Wall clock time and date at job start Thu Apr 9 2020 12:09:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.08997 * 110.05753 * 2 1 4 4 C 1.53876 * 110.03119 * 238.57798 * 2 1 3 5 5 C 1.54260 * 106.60091 * 240.71874 * 4 2 1 6 6 C 1.54890 * 104.19715 * 336.39188 * 5 4 2 7 7 C 1.54271 * 110.02981 * 121.41672 * 2 1 3 8 8 H 1.09000 * 110.59610 * 24.15589 * 7 2 1 9 9 C 1.53002 * 110.48596 * 261.57297 * 7 2 1 10 10 C 1.50696 * 109.46919 * 178.77207 * 9 7 2 11 11 O 1.21279 * 120.00077 * 359.97438 * 10 9 7 12 12 N 1.34777 * 119.99761 * 179.97438 * 10 9 7 13 13 C 1.46496 * 120.00266 * 179.97438 * 12 10 9 14 14 C 1.53002 * 109.47428 * 180.02562 * 13 12 10 15 15 C 1.50706 * 109.46931 * 179.97438 * 14 13 12 16 16 H 1.07999 * 120.00193 * 0.02562 * 15 14 13 17 17 C 1.37879 * 119.99398 * 180.02562 * 15 14 13 18 18 N 1.31514 * 120.00338 * 0.02562 * 17 15 14 19 19 Si 1.86800 * 119.99424 * 180.02562 * 17 15 14 20 20 H 1.48503 * 109.46845 * 180.02562 * 19 17 15 21 21 H 1.48503 * 109.47399 * 299.99813 * 19 17 15 22 22 H 1.48498 * 109.47295 * 60.00420 * 19 17 15 23 23 H 1.08996 * 109.47083 * 298.58622 * 1 2 3 24 24 H 1.09004 * 109.47067 * 58.58514 * 1 2 3 25 25 H 1.08996 * 109.47147 * 178.58407 * 1 2 3 26 26 H 1.09003 * 110.02624 * 121.43267 * 4 2 1 27 27 H 1.08997 * 110.07601 * 0.02634 * 4 2 1 28 28 H 1.09004 * 110.48653 * 217.71837 * 5 4 2 29 29 H 1.09003 * 110.60258 * 95.12465 * 5 4 2 30 30 H 1.09010 * 110.75867 * 279.62888 * 6 5 4 31 31 H 1.09000 * 110.76000 * 156.26051 * 6 5 4 32 32 H 1.09004 * 109.47059 * 58.76708 * 9 7 2 33 33 H 1.09004 * 109.46930 * 298.77106 * 9 7 2 34 34 H 0.97008 * 120.00332 * 0.02562 * 12 10 9 35 35 H 1.09004 * 109.47181 * 60.00312 * 13 12 10 36 36 H 1.08996 * 109.47366 * 300.00746 * 13 12 10 37 37 H 1.09000 * 109.46986 * 60.00432 * 14 13 12 38 38 H 1.08992 * 109.46974 * 300.00496 * 14 13 12 39 39 H 0.97000 * 119.99706 * 359.97438 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9038 1.0239 0.0000 4 6 2.0571 -0.7537 -1.2337 5 6 2.8873 -1.9408 -0.7034 6 6 3.3136 -1.5009 0.7192 7 6 2.0584 -0.7555 1.2369 8 1 1.3151 -1.4658 1.5988 9 6 2.4392 0.2297 2.3439 10 6 2.9232 -0.5328 3.5502 11 8 2.9595 -1.7448 3.5271 12 7 3.3156 0.1322 4.6549 13 6 3.7856 -0.6089 5.8279 14 6 4.1665 0.3763 6.9348 15 6 4.6494 -0.3863 8.1417 16 1 4.6818 -1.4656 8.1211 17 6 5.0497 0.2941 9.2721 18 7 5.0098 1.6084 9.2973 19 14 5.6490 -0.6511 10.7677 20 1 6.0173 0.3051 11.8426 21 1 4.5688 -1.5476 11.2523 22 1 6.8366 -1.4621 10.3977 23 1 -0.3633 0.4917 0.9024 24 1 -0.3633 0.5357 -0.8771 25 1 -0.3633 -1.0273 -0.0254 26 1 2.6867 -0.0955 -1.8324 27 1 1.2234 -1.1194 -1.8331 28 1 3.7637 -2.1038 -1.3308 29 1 2.2790 -2.8440 -0.6572 30 1 4.1710 -0.8291 0.6753 31 1 3.5325 -2.3680 1.3424 32 1 1.5676 0.8251 2.6159 33 1 3.2319 0.8877 1.9878 34 1 3.2862 1.1017 4.6735 35 1 4.6568 -1.2050 5.5560 36 1 2.9925 -1.2663 6.1841 37 1 3.2950 0.9720 7.2066 38 1 4.9594 1.0339 6.5788 39 1 4.6989 2.0991 8.5205 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000346116427.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 12:09:43 Heat of formation + Delta-G solvation = -86.347188 kcal Electronic energy + Delta-G solvation = -16912.564689 eV Core-core repulsion = 14239.025047 eV Total energy + Delta-G solvation = -2673.539642 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 239.163 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -39.76967 -38.15014 -35.00031 -33.07206 -31.69292 -31.28839 -29.34012 -26.39338 -24.84925 -23.74573 -21.41754 -20.72668 -19.92541 -19.55851 -17.01317 -16.34693 -15.80170 -15.34238 -15.05770 -14.76446 -13.97530 -13.75818 -13.66304 -13.34138 -13.13161 -12.84400 -12.30484 -12.20110 -11.88031 -11.65218 -11.06804 -10.98397 -10.95248 -10.82422 -10.65871 -10.55080 -10.49913 -10.41752 -10.18894 -9.96887 -9.44420 -8.67395 -8.53714 -8.36531 -6.44662 -4.14533 3.01892 3.42525 3.44394 3.62821 3.66944 4.44921 4.50091 4.54469 4.60183 5.08189 5.12683 5.21111 5.22824 5.33566 5.33690 5.42413 5.48878 5.58619 5.62626 5.72667 5.79318 5.88333 5.95656 6.04371 6.05297 6.21922 6.23309 6.25475 6.34257 6.46882 6.61095 6.85287 7.25075 7.34714 7.97294 8.09308 8.37472 8.64839 8.79510 9.57441 10.96439 Molecular weight = 239.16amu Principal moments of inertia in cm(-1) A = 0.058398 B = 0.003715 C = 0.003605 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 479.350207 B = 7534.995159 C = 7765.375956 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.095 4.095 3 H 0.071 0.929 4 C -0.120 4.120 5 C -0.126 4.126 6 C -0.118 4.118 7 C -0.070 4.070 8 H 0.082 0.918 9 C -0.135 4.135 10 C 0.504 3.496 11 O -0.547 6.547 12 N -0.728 5.728 13 C 0.129 3.871 14 C -0.001 4.001 15 C -0.603 4.603 16 H 0.053 0.947 17 C 0.017 3.983 18 N -0.910 5.910 19 Si 1.071 2.929 20 H -0.282 1.282 21 H -0.287 1.287 22 H -0.287 1.287 23 H 0.054 0.946 24 H 0.052 0.948 25 H 0.055 0.945 26 H 0.060 0.940 27 H 0.062 0.938 28 H 0.061 0.939 29 H 0.063 0.937 30 H 0.060 0.940 31 H 0.079 0.921 32 H 0.089 0.911 33 H 0.089 0.911 34 H 0.396 0.604 35 H 0.056 0.944 36 H 0.056 0.944 37 H 0.013 0.987 38 H 0.013 0.987 39 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.705 -1.071 -19.421 20.573 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.114 4.114 3 H 0.090 0.910 4 C -0.157 4.157 5 C -0.163 4.163 6 C -0.155 4.155 7 C -0.089 4.089 8 H 0.100 0.900 9 C -0.175 4.175 10 C 0.290 3.710 11 O -0.426 6.426 12 N -0.378 5.378 13 C 0.007 3.993 14 C -0.038 4.038 15 C -0.641 4.641 16 H 0.071 0.929 17 C -0.187 4.187 18 N -0.546 5.546 19 Si 0.899 3.101 20 H -0.207 1.207 21 H -0.213 1.213 22 H -0.213 1.213 23 H 0.073 0.927 24 H 0.071 0.929 25 H 0.074 0.926 26 H 0.079 0.921 27 H 0.080 0.920 28 H 0.080 0.920 29 H 0.082 0.918 30 H 0.079 0.921 31 H 0.098 0.902 32 H 0.107 0.893 33 H 0.108 0.892 34 H 0.229 0.771 35 H 0.075 0.925 36 H 0.075 0.925 37 H 0.031 0.969 38 H 0.031 0.969 39 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -6.099 -1.767 -17.874 18.968 hybrid contribution -0.602 0.400 -1.526 1.688 sum -6.701 -1.367 -19.399 20.570 Atomic orbital electron populations 1.21887 0.95116 1.01774 1.01419 1.21829 0.95591 0.99384 0.94552 0.91028 1.22209 0.99297 0.97143 0.97069 1.22355 0.99285 0.97887 0.96787 1.22566 0.96763 1.00821 0.95388 1.21801 0.98178 0.96137 0.92772 0.89965 1.21768 1.02447 0.99134 0.94192 1.20642 0.77665 0.88432 0.84254 1.90648 1.54793 1.14128 1.82999 1.46384 1.65852 1.10482 1.15094 1.21522 0.98214 0.95528 0.84067 1.19451 0.96161 0.94946 0.93254 1.21898 1.48113 0.94584 0.99537 0.92897 1.25894 0.94797 0.96594 1.01419 1.70805 1.44032 1.06688 1.33088 0.83507 0.76456 0.74851 0.75291 1.20715 1.21310 1.21303 0.92690 0.92927 0.92614 0.92123 0.91965 0.92048 0.91815 0.92091 0.90190 0.89299 0.89230 0.77123 0.92530 0.92544 0.96896 0.96893 0.92183 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.21 8.84 37.16 0.33 -0.88 16 2 C -0.10 -0.87 3.07 -89.50 -0.27 -1.15 16 3 H 0.07 0.61 7.84 -51.93 -0.41 0.21 16 4 C -0.12 -1.04 6.46 -25.62 -0.17 -1.21 16 5 C -0.13 -1.24 6.83 -25.07 -0.17 -1.41 16 6 C -0.12 -1.43 5.63 -24.74 -0.14 -1.56 16 7 C -0.07 -0.81 2.00 -88.96 -0.18 -0.99 16 8 H 0.08 1.08 7.73 -51.93 -0.40 0.68 16 9 C -0.14 -1.60 5.06 -27.88 -0.14 -1.74 16 10 C 0.50 8.38 7.61 -10.99 -0.08 8.30 16 11 O -0.55 -11.03 14.51 5.56 0.08 -10.95 16 12 N -0.73 -12.71 5.56 -60.30 -0.33 -13.05 16 13 C 0.13 2.81 5.61 -4.04 -0.02 2.79 16 14 C 0.00 -0.02 4.40 -27.88 -0.12 -0.14 16 15 C -0.60 -17.13 9.11 -34.44 -0.31 -17.45 16 16 H 0.05 1.49 7.74 -52.49 -0.41 1.09 16 17 C 0.02 0.49 5.46 -17.82 -0.10 0.39 16 18 N -0.91 -27.48 13.65 55.43 0.76 -26.72 16 19 Si 1.07 25.18 29.90 -169.99 -5.08 20.10 16 20 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 21 H -0.29 -6.45 7.11 56.52 0.40 -6.04 16 22 H -0.29 -6.44 7.11 56.52 0.40 -6.04 16 23 H 0.05 0.46 8.14 -51.93 -0.42 0.03 16 24 H 0.05 0.38 8.14 -51.93 -0.42 -0.04 16 25 H 0.05 0.48 8.14 -51.93 -0.42 0.05 16 26 H 0.06 0.49 8.14 -51.93 -0.42 0.06 16 27 H 0.06 0.50 7.67 -51.93 -0.40 0.10 16 28 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 29 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 30 H 0.06 0.72 8.02 -51.92 -0.42 0.30 16 31 H 0.08 1.17 7.06 -51.93 -0.37 0.80 16 32 H 0.09 0.90 8.14 -51.93 -0.42 0.47 16 33 H 0.09 0.91 8.10 -51.93 -0.42 0.49 16 34 H 0.40 5.90 8.47 -40.82 -0.35 5.56 16 35 H 0.06 1.29 8.14 -51.93 -0.42 0.87 16 36 H 0.06 1.29 8.14 -51.93 -0.42 0.87 16 37 H 0.01 0.33 8.01 -51.93 -0.42 -0.09 16 38 H 0.01 0.33 8.01 -51.93 -0.42 -0.09 16 39 H 0.27 7.97 7.22 -40.82 -0.29 7.67 16 LS Contribution 314.18 15.07 4.73 4.73 Total: -1.00 -31.71 314.18 -8.12 -39.83 By element: Atomic # 1 Polarization: 7.99 SS G_CDS: -6.89 Total: 1.10 kcal Atomic # 6 Polarization: -13.66 SS G_CDS: -1.38 Total: -15.04 kcal Atomic # 7 Polarization: -40.19 SS G_CDS: 0.42 Total: -39.77 kcal Atomic # 8 Polarization: -11.03 SS G_CDS: 0.08 Total: -10.95 kcal Atomic # 14 Polarization: 25.18 SS G_CDS: -5.08 Total: 20.10 kcal Total LS contribution 4.73 Total: 4.73 kcal Total: -31.71 -8.12 -39.83 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000346116427.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -46.518 kcal (2) G-P(sol) polarization free energy of solvation -31.712 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -78.229 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.118 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.829 kcal (6) G-S(sol) free energy of system = (1) + (5) -86.347 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds