Wall clock time and date at job start Thu Apr 9 2020 12:09:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.08999 * 110.01240 * 2 1 4 4 C 1.54260 * 110.07494 * 238.58501 * 2 1 3 5 5 C 1.54890 * 104.19580 * 217.08131 * 4 2 1 6 6 C 1.54891 * 102.74995 * 37.94105 * 5 4 2 7 7 C 1.53872 * 110.03354 * 121.38798 * 2 1 3 8 8 H 1.08999 * 110.03890 * 238.66716 * 7 2 1 9 9 C 1.52998 * 110.03263 * 0.05500 * 7 2 1 10 10 C 1.50706 * 109.47348 * 184.99632 * 9 7 2 11 11 O 1.21283 * 119.99503 * 359.97438 * 10 9 7 12 12 N 1.34773 * 120.00081 * 179.72561 * 10 9 7 13 13 C 1.46492 * 120.00231 * 359.97438 * 12 10 9 14 14 C 1.46506 * 119.99968 * 180.02562 * 12 10 9 15 15 C 1.50699 * 109.47352 * 89.99400 * 14 12 10 16 16 H 1.08000 * 119.99828 * 0.02562 * 15 14 12 17 17 C 1.37870 * 120.00146 * 179.97438 * 15 14 12 18 18 N 1.31516 * 119.99841 * 0.02562 * 17 15 14 19 19 Si 1.86801 * 120.00215 * 180.02562 * 17 15 14 20 20 H 1.48501 * 109.46988 * 90.00142 * 19 17 15 21 21 H 1.48502 * 109.47218 * 209.99962 * 19 17 15 22 22 H 1.48501 * 109.47118 * 330.00116 * 19 17 15 23 23 H 1.08998 * 109.47508 * 298.60563 * 1 2 3 24 24 H 1.08997 * 109.47370 * 58.60880 * 1 2 3 25 25 H 1.09001 * 109.46944 * 178.60778 * 1 2 3 26 26 H 1.09001 * 110.48891 * 335.75864 * 4 2 1 27 27 H 1.09002 * 110.48738 * 98.26620 * 4 2 1 28 28 H 1.09002 * 110.75539 * 156.25586 * 5 4 2 29 29 H 1.08999 * 110.75481 * 279.44020 * 5 4 2 30 30 H 1.09002 * 110.48476 * 203.37910 * 6 5 4 31 31 H 1.08996 * 110.48447 * 80.73344 * 6 5 4 32 32 H 1.09001 * 109.47671 * 64.99841 * 9 7 2 33 33 H 1.08998 * 109.47454 * 304.99838 * 9 7 2 34 34 H 1.09001 * 109.47443 * 89.99785 * 13 12 10 35 35 H 1.08999 * 109.47479 * 210.00762 * 13 12 10 36 36 H 1.09006 * 109.47080 * 330.00171 * 13 12 10 37 37 H 1.08995 * 109.47161 * 210.00105 * 14 12 10 38 38 H 1.09002 * 109.46900 * 329.99415 * 14 12 10 39 39 H 0.97007 * 120.00044 * 180.02562 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9030 1.0242 0.0000 4 6 2.0595 -0.7552 -1.2365 5 6 3.3150 -1.4995 -0.7181 6 6 2.8886 -1.9396 0.7044 7 6 2.0571 -0.7529 1.2341 8 1 2.6853 -0.0940 1.8334 9 6 0.8862 -1.2670 2.0740 10 6 1.4127 -1.8940 3.3393 11 8 2.6069 -1.9268 3.5483 12 7 0.5562 -2.4137 4.2408 13 6 -0.8866 -2.3686 3.9912 14 6 1.0680 -3.0227 5.4711 15 6 1.1686 -1.9726 6.5473 16 1 0.8798 -0.9536 6.3362 17 6 1.6283 -2.3130 7.8017 18 7 1.9796 -3.5540 8.0590 19 14 1.7524 -1.0115 9.1360 20 1 0.4753 -0.9541 9.8917 21 1 2.8606 -1.3564 10.0624 22 1 2.0198 0.3105 8.5147 23 1 -0.3634 0.4920 0.9022 24 1 -0.3634 0.5353 -0.8772 25 1 -0.3633 -1.0274 -0.0250 26 1 1.3160 -1.4663 -1.5965 27 1 2.3283 -0.0534 -2.0260 28 1 3.5348 -2.3666 -1.3411 29 1 4.1726 -0.8280 -0.6770 30 1 3.7647 -2.1019 1.3322 31 1 2.2789 -2.8419 0.6578 32 1 0.3293 -2.0110 1.5044 33 1 0.2280 -0.4359 2.3271 34 1 -1.1909 -3.2678 3.4553 35 1 -1.4182 -2.3143 4.9411 36 1 -1.1242 -1.4902 3.3911 37 1 0.3895 -3.8117 5.7955 38 1 2.0546 -3.4464 5.2835 39 1 2.3027 -3.7936 8.9417 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000346444903.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 12:09:49 Heat of formation + Delta-G solvation = -59.217880 kcal Electronic energy + Delta-G solvation = -17721.518311 eV Core-core repulsion = 15049.155084 eV Total energy + Delta-G solvation = -2672.363227 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 239.163 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -39.61019 -37.87057 -34.70357 -32.63904 -31.68604 -30.65956 -27.90749 -26.14014 -25.23542 -24.77619 -22.48919 -20.66898 -18.93072 -17.93794 -16.59991 -16.49202 -15.57076 -15.15199 -14.75119 -14.54276 -14.09017 -13.63766 -13.27753 -12.99382 -12.46629 -12.20302 -12.13017 -12.06359 -11.78006 -11.59631 -11.17627 -10.89109 -10.81745 -10.69707 -10.62288 -10.60208 -10.40134 -10.32702 -10.12114 -10.08690 -9.58080 -8.72202 -8.40850 -7.55995 -6.01342 -4.05939 3.31478 3.37985 3.42247 3.56572 4.06926 4.47284 4.66600 4.69135 4.80106 5.28470 5.32098 5.34852 5.38482 5.45501 5.51350 5.59174 5.68477 5.70979 5.82162 5.84896 5.92324 5.98031 5.99772 6.06088 6.12355 6.23662 6.25562 6.33513 6.45164 6.58168 6.70239 7.12377 7.49381 7.61369 7.95690 8.27720 8.51679 8.94719 9.20673 9.59300 11.06676 Molecular weight = 239.16amu Principal moments of inertia in cm(-1) A = 0.036643 B = 0.005471 C = 0.005330 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 763.938871 B = 5116.317616 C = 5251.594433 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.095 4.095 3 H 0.069 0.931 4 C -0.119 4.119 5 C -0.127 4.127 6 C -0.111 4.111 7 C -0.071 4.071 8 H 0.078 0.922 9 C -0.134 4.134 10 C 0.500 3.500 11 O -0.541 6.541 12 N -0.607 5.607 13 C 0.085 3.915 14 C 0.245 3.755 15 C -0.524 4.524 16 H 0.056 0.944 17 C 0.060 3.940 18 N -0.896 5.896 19 Si 0.898 3.102 20 H -0.280 1.280 21 H -0.285 1.285 22 H -0.274 1.274 23 H 0.058 0.942 24 H 0.048 0.952 25 H 0.058 0.942 26 H 0.064 0.936 27 H 0.059 0.941 28 H 0.061 0.939 29 H 0.064 0.936 30 H 0.074 0.926 31 H 0.059 0.941 32 H 0.084 0.916 33 H 0.087 0.913 34 H 0.042 0.958 35 H 0.072 0.928 36 H 0.056 0.944 37 H 0.030 0.970 38 H 0.043 0.957 39 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.691 4.740 -16.613 17.901 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.113 4.113 3 H 0.087 0.913 4 C -0.156 4.156 5 C -0.165 4.165 6 C -0.148 4.148 7 C -0.090 4.090 8 H 0.097 0.903 9 C -0.174 4.174 10 C 0.287 3.713 11 O -0.419 6.419 12 N -0.339 5.339 13 C -0.059 4.059 14 C 0.125 3.875 15 C -0.563 4.563 16 H 0.074 0.926 17 C -0.142 4.142 18 N -0.535 5.535 19 Si 0.725 3.275 20 H -0.207 1.207 21 H -0.211 1.211 22 H -0.199 1.199 23 H 0.077 0.923 24 H 0.067 0.933 25 H 0.077 0.923 26 H 0.082 0.918 27 H 0.078 0.922 28 H 0.080 0.920 29 H 0.082 0.918 30 H 0.093 0.907 31 H 0.078 0.922 32 H 0.103 0.897 33 H 0.106 0.894 34 H 0.060 0.940 35 H 0.090 0.910 36 H 0.075 0.925 37 H 0.048 0.952 38 H 0.061 0.939 39 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -3.998 4.586 -16.329 17.425 hybrid contribution -0.117 0.665 0.928 1.148 sum -4.114 5.252 -15.400 16.783 Atomic orbital electron populations 1.22003 0.95376 1.01825 1.01292 1.21808 0.95570 0.99217 0.94718 0.91261 1.22435 0.97526 0.98763 0.96893 1.22517 0.97459 0.99566 0.96943 1.22355 1.00329 0.97179 0.94970 1.21534 0.95604 0.97153 0.94738 0.90324 1.21985 0.99290 1.01073 0.95044 1.20493 0.86858 0.79180 0.84744 1.90641 1.15627 1.57618 1.77974 1.48173 1.05540 1.58492 1.21705 1.21605 0.82639 0.99913 1.01781 1.19254 0.95748 0.93208 0.79249 1.21442 1.43683 0.95645 0.95539 0.92562 1.24939 0.95168 0.95521 0.98535 1.69938 1.44191 1.17210 1.22156 0.86503 0.77629 0.81886 0.81434 1.20664 1.21085 1.19927 0.92310 0.93294 0.92305 0.91771 0.92248 0.92047 0.91769 0.90676 0.92227 0.89735 0.89432 0.93955 0.90962 0.92520 0.95222 0.93916 0.92765 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.43 7.88 37.16 0.29 -1.14 16 2 C -0.09 -1.05 3.50 -89.51 -0.31 -1.36 16 3 H 0.07 0.75 8.14 -51.93 -0.42 0.33 16 4 C -0.12 -1.20 6.36 -25.07 -0.16 -1.36 16 5 C -0.13 -1.45 6.91 -24.74 -0.17 -1.62 16 6 C -0.11 -1.59 5.43 -25.07 -0.14 -1.73 16 7 C -0.07 -1.02 2.55 -89.50 -0.23 -1.25 16 8 H 0.08 1.29 7.92 -51.93 -0.41 0.88 16 9 C -0.13 -2.00 2.44 -27.88 -0.07 -2.07 16 10 C 0.50 10.52 7.46 -10.98 -0.08 10.44 16 11 O -0.54 -13.64 14.41 5.56 0.08 -13.56 16 12 N -0.61 -13.18 2.86 -182.95 -0.52 -13.70 16 13 C 0.08 1.37 10.25 59.84 0.61 1.99 16 14 C 0.24 6.57 5.16 -5.19 -0.03 6.54 16 15 C -0.52 -15.18 9.39 -34.44 -0.32 -15.51 16 16 H 0.06 1.63 7.81 -52.49 -0.41 1.22 16 17 C 0.06 1.75 5.46 -17.82 -0.10 1.65 16 18 N -0.90 -27.06 13.29 55.43 0.74 -26.32 16 19 Si 0.90 22.18 29.54 -169.99 -5.02 17.16 16 20 H -0.28 -6.70 7.11 56.52 0.40 -6.30 16 21 H -0.29 -6.98 7.11 56.52 0.40 -6.57 16 22 H -0.27 -6.77 7.11 56.52 0.40 -6.37 16 23 H 0.06 0.57 6.62 -51.93 -0.34 0.23 16 24 H 0.05 0.41 8.14 -51.93 -0.42 -0.01 16 25 H 0.06 0.55 6.86 -51.93 -0.36 0.20 16 26 H 0.06 0.62 7.84 -51.93 -0.41 0.21 16 27 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 28 H 0.06 0.64 8.14 -51.93 -0.42 0.21 16 29 H 0.06 0.71 8.14 -51.93 -0.42 0.29 16 30 H 0.07 1.26 7.66 -51.93 -0.40 0.86 16 31 H 0.06 0.86 7.76 -51.93 -0.40 0.46 16 32 H 0.08 1.10 6.88 -51.93 -0.36 0.74 16 33 H 0.09 1.18 5.67 -51.93 -0.29 0.89 16 34 H 0.04 0.59 8.14 -51.93 -0.42 0.17 16 35 H 0.07 1.21 8.07 -51.93 -0.42 0.79 16 36 H 0.06 0.75 6.43 -51.93 -0.33 0.41 16 37 H 0.03 0.80 8.07 -51.93 -0.42 0.38 16 38 H 0.04 1.29 7.42 -51.93 -0.39 0.90 16 39 H 0.26 7.48 8.31 -40.82 -0.34 7.14 16 LS Contribution 306.35 15.07 4.62 4.62 Total: -1.00 -32.62 306.35 -7.42 -40.04 By element: Atomic # 1 Polarization: 3.78 SS G_CDS: -6.61 Total: -2.83 kcal Atomic # 6 Polarization: -4.71 SS G_CDS: -0.70 Total: -5.41 kcal Atomic # 7 Polarization: -40.23 SS G_CDS: 0.21 Total: -40.02 kcal Atomic # 8 Polarization: -13.64 SS G_CDS: 0.08 Total: -13.56 kcal Atomic # 14 Polarization: 22.18 SS G_CDS: -5.02 Total: 17.16 kcal Total LS contribution 4.62 Total: 4.62 kcal Total: -32.62 -7.42 -40.04 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000346444903.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -19.176 kcal (2) G-P(sol) polarization free energy of solvation -32.623 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -51.799 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.419 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.042 kcal (6) G-S(sol) free energy of system = (1) + (5) -59.218 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds