Wall clock time and date at job start Thu Apr 9 2020 12:10:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53001 * 109.47047 * 2 1 4 4 C 1.52997 * 109.47055 * 119.99826 * 2 1 3 5 5 C 1.53004 * 109.47185 * 175.00058 * 4 2 1 6 6 C 1.50693 * 109.47428 * 180.02562 * 5 4 2 7 7 O 1.21284 * 119.99818 * 5.62996 * 6 5 4 8 8 N 1.34781 * 120.00227 * 185.63807 * 6 5 4 9 9 C 1.46492 * 120.00065 * 185.07332 * 8 6 5 10 10 C 1.53000 * 109.47112 * 183.82356 * 9 8 6 11 11 C 1.50703 * 115.55331 * 294.93683 * 10 9 8 12 12 H 1.07994 * 119.99679 * 114.84102 * 11 10 9 13 13 C 1.37883 * 119.99414 * 294.56871 * 11 10 9 14 14 N 1.31509 * 119.99487 * 174.42446 * 13 11 10 15 15 Si 1.86795 * 120.00216 * 354.42653 * 13 11 10 16 16 H 1.48502 * 109.47018 * 93.11405 * 15 13 11 17 17 H 1.48504 * 109.46991 * 213.11178 * 15 13 11 18 18 H 1.48499 * 109.47148 * 333.11176 * 15 13 11 19 19 C 1.53005 * 117.49613 * 80.60308 * 10 9 8 20 20 C 1.53001 * 117.49959 * 149.26552 * 10 9 8 21 21 H 1.09007 * 109.46897 * 299.99874 * 1 2 3 22 22 H 1.08998 * 109.47294 * 59.99890 * 1 2 3 23 23 H 1.09003 * 109.47173 * 180.02562 * 1 2 3 24 24 H 1.08996 * 109.47374 * 240.00054 * 2 1 3 25 25 H 1.08999 * 109.47625 * 179.97438 * 3 2 1 26 26 H 1.08998 * 109.47163 * 300.00190 * 3 2 1 27 27 H 1.09000 * 109.47440 * 60.00000 * 3 2 1 28 28 H 1.08998 * 109.47468 * 55.00231 * 4 2 1 29 29 H 1.08998 * 109.47628 * 295.00007 * 4 2 1 30 30 H 1.09007 * 109.46862 * 59.99908 * 5 4 2 31 31 H 1.08998 * 109.46796 * 300.00459 * 5 4 2 32 32 H 0.97007 * 119.99650 * 5.06716 * 8 6 5 33 33 H 1.09003 * 109.47678 * 63.82648 * 9 8 6 34 34 H 1.09001 * 109.47507 * 303.82093 * 9 8 6 35 35 H 0.96998 * 120.00070 * 180.02562 * 14 13 11 36 36 H 1.09002 * 117.49847 * 215.00206 * 19 10 9 37 37 H 1.08997 * 117.49813 * 0.02562 * 19 10 9 38 38 H 1.09003 * 117.49800 * 359.97378 * 20 10 9 39 39 H 1.08995 * 117.50224 * 144.97624 * 20 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0399 -0.7212 1.2492 5 6 3.5648 -0.8310 1.1880 6 6 4.0671 -1.5419 2.4181 7 8 3.2790 -2.0131 3.2104 8 7 5.3922 -1.6539 2.6379 9 6 5.8825 -2.4394 3.7731 10 6 7.4064 -2.3269 3.8508 11 6 8.1624 -2.9250 2.6925 12 1 8.7385 -2.2885 2.0374 13 6 8.1229 -4.2857 2.4725 14 7 8.6905 -4.7952 1.4013 15 14 7.2630 -5.4050 3.6961 16 1 5.8552 -5.6132 3.2720 17 1 7.9634 -6.7136 3.7467 18 1 7.2871 -4.7783 5.0421 19 6 7.9896 -1.0712 4.5021 20 6 8.0514 -2.4135 5.2355 21 1 -0.3633 0.5138 0.8901 22 1 -0.3634 0.5138 -0.8899 23 1 -0.3634 -1.0277 0.0005 24 1 1.8933 -0.5138 -0.8899 25 1 3.1300 1.4426 0.0005 26 1 1.6766 1.9564 -0.8899 27 1 1.6767 1.9564 0.8900 28 1 1.6054 -1.7198 1.2952 29 1 1.7516 -0.1583 2.1370 30 1 3.9994 0.1676 1.1421 31 1 3.8531 -1.3939 0.3003 32 1 6.0211 -1.2144 2.0444 33 1 5.6017 -3.4843 3.6403 34 1 5.4426 -2.0593 4.6951 35 1 8.6625 -5.7523 1.2463 36 1 8.9201 -0.6778 4.0927 37 1 7.2877 -0.3256 4.8755 38 1 7.3901 -2.5502 6.0912 39 1 9.0223 -2.9034 5.3088 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000404141163.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 12:10:51 Heat of formation + Delta-G solvation = -63.327507 kcal Electronic energy + Delta-G solvation = -17265.820477 eV Core-core repulsion = 14593.279043 eV Total energy + Delta-G solvation = -2672.541434 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 239.163 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -40.78361 -38.79072 -37.39409 -34.94852 -34.27889 -31.95438 -28.62989 -27.95696 -27.22423 -24.81515 -23.23936 -21.35093 -20.93663 -20.68077 -18.63661 -17.75328 -17.10921 -16.72245 -16.57038 -15.74652 -15.44178 -15.02054 -14.84573 -14.65121 -14.23605 -14.11873 -13.80043 -13.42954 -13.04249 -13.01049 -12.70146 -12.59624 -12.20541 -12.19834 -12.09318 -11.65466 -11.50220 -11.47302 -11.42083 -11.04055 -10.87414 -10.70496 -10.31804 -9.88993 -8.32565 -6.35972 1.29910 1.36644 1.46631 1.71538 2.32507 2.35873 2.99381 3.34093 3.82796 3.92360 4.01297 4.02127 4.24529 4.30607 4.39006 4.46234 4.52374 4.58500 4.68165 4.81015 4.84393 4.90784 4.92128 4.98277 5.06955 5.09401 5.17992 5.22711 5.26578 5.34763 5.49688 5.52225 5.56137 5.61117 5.68432 6.28747 6.67939 6.76739 7.32523 7.35274 8.81731 Molecular weight = 239.16amu Principal moments of inertia in cm(-1) A = 0.029088 B = 0.005604 C = 0.005358 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 962.362424 B = 4995.111043 C = 5224.231359 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.095 4.095 3 C -0.149 4.149 4 C -0.094 4.094 5 C -0.133 4.133 6 C 0.499 3.501 7 O -0.599 6.599 8 N -0.705 5.705 9 C 0.159 3.841 10 C -0.044 4.044 11 C -0.475 4.475 12 H 0.047 0.953 13 C 0.035 3.965 14 N -0.939 5.939 15 Si 0.914 3.086 16 H -0.291 1.291 17 H -0.295 1.295 18 H -0.224 1.224 19 C -0.153 4.153 20 C -0.183 4.183 21 H 0.053 0.947 22 H 0.066 0.934 23 H 0.049 0.951 24 H 0.075 0.925 25 H 0.061 0.939 26 H 0.064 0.936 27 H 0.053 0.947 28 H 0.049 0.951 29 H 0.057 0.943 30 H 0.118 0.882 31 H 0.105 0.895 32 H 0.413 0.587 33 H 0.028 0.972 34 H 0.058 0.942 35 H 0.264 0.736 36 H 0.087 0.913 37 H 0.099 0.901 38 H 0.091 0.909 39 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.277 11.393 -0.881 16.055 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.114 4.114 3 C -0.207 4.207 4 C -0.132 4.132 5 C -0.173 4.173 6 C 0.288 3.712 7 O -0.481 6.481 8 N -0.354 5.354 9 C 0.034 3.966 10 C -0.045 4.045 11 C -0.512 4.512 12 H 0.066 0.934 13 C -0.164 4.164 14 N -0.578 5.578 15 Si 0.740 3.260 16 H -0.218 1.218 17 H -0.222 1.222 18 H -0.147 1.147 19 C -0.190 4.190 20 C -0.221 4.221 21 H 0.072 0.928 22 H 0.085 0.915 23 H 0.068 0.932 24 H 0.093 0.907 25 H 0.080 0.920 26 H 0.083 0.917 27 H 0.072 0.928 28 H 0.068 0.932 29 H 0.076 0.924 30 H 0.136 0.864 31 H 0.123 0.877 32 H 0.249 0.751 33 H 0.046 0.954 34 H 0.076 0.924 35 H 0.074 0.926 36 H 0.106 0.894 37 H 0.117 0.883 38 H 0.109 0.891 39 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges -11.760 10.891 -0.414 16.034 hybrid contribution 0.264 -1.079 0.071 1.114 sum -11.496 9.812 -0.343 15.118 Atomic orbital electron populations 1.21828 0.94737 1.01660 1.02160 1.21132 0.96222 0.96847 0.97164 1.21911 1.01516 0.95125 1.02111 1.21350 0.92703 1.00511 0.98601 1.21786 0.98115 1.02614 0.94766 1.21543 0.81799 0.79648 0.88257 1.90619 1.56362 1.51669 1.49454 1.45926 1.07059 1.51798 1.30654 1.20848 0.93613 0.93525 0.88590 1.19467 0.90188 1.01592 0.93217 1.20370 1.28590 0.91921 1.10339 0.93440 1.25538 0.95334 0.99588 0.95897 1.70000 1.46807 1.13114 1.27909 0.86276 0.77641 0.78652 0.83419 1.21767 1.22166 1.14655 1.22844 1.02418 0.90250 1.03488 1.23079 1.02201 1.01483 0.95372 0.92826 0.91467 0.93194 0.90663 0.92000 0.91730 0.92812 0.93226 0.92390 0.86381 0.87709 0.75113 0.95395 0.92416 0.92649 0.89448 0.88255 0.89101 0.89985 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.43 9.19 71.98 0.66 -1.77 16 2 C -0.10 -1.72 2.92 -10.79 -0.03 -1.75 16 3 C -0.15 -2.29 8.95 71.98 0.64 -1.65 16 4 C -0.09 -2.25 3.99 30.59 0.12 -2.13 16 5 C -0.13 -3.34 5.46 29.85 0.16 -3.17 16 6 C 0.50 17.77 7.82 87.65 0.69 18.46 16 7 O -0.60 -25.87 15.98 -3.04 -0.05 -25.92 16 8 N -0.70 -26.13 5.48 -463.07 -2.54 -28.67 16 9 C 0.16 6.65 5.15 86.38 0.44 7.09 16 10 C -0.04 -1.85 0.84 -52.92 -0.04 -1.89 16 11 C -0.47 -24.79 9.16 25.60 0.23 -24.55 16 12 H 0.05 2.72 8.06 -2.91 -0.02 2.69 16 13 C 0.04 1.96 5.47 84.66 0.46 2.42 16 14 N -0.94 -56.34 13.96 21.45 0.30 -56.05 16 15 Si 0.91 44.14 24.97 68.60 1.71 45.85 16 16 H -0.29 -14.54 7.02 99.48 0.70 -13.84 16 17 H -0.29 -14.26 7.11 99.48 0.71 -13.55 16 18 H -0.22 -9.80 5.73 99.48 0.57 -9.23 16 19 C -0.15 -5.39 9.96 30.62 0.30 -5.08 16 20 C -0.18 -6.97 8.03 30.62 0.25 -6.73 16 21 H 0.05 0.89 8.14 -2.38 -0.02 0.87 16 22 H 0.07 0.92 8.14 -2.39 -0.02 0.90 16 23 H 0.05 0.87 8.14 -2.39 -0.02 0.85 16 24 H 0.07 1.30 8.14 -2.39 -0.02 1.28 16 25 H 0.06 0.91 6.56 -2.39 -0.02 0.89 16 26 H 0.06 0.84 8.14 -2.39 -0.02 0.82 16 27 H 0.05 0.83 8.14 -2.39 -0.02 0.81 16 28 H 0.05 1.38 8.04 -2.39 -0.02 1.36 16 29 H 0.06 1.49 8.14 -2.39 -0.02 1.47 16 30 H 0.12 2.31 6.56 -2.38 -0.02 2.29 16 31 H 0.10 2.44 8.14 -2.39 -0.02 2.42 16 32 H 0.41 14.08 8.34 -92.70 -0.77 13.31 16 33 H 0.03 1.32 5.05 -2.39 -0.01 1.31 16 34 H 0.06 2.30 8.07 -2.39 -0.02 2.28 16 35 H 0.26 15.14 8.31 -92.71 -0.77 14.37 16 36 H 0.09 3.07 8.14 -2.39 -0.02 3.05 16 37 H 0.10 3.01 8.14 -2.39 -0.02 2.99 16 38 H 0.09 3.11 8.14 -2.39 -0.02 3.09 16 39 H 0.08 3.24 8.14 -2.39 -0.02 3.22 16 Total: -1.00 -65.28 313.87 3.41 -61.87 By element: Atomic # 1 Polarization: 23.56 SS G_CDS: 0.09 Total: 23.66 kcal Atomic # 6 Polarization: -24.64 SS G_CDS: 3.89 Total: -20.75 kcal Atomic # 7 Polarization: -82.48 SS G_CDS: -2.24 Total: -84.71 kcal Atomic # 8 Polarization: -25.87 SS G_CDS: -0.05 Total: -25.92 kcal Atomic # 14 Polarization: 44.14 SS G_CDS: 1.71 Total: 45.85 kcal Total: -65.28 3.41 -61.87 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000404141163.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -1.458 kcal (2) G-P(sol) polarization free energy of solvation -65.284 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -66.742 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.414 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.870 kcal (6) G-S(sol) free energy of system = (1) + (5) -63.328 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds