Wall clock time and date at job start Thu Apr 9 2020 12:10:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53001 * 109.47083 * 2 1 4 4 C 1.52994 * 109.47369 * 60.00218 * 3 2 1 5 5 C 1.53006 * 109.47330 * 300.00345 * 3 2 1 6 6 C 1.50696 * 109.46956 * 180.02562 * 3 2 1 7 7 O 1.21284 * 120.00516 * 4.96020 * 6 3 2 8 8 N 1.34777 * 120.00075 * 184.96406 * 6 3 2 9 9 C 1.46505 * 120.00513 * 185.00988 * 8 6 3 10 10 C 1.53001 * 109.47190 * 184.99554 * 9 8 6 11 11 C 1.50700 * 115.55241 * 54.18803 * 10 9 8 12 12 H 1.07995 * 120.00118 * 215.59258 * 11 10 9 13 13 C 1.37878 * 119.99881 * 35.31393 * 11 10 9 14 14 N 1.31512 * 119.99998 * 355.81969 * 13 11 10 15 15 Si 1.86804 * 119.99818 * 175.81498 * 13 11 10 16 16 H 1.48497 * 109.47144 * 90.00099 * 15 13 11 17 17 H 1.48500 * 109.46982 * 210.00584 * 15 13 11 18 18 H 1.48506 * 109.47129 * 330.00324 * 15 13 11 19 19 C 1.53003 * 117.49495 * 199.86005 * 10 9 8 20 20 C 1.53001 * 117.49422 * 268.51379 * 10 9 8 21 21 H 1.08996 * 109.47489 * 59.99464 * 1 2 3 22 22 H 1.08995 * 109.47031 * 180.02562 * 1 2 3 23 23 H 1.08999 * 109.46554 * 299.99459 * 1 2 3 24 24 H 1.09002 * 109.47009 * 240.00300 * 2 1 3 25 25 H 1.08996 * 109.47489 * 120.00536 * 2 1 3 26 26 H 1.08995 * 109.47457 * 184.67240 * 4 3 2 27 27 H 1.08998 * 109.47359 * 304.67490 * 4 3 2 28 28 H 1.09010 * 109.46962 * 64.66980 * 4 3 2 29 29 H 1.09004 * 109.47009 * 305.16255 * 5 3 2 30 30 H 1.08997 * 109.46986 * 65.15770 * 5 3 2 31 31 H 1.08994 * 109.47531 * 185.16150 * 5 3 2 32 32 H 0.97000 * 120.00026 * 5.00474 * 8 6 3 33 33 H 1.08995 * 109.46953 * 64.98998 * 9 8 6 34 34 H 1.08999 * 109.46402 * 304.98919 * 9 8 6 35 35 H 0.97000 * 119.99800 * 185.00057 * 14 13 11 36 36 H 1.09000 * 117.49234 * 215.00200 * 19 10 9 37 37 H 1.09000 * 117.49933 * 0.02562 * 19 10 9 38 38 H 1.08994 * 117.50318 * 359.97438 * 20 10 9 39 39 H 1.09007 * 117.49230 * 144.97673 * 20 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 1.5301 2.1638 1.2492 5 6 1.5299 2.1639 -1.2492 6 6 3.5470 1.4425 -0.0006 7 8 4.1534 0.3961 -0.0919 8 7 4.2209 2.6053 0.1003 9 6 5.6817 2.6174 -0.0105 10 6 6.2022 4.0301 0.2621 11 6 5.7610 4.6452 1.5651 12 1 5.5583 5.7045 1.6210 13 6 5.6106 3.8546 2.6847 14 7 5.7721 2.5524 2.5966 15 14 5.1777 4.6332 4.3266 16 1 3.7011 4.6902 4.4734 17 1 5.7536 3.8196 5.4274 18 1 5.7344 6.0087 4.3843 19 6 7.6041 4.3762 -0.2437 20 6 6.3729 4.9637 -0.9380 21 1 -0.3634 0.5139 -0.8899 22 1 -0.3633 -1.0276 0.0005 23 1 -0.3632 0.5138 0.8901 24 1 1.8933 -0.5138 -0.8900 25 1 1.8934 -0.5139 0.8899 26 1 1.8234 3.2127 1.2083 27 1 0.4433 2.0918 1.2922 28 1 1.9602 1.7005 2.1373 29 1 1.8158 1.5994 -2.1369 30 1 0.4439 2.2446 -1.2042 31 1 1.9667 3.1613 -1.2967 32 1 3.7388 3.4342 0.2461 33 1 5.9724 2.3105 -1.0152 34 1 6.1069 1.9267 0.7177 35 1 5.5957 1.9887 3.3660 36 1 8.2073 5.0488 0.3661 37 1 8.1554 3.5976 -0.7710 38 1 6.1149 4.5715 -1.9216 39 1 6.1657 6.0229 -0.7850 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000404155970.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 12:10:59 Heat of formation + Delta-G solvation = -33.786011 kcal Electronic energy + Delta-G solvation = -18243.335531 eV Core-core repulsion = 15572.075113 eV Total energy + Delta-G solvation = -2671.260419 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 239.163 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -39.38021 -36.88363 -35.57672 -32.97272 -32.15451 -29.91278 -27.08292 -26.00170 -25.29558 -24.28473 -21.29828 -20.69094 -19.23358 -18.14893 -16.70098 -15.75958 -15.10269 -14.85325 -14.60412 -13.98242 -13.93235 -13.54249 -13.15493 -12.77954 -12.40555 -12.13392 -11.88817 -11.67496 -11.60402 -11.37364 -11.12676 -11.07464 -10.94281 -10.70255 -10.51396 -10.33269 -10.31431 -10.21940 -9.67574 -9.02496 -8.82844 -8.68214 -8.25554 -7.71843 -5.96548 -4.17724 3.20792 3.30805 3.32770 3.64654 4.22542 4.30886 4.95472 5.00029 5.19167 5.27042 5.48667 5.53333 5.61912 5.67850 5.82958 5.88813 6.02926 6.07084 6.09645 6.14688 6.26530 6.31169 6.34437 6.41797 6.56523 6.61998 6.62837 6.69210 6.75018 6.91306 7.14558 7.26935 7.61581 7.76980 8.01352 8.33132 8.69338 8.86593 9.34705 9.45660 10.91542 Molecular weight = 239.16amu Principal moments of inertia in cm(-1) A = 0.021892 B = 0.008930 C = 0.007330 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1278.679260 B = 3134.611300 C = 3818.920007 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.097 4.097 3 C -0.083 4.083 4 C -0.141 4.141 5 C -0.138 4.138 6 C 0.515 3.485 7 O -0.564 6.564 8 N -0.680 5.680 9 C 0.164 3.836 10 C 0.037 3.963 11 C -0.498 4.498 12 H 0.060 0.940 13 C 0.075 3.925 14 N -0.863 5.863 15 Si 0.891 3.109 16 H -0.280 1.280 17 H -0.286 1.286 18 H -0.274 1.274 19 C -0.200 4.200 20 C -0.213 4.213 21 H 0.054 0.946 22 H 0.050 0.950 23 H 0.056 0.944 24 H 0.066 0.934 25 H 0.065 0.935 26 H 0.061 0.939 27 H 0.061 0.939 28 H 0.060 0.940 29 H 0.056 0.944 30 H 0.062 0.938 31 H 0.060 0.940 32 H 0.395 0.605 33 H 0.014 0.986 34 H 0.116 0.884 35 H 0.262 0.738 36 H 0.079 0.921 37 H 0.066 0.934 38 H 0.067 0.933 39 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.080 -0.468 -4.282 10.050 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.135 4.135 3 C -0.086 4.086 4 C -0.198 4.198 5 C -0.195 4.195 6 C 0.300 3.700 7 O -0.444 6.444 8 N -0.326 5.326 9 C 0.041 3.959 10 C 0.036 3.964 11 C -0.535 4.535 12 H 0.078 0.922 13 C -0.129 4.129 14 N -0.499 5.499 15 Si 0.719 3.281 16 H -0.206 1.206 17 H -0.211 1.211 18 H -0.199 1.199 19 C -0.238 4.238 20 C -0.250 4.250 21 H 0.073 0.927 22 H 0.069 0.931 23 H 0.075 0.925 24 H 0.084 0.916 25 H 0.084 0.916 26 H 0.080 0.920 27 H 0.080 0.920 28 H 0.079 0.921 29 H 0.075 0.925 30 H 0.081 0.919 31 H 0.079 0.921 32 H 0.229 0.771 33 H 0.032 0.968 34 H 0.133 0.867 35 H 0.073 0.927 36 H 0.097 0.903 37 H 0.085 0.915 38 H 0.086 0.914 39 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges -8.555 -1.366 -4.218 9.636 hybrid contribution -0.308 0.915 0.985 1.379 sum -8.863 -0.451 -3.233 9.445 Atomic orbital electron populations 1.21916 0.96220 1.01203 1.01777 1.21296 0.94601 0.94521 1.03073 1.20766 0.93321 0.97400 0.97095 1.21888 1.00725 1.00554 0.96628 1.21863 1.01050 1.00284 0.96329 1.20170 0.88749 0.84158 0.76972 1.90597 1.70242 1.31714 1.51818 1.45585 1.08440 1.08475 1.70095 1.21040 0.79020 0.98146 0.97688 1.19257 0.93736 0.91474 0.91921 1.20473 1.46827 0.94357 0.91856 0.92216 1.24995 0.94413 0.94827 0.98704 1.69874 1.46532 1.03105 1.30342 0.86601 0.78496 0.79355 0.83668 1.20572 1.21144 1.19897 1.22938 0.92594 1.03294 1.05020 1.22947 1.05649 0.99187 0.97231 0.92658 0.93071 0.92513 0.91557 0.91577 0.91952 0.92026 0.92123 0.92513 0.91883 0.92119 0.77055 0.96774 0.86660 0.92716 0.90274 0.91516 0.91413 0.90681 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.77 9.22 37.16 0.34 -1.43 16 2 C -0.10 -1.46 4.29 -26.73 -0.11 -1.58 16 3 C -0.08 -1.33 0.67 -155.66 -0.10 -1.43 16 4 C -0.14 -2.13 8.04 37.15 0.30 -1.83 16 5 C -0.14 -1.85 7.94 37.16 0.29 -1.55 16 6 C 0.51 10.85 6.48 -10.99 -0.07 10.78 16 7 O -0.56 -13.98 15.96 5.55 0.09 -13.89 16 8 N -0.68 -14.68 4.80 -60.29 -0.29 -14.97 16 9 C 0.16 3.94 4.62 -4.04 -0.02 3.92 16 10 C 0.04 0.87 2.04 -155.66 -0.32 0.55 16 11 C -0.50 -12.65 8.43 -34.44 -0.29 -12.94 16 12 H 0.06 1.52 7.82 -52.49 -0.41 1.11 16 13 C 0.08 1.93 5.31 -17.82 -0.09 1.83 16 14 N -0.86 -23.12 10.11 55.43 0.56 -22.56 16 15 Si 0.89 20.14 29.54 -169.99 -5.02 15.12 16 16 H -0.28 -6.21 7.11 56.52 0.40 -5.81 16 17 H -0.29 -6.58 7.11 56.52 0.40 -6.18 16 18 H -0.27 -6.20 7.11 56.52 0.40 -5.80 16 19 C -0.20 -4.41 9.96 -26.69 -0.27 -4.67 16 20 C -0.21 -4.44 9.92 -26.69 -0.26 -4.71 16 21 H 0.05 0.58 6.55 -51.93 -0.34 0.24 16 22 H 0.05 0.53 8.14 -51.93 -0.42 0.11 16 23 H 0.06 0.62 6.33 -51.93 -0.33 0.29 16 24 H 0.07 1.05 8.05 -51.93 -0.42 0.63 16 25 H 0.07 1.10 8.14 -51.93 -0.42 0.67 16 26 H 0.06 0.96 7.37 -51.93 -0.38 0.57 16 27 H 0.06 0.76 6.19 -51.93 -0.32 0.44 16 28 H 0.06 1.03 8.14 -51.92 -0.42 0.60 16 29 H 0.06 0.76 8.14 -51.93 -0.42 0.34 16 30 H 0.06 0.70 6.72 -51.93 -0.35 0.35 16 31 H 0.06 0.81 7.91 -51.93 -0.41 0.40 16 32 H 0.40 8.13 7.08 -40.82 -0.29 7.84 16 33 H 0.01 0.33 8.09 -51.93 -0.42 -0.09 16 34 H 0.12 3.18 5.89 -51.93 -0.31 2.88 16 35 H 0.26 6.93 8.32 -40.82 -0.34 6.59 16 36 H 0.08 1.74 8.14 -51.93 -0.42 1.32 16 37 H 0.07 1.39 8.14 -51.93 -0.42 0.97 16 38 H 0.07 1.32 8.14 -51.93 -0.42 0.90 16 39 H 0.07 1.52 8.14 -51.93 -0.42 1.10 16 LS Contribution 310.09 15.07 4.67 4.67 Total: -1.00 -28.10 310.09 -7.09 -35.18 By element: Atomic # 1 Polarization: 15.98 SS G_CDS: -6.49 Total: 9.49 kcal Atomic # 6 Polarization: -12.45 SS G_CDS: -0.61 Total: -13.05 kcal Atomic # 7 Polarization: -37.80 SS G_CDS: 0.27 Total: -37.53 kcal Atomic # 8 Polarization: -13.98 SS G_CDS: 0.09 Total: -13.89 kcal Atomic # 14 Polarization: 20.14 SS G_CDS: -5.02 Total: 15.12 kcal Total LS contribution 4.67 Total: 4.67 kcal Total: -28.10 -7.09 -35.18 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000404155970.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 1.398 kcal (2) G-P(sol) polarization free energy of solvation -28.097 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -26.699 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.087 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.184 kcal (6) G-S(sol) free energy of system = (1) + (5) -33.786 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds