584 5.48598 5.53832 5.64888 5.68073 5.72571 5.79252 5.87655 5.96551 6.03251 6.04509 6.12646 6.15948 6.23971 6.35449 6.42783 6.43869 6.52750 6.70037 6.94340 7.06158 7.18457 7.65853 8.21850 8.39465 8.80689 8.83058 9.44467 10.91684 Molecular weight = 239.16amu Principal moments of inertia in cm(-1) A = 0.029088 B = 0.005604 C = 0.005358 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 962.362424 B = 4995.111043 C = 5224.231359 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.099 4.099 3 C -0.150 4.150 4 C -0.097 4.097 5 C -0.142 4.142 6 C 0.504 3.496 7 O -0.562 6.562 8 N -0.703 5.703 9 C 0.153 3.847 10 C -0.018 4.018 11 C -0.490 4.490 12 H 0.078 0.922 13 C 0.084 3.916 14 N -0.893 5.893 15 Si 0.866 3.134 16 H -0.278 1.278 17 H -0.291 1.291 18 H -0.249 1.249 19 C -0.180 4.180 20 C -0.185 4.185 21 H 0.053 0.947 22 H 0.052 0.948 23 H 0.054 0.946 24 H 0.070 0.930 25 H 0.058 0.942 26 H 0.051 0.949 27 H 0.053 0.947 28 H 0.069 0.931 29 H 0.066 0.934 30 H 0.089 0.911 31 H 0.093 0.907 32 H 0.406 0.594 33 H 0.055 0.945 34 H 0.048 0.952 35 H 0.266 0.734 36 H 0.085 0.915 37 H 0.072 0.928 38 H 0.070 0.930 39 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.524 9.697 -1.478 14.386 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.118 4.118 3 C -0.207 4.207 4 C -0.135 4.135 5 C -0.182 4.182 6 C 0.290 3.710 7 O -0.442 6.442 8 N -0.353 5.353 9 C 0.029 3.971 10 C -0.020 4.020 11 C -0.527 4.527 12 H 0.096 0.904 13 C -0.120 4.120 14 N -0.529 5.529 15 Si 0.693 3.307 16 H -0.204 1.204 17 H -0.218 1.218 18 H -0.172 1.172 19 C -0.217 4.217 20 C -0.223 4.223 21 H 0.072 0.928 22 H 0.071 0.929 23 H 0.073 0.927 24 H 0.089 0.911 25 H 0.077 0.923 26 H 0.070 0.930 27 H 0.072 0.928 28 H 0.088 0.912 29 H 0.085 0.915 30 H 0.108 0.892 31 H 0.111 0.889 32 H 0.241 0.759 33 H 0.074 0.926 34 H 0.066 0.934 35 H 0.075 0.925 36 H 0.104 0.896 37 H 0.091 0.909 38 H 0.089 0.911 39 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges -11.016 9.165 -1.020 14.366 hybrid contribution 0.020 -0.623 0.277 0.682 sum -10.996 8.541 -0.743 13.943 Atomic orbital electron populations 1.21823 0.95347 1.01726 1.01461 1.21159 0.95682 0.96369 0.98579 1.21911 1.01340 0.96005 1.01475 1.21380 0.93333 1.01365 0.97462 1.21730 0.97654 1.01677 0.97138 1.20689 0.82565 0.80312 0.87438 1.90639 1.55629 1.50084 1.47811 1.45892 1.06403 1.52004 1.30989 1.21057 0.94149 0.94582 0.87282 1.19626 0.90245 0.98560 0.93525 1.20230 1.29902 0.92559 1.09982 0.90416 1.24908 0.94382 0.98053 0.94657 1.69888 1.44225 1.12947 1.25859 0.87036 0.79566 0.80171 0.83904 1.20438 1.21794 1.17211 1.22798 1.02353 0.90718 1.05875 1.23030 1.02491 1.00701 0.96116 0.92751 0.92930 0.92688 0.91143 0.92294 0.92990 0.92755 0.91213 0.91511 0.89219 0.88851 0.75876 0.92648 0.93381 0.92456 0.89617 0.90934 0.91136 0.89300 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.34 9.19 37.16 0.34 -1.00 16 2 C -0.10 -1.00 2.92 -90.62 -0.26 -1.26 16 3 C -0.15 -1.36 8.95 37.16 0.33 -1.02 16 4 C -0.10 -1.23 3.99 -26.73 -0.11 -1.34 16 5 C -0.14 -1.91 5.46 -27.88 -0.15 -2.06 16 6 C 0.50 9.24 7.82 -10.99 -0.09 9.16 16 7 O -0.56 -12.25 15.98 5.55 0.09 -12.16 16 8 N -0.70 -13.49 5.48 -60.30 -0.33 -13.82 16 9 C 0.15 3.32 5.15 -4.05 -0.02 3.29 16 10 C -0.02 -0.41 0.84 -155.66 -0.13 -0.54 16 11 C -0.49 -12.80 9.16 -34.44 -0.32 -13.12 16 12 H 0.08 2.19 8.06 -52.49 -0.42 1.77 16 13 C 0.08 2.30 5.47 -17.82 -0.10 2.21 16 14 N -0.89 -26.21 13.96 55.43 0.77 -25.44 16 15 Si 0.87 21.32 24.97 -169.99 -4.25 17.07 16 16 H -0.28 -7.01 7.02 56.52 0.40 -6.61 16 17 H -0.29 -7.20 7.11 56.52 0.40 -6.80 16 18 H -0.25 -5.76 5.73 56.52 0.32 -5.44 16 19 C -0.18 -3.46 9.96 -26.69 -0.27 -3.73 16 20 C -0.19 -3.79 8.03 -26.69 -0.21 -4.01 16 21 H 0.05 0.49 8.14 -51.93 -0.42 0.07 16 22 H 0.05 0.42 8.14 -51.93 -0.42 0.00 16 23 H 0.05 0.51 8.14 -51.93 -0.42 0.08 16 24 H 0.07 0.69 8.14 -51.93 -0.42 0.27 16 25 H 0.06 0.52 6.56 -51.93 -0.34 0.18 16 26 H 0.05 0.42 8.14 -51.93 -0.42 0.00 16 27 H 0.05 0.49 8.14 -51.93 -0.42 0.07 16 28 H 0.07 0.98 8.04 -51.93 -0.42 0.56 16 29 H 0.07 0.89 8.14 -51.93 -0.42 0.47 16 30 H 0.09 1.01 6.56 -51.92 -0.34 0.67 16 31 H 0.09 1.18 8.14 -51.93 -0.42 0.76 16 32 H 0.41 7.21 8.34 -40.82 -0.34 6.87 16 33 H 0.06 1.33 5.05 -51.93 -0.26 1.07 16 34 H 0.05 1.01 8.07 -51.93 -0.42 0.59 16 35 H 0.27 7.41 8.31 -40.82 -0.34 7.07 16 36 H 0.09 1.63 8.14 -51.93 -0.42 1.20 16 37 H 0.07 1.26 8.14 -51.93 -0.42 0.84 16 38 H 0.07 1.34 8.14 -51.93 -0.42 0.92 16 39 H 0.09 1.86 8.14 -51.93 -0.42 1.44 16 LS Contribution 313.87 15.07 4.73 4.73 Total: -1.00 -30.20 313.87 -6.80 -37.00 By element: Atomic # 1 Polarization: 12.87 SS G_CDS: -6.83 Total: 6.03 kcal Atomic # 6 Polarization: -12.43 SS G_CDS: -0.98 Total: -13.41 kcal Atomic # 7 Polarization: -39.70 SS G_CDS: 0.44 Total: -39.26 kcal Atomic # 8 Polarization: -12.25 SS G_CDS: 0.09 Total: -12.16 kcal Atomic # 14 Polarization: 21.32 SS G_CDS: -4.25 Total: 17.07 kcal Total LS contribution 4.73 Total: 4.73 kcal Total: -30.20 -6.80 -37.00 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000404141163.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -7.239 kcal (2) G-P(sol) polarization free energy of solvation -30.197 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -37.436 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.798 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.995 kcal (6) G-S(sol) free energy of system = (1) + (5) -44.234 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds