Wall clock time and date at job start Thu Apr 9 2020 12:09:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53011 * 1 3 3 H 1.09000 * 110.53232 * 2 1 4 4 C 1.54962 * 110.52743 * 122.62456 * 2 1 3 5 5 C 1.54890 * 102.77712 * 156.56861 * 4 2 1 6 6 C 1.54269 * 104.19317 * 322.08528 * 5 4 2 7 7 C 1.53876 * 106.59961 * 23.61177 * 6 5 4 8 8 H 1.09004 * 110.02683 * 240.66393 * 7 6 5 9 9 C 1.52996 * 110.03516 * 119.28269 * 7 6 5 10 10 C 1.50700 * 109.46969 * 67.08917 * 9 7 6 11 11 O 1.21283 * 120.00275 * 359.97438 * 10 9 7 12 12 N 1.34777 * 120.00075 * 179.97438 * 10 9 7 13 13 C 1.46499 * 120.00065 * 180.02562 * 12 10 9 14 14 C 1.53004 * 109.47198 * 180.02562 * 13 12 10 15 15 C 1.50701 * 109.47211 * 180.02562 * 14 13 12 16 16 H 1.08002 * 119.99761 * 359.97438 * 15 14 13 17 17 C 1.37871 * 119.99694 * 180.27574 * 15 14 13 18 18 N 1.31514 * 120.00482 * 359.71466 * 17 15 14 19 19 Si 1.86801 * 119.99746 * 179.72062 * 17 15 14 20 20 H 1.48504 * 109.47209 * 89.99886 * 19 17 15 21 21 H 1.48501 * 109.47358 * 209.99377 * 19 17 15 22 22 H 1.48496 * 109.47341 * 329.99989 * 19 17 15 23 23 H 1.08999 * 109.47022 * 182.61098 * 1 2 3 24 24 H 1.08998 * 109.47111 * 302.61548 * 1 2 3 25 25 H 1.09011 * 109.46615 * 62.61556 * 1 2 3 26 26 H 1.09003 * 110.71952 * 38.25227 * 4 2 1 27 27 H 1.09005 * 110.76718 * 274.90687 * 4 2 1 28 28 H 1.08999 * 110.48511 * 203.40981 * 5 4 2 29 29 H 1.08999 * 110.48638 * 80.76348 * 5 4 2 30 30 H 1.08995 * 110.02991 * 264.32329 * 6 5 4 31 31 H 1.09000 * 110.02938 * 142.89432 * 6 5 4 32 32 H 1.09002 * 109.47033 * 307.09579 * 9 7 6 33 33 H 1.08998 * 109.47408 * 187.08990 * 9 7 6 34 34 H 0.97000 * 120.00140 * 0.02562 * 12 10 9 35 35 H 1.09000 * 109.47602 * 60.00059 * 13 12 10 36 36 H 1.09007 * 109.47337 * 299.99774 * 13 12 10 37 37 H 1.09000 * 109.47211 * 59.99311 * 14 13 12 38 38 H 1.09007 * 109.46376 * 299.99853 * 14 13 12 39 39 H 0.96995 * 120.00207 * 179.97438 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.9124 1.0208 0.0000 4 6 2.0735 -0.7824 1.2223 5 6 3.4916 -1.1992 0.7593 6 6 3.3164 -1.5415 -0.7347 7 6 2.0700 -0.7788 -1.2172 8 1 1.3174 -1.4817 -1.5745 9 6 2.4508 0.1940 -2.3350 10 6 2.8762 -0.5833 -3.5540 11 8 2.8753 -1.7959 -3.5309 12 7 3.2575 0.0691 -4.6700 13 6 3.6705 -0.6865 -5.8552 14 6 4.0514 0.2863 -6.9731 15 6 4.4757 -0.4909 -8.1925 16 1 4.4742 -1.5708 -8.1720 17 6 4.8716 0.1765 -9.3320 18 7 4.8737 1.4914 -9.3568 19 14 5.4049 -0.7869 -10.8410 20 1 4.2248 -1.0487 -11.7037 21 1 6.4090 -0.0001 -11.6013 22 1 6.0046 -2.0777 -10.4177 23 1 -0.3633 -1.0266 0.0468 24 1 -0.3633 0.5539 0.8656 25 1 -0.3633 0.4727 -0.9126 26 1 1.4589 -1.6601 1.4226 27 1 2.1274 -0.1388 2.1003 28 1 3.8321 -2.0738 1.3136 29 1 4.1913 -0.3725 0.8818 30 1 3.1683 -2.6144 -0.8571 31 1 4.1926 -1.2185 -1.2970 32 1 3.2739 0.8261 -2.0017 33 1 1.5914 0.8169 -2.5829 34 1 3.2586 1.0389 -4.6885 35 1 2.8474 -1.3187 -6.1882 36 1 4.5301 -1.3095 -5.6077 37 1 4.8747 0.9183 -6.6399 38 1 3.1921 0.9096 -7.2207 39 1 5.1526 1.9610 -10.1584 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000346116430.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 12:09:47 Heat of formation + Delta-G solvation = -82.640333 kcal Electronic energy + Delta-G solvation = -16891.910093 eV Core-core repulsion = 14218.531192 eV Total energy + Delta-G solvation = -2673.378901 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 239.163 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -39.73545 -38.06059 -34.80028 -32.83219 -31.59043 -31.33355 -29.52104 -26.42412 -25.00116 -23.90797 -21.09133 -20.69803 -19.97680 -19.33538 -16.64373 -16.20067 -15.91709 -15.25156 -14.79862 -14.65191 -14.45469 -13.85000 -13.53394 -13.36127 -12.96965 -12.66562 -12.29969 -12.14252 -11.90617 -11.20057 -11.09759 -11.02410 -10.96312 -10.74413 -10.67274 -10.62084 -10.57835 -10.36871 -10.30305 -9.75208 -9.41626 -9.11604 -8.51509 -8.32087 -6.09180 -4.11999 3.09873 3.29532 3.35562 3.39759 3.76133 4.41690 4.47454 4.55850 4.64180 5.11326 5.18232 5.26656 5.27809 5.28301 5.40100 5.45106 5.51508 5.61409 5.68018 5.72661 5.82302 5.90819 5.98435 6.08352 6.10978 6.25500 6.36957 6.38108 6.40646 6.49243 6.76061 6.98167 7.52714 7.62602 7.89285 8.08180 8.28988 8.73531 8.94235 9.52861 11.02447 Molecular weight = 239.16amu Principal moments of inertia in cm(-1) A = 0.057016 B = 0.003713 C = 0.003629 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 490.971156 B = 7539.818276 C = 7713.050909 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.095 4.095 3 H 0.075 0.925 4 C -0.119 4.119 5 C -0.128 4.128 6 C -0.110 4.110 7 C -0.071 4.071 8 H 0.080 0.920 9 C -0.136 4.136 10 C 0.502 3.498 11 O -0.549 6.549 12 N -0.726 5.726 13 C 0.122 3.878 14 C 0.012 3.988 15 C -0.521 4.521 16 H 0.059 0.941 17 C 0.059 3.941 18 N -0.895 5.895 19 Si 0.897 3.103 20 H -0.279 1.279 21 H -0.286 1.286 22 H -0.272 1.272 23 H 0.055 0.945 24 H 0.052 0.948 25 H 0.055 0.945 26 H 0.066 0.934 27 H 0.062 0.938 28 H 0.061 0.939 29 H 0.062 0.938 30 H 0.065 0.935 31 H 0.061 0.939 32 H 0.089 0.911 33 H 0.088 0.912 34 H 0.397 0.603 35 H 0.054 0.946 36 H 0.054 0.946 37 H 0.022 0.978 38 H 0.022 0.978 39 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.033 -0.093 19.357 20.276 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.113 4.113 3 H 0.093 0.907 4 C -0.157 4.157 5 C -0.166 4.166 6 C -0.147 4.147 7 C -0.089 4.089 8 H 0.098 0.902 9 C -0.176 4.176 10 C 0.288 3.712 11 O -0.428 6.428 12 N -0.376 5.376 13 C -0.001 4.001 14 C -0.025 4.025 15 C -0.560 4.560 16 H 0.077 0.923 17 C -0.143 4.143 18 N -0.534 5.534 19 Si 0.724 3.276 20 H -0.206 1.206 21 H -0.212 1.212 22 H -0.197 1.197 23 H 0.074 0.926 24 H 0.071 0.929 25 H 0.074 0.926 26 H 0.085 0.915 27 H 0.081 0.919 28 H 0.080 0.920 29 H 0.081 0.919 30 H 0.084 0.916 31 H 0.080 0.920 32 H 0.108 0.892 33 H 0.107 0.893 34 H 0.230 0.770 35 H 0.073 0.927 36 H 0.073 0.927 37 H 0.040 0.960 38 H 0.040 0.960 39 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -5.980 -0.828 19.227 20.152 hybrid contribution 0.352 0.145 -1.037 1.104 sum -5.628 -0.683 18.190 19.053 Atomic orbital electron populations 1.21813 0.95079 1.01809 1.01483 1.22075 0.95402 0.99260 0.94608 0.90700 1.22564 0.96382 0.99623 0.97107 1.22407 0.96822 1.00754 0.96566 1.22096 0.97519 1.00662 0.94459 1.21581 0.98066 0.96168 0.93128 0.90204 1.21837 1.02687 0.99107 0.93988 1.20652 0.77495 0.88544 0.84490 1.90661 1.54203 1.14130 1.83775 1.46377 1.66898 1.10526 1.13790 1.21684 0.98617 0.95633 0.84139 1.19324 0.97080 0.94407 0.91704 1.21064 1.44718 0.93240 0.96997 0.92278 1.24998 0.95473 0.94920 0.98917 1.69954 1.47882 1.06689 1.28828 0.86512 0.78459 0.79971 0.82617 1.20550 1.21162 1.19724 0.92623 0.92892 0.92607 0.91547 0.91935 0.92006 0.91925 0.91571 0.91984 0.89241 0.89337 0.77009 0.92726 0.92732 0.95979 0.95996 0.92852 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.21 9.12 37.16 0.34 -0.87 16 2 C -0.09 -0.87 2.99 -88.92 -0.27 -1.14 16 3 H 0.07 0.64 7.85 -51.93 -0.41 0.24 16 4 C -0.12 -1.03 6.33 -24.70 -0.16 -1.19 16 5 C -0.13 -1.23 6.83 -25.07 -0.17 -1.40 16 6 C -0.11 -1.34 5.37 -25.61 -0.14 -1.48 16 7 C -0.07 -0.82 2.12 -89.51 -0.19 -1.01 16 8 H 0.08 1.06 7.64 -51.93 -0.40 0.66 16 9 C -0.14 -1.62 4.84 -27.88 -0.14 -1.76 16 10 C 0.50 8.42 7.37 -10.98 -0.08 8.34 16 11 O -0.55 -11.16 15.10 5.55 0.08 -11.08 16 12 N -0.73 -12.75 5.56 -60.29 -0.33 -13.09 16 13 C 0.12 2.63 5.61 -4.04 -0.02 2.61 16 14 C 0.01 0.31 5.09 -27.88 -0.14 0.17 16 15 C -0.52 -14.61 9.11 -34.44 -0.31 -14.93 16 16 H 0.06 1.63 7.74 -52.49 -0.41 1.22 16 17 C 0.06 1.66 5.46 -17.82 -0.10 1.56 16 18 N -0.89 -26.27 13.29 55.43 0.74 -25.53 16 19 Si 0.90 21.50 29.54 -169.99 -5.02 16.48 16 20 H -0.28 -6.61 7.11 56.52 0.40 -6.21 16 21 H -0.29 -6.76 7.11 56.52 0.40 -6.36 16 22 H -0.27 -6.43 7.11 56.52 0.40 -6.03 16 23 H 0.05 0.47 8.12 -51.93 -0.42 0.05 16 24 H 0.05 0.38 8.14 -51.93 -0.42 -0.04 16 25 H 0.05 0.47 8.14 -51.92 -0.42 0.04 16 26 H 0.07 0.57 8.04 -51.93 -0.42 0.15 16 27 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 28 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 29 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 30 H 0.07 0.89 8.14 -51.93 -0.42 0.46 16 31 H 0.06 0.84 7.36 -51.93 -0.38 0.46 16 32 H 0.09 0.93 8.14 -51.93 -0.42 0.51 16 33 H 0.09 0.91 8.14 -51.93 -0.42 0.48 16 34 H 0.40 6.01 8.47 -40.82 -0.35 5.66 16 35 H 0.05 1.23 8.14 -51.93 -0.42 0.81 16 36 H 0.05 1.23 8.14 -51.93 -0.42 0.81 16 37 H 0.02 0.57 8.14 -51.93 -0.42 0.15 16 38 H 0.02 0.57 8.14 -51.93 -0.42 0.15 16 39 H 0.26 7.25 8.31 -40.82 -0.34 6.92 16 LS Contribution 316.30 15.07 4.77 4.77 Total: -1.00 -30.97 316.30 -8.13 -39.10 By element: Atomic # 1 Polarization: 7.45 SS G_CDS: -6.99 Total: 0.47 kcal Atomic # 6 Polarization: -9.73 SS G_CDS: -1.37 Total: -11.10 kcal Atomic # 7 Polarization: -39.03 SS G_CDS: 0.40 Total: -38.62 kcal Atomic # 8 Polarization: -11.16 SS G_CDS: 0.08 Total: -11.08 kcal Atomic # 14 Polarization: 21.50 SS G_CDS: -5.02 Total: 16.48 kcal Total LS contribution 4.77 Total: 4.77 kcal Total: -30.97 -8.13 -39.10 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000346116430.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -43.545 kcal (2) G-P(sol) polarization free energy of solvation -30.966 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -74.511 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.129 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.096 kcal (6) G-S(sol) free energy of system = (1) + (5) -82.640 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds