Wall clock time and date at job start Thu Apr 9 2020 12:09:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.09001 * 110.01833 * 2 1 4 4 C 1.54269 * 110.03028 * 121.44428 * 2 1 3 5 5 C 1.54887 * 104.19227 * 142.89258 * 4 2 1 6 6 C 1.54890 * 102.75298 * 322.05450 * 5 4 2 7 7 C 1.53873 * 110.02977 * 238.60913 * 2 1 3 8 8 H 1.08994 * 110.03497 * 121.43233 * 7 2 1 9 9 C 1.53004 * 110.03510 * 359.97438 * 7 2 1 10 10 C 1.50694 * 109.47379 * 174.99801 * 9 7 2 11 11 O 1.21281 * 120.00178 * 0.02562 * 10 9 7 12 12 N 1.34774 * 120.00087 * 180.02562 * 10 9 7 13 13 C 1.46495 * 119.99860 * 0.02562 * 12 10 9 14 14 C 1.46501 * 120.00088 * 180.02562 * 12 10 9 15 15 C 1.50699 * 109.47170 * 90.00078 * 14 12 10 16 16 H 1.07991 * 120.00028 * 359.97438 * 15 14 12 17 17 C 1.37882 * 119.99878 * 180.02562 * 15 14 12 18 18 N 1.31514 * 119.99631 * 180.02562 * 17 15 14 19 19 Si 1.86797 * 120.00110 * 359.97438 * 17 15 14 20 20 H 1.48500 * 109.46891 * 90.00147 * 19 17 15 21 21 H 1.48502 * 109.47177 * 210.00089 * 19 17 15 22 22 H 1.48504 * 109.47224 * 330.00600 * 19 17 15 23 23 H 1.09001 * 109.46801 * 181.39154 * 1 2 3 24 24 H 1.09001 * 109.46998 * 301.38750 * 1 2 3 25 25 H 1.09000 * 109.47050 * 61.39042 * 1 2 3 26 26 H 1.09003 * 110.48305 * 261.56941 * 4 2 1 27 27 H 1.08995 * 110.48795 * 24.21364 * 4 2 1 28 28 H 1.09000 * 110.75720 * 203.73674 * 5 4 2 29 29 H 1.09006 * 110.91800 * 80.44720 * 5 4 2 30 30 H 1.09001 * 110.48554 * 279.26940 * 6 5 4 31 31 H 1.09000 * 110.48996 * 156.61898 * 6 5 4 32 32 H 1.09002 * 109.47112 * 295.00379 * 9 7 2 33 33 H 1.09006 * 109.46359 * 55.00249 * 9 7 2 34 34 H 1.09002 * 109.47593 * 89.99944 * 13 12 10 35 35 H 1.09005 * 109.46978 * 210.00146 * 13 12 10 36 36 H 1.09000 * 109.47329 * 329.99275 * 13 12 10 37 37 H 1.09004 * 109.47100 * 210.00362 * 14 12 10 38 38 H 1.09007 * 109.46997 * 330.00046 * 14 12 10 39 39 H 0.97001 * 119.99476 * 179.97438 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.9032 1.0242 0.0000 4 6 2.0585 -0.7561 1.2365 5 6 3.3136 -1.5011 0.7184 6 6 2.8874 -1.9404 -0.7044 7 6 2.0571 -0.7530 -1.2341 8 1 2.6867 -0.0946 -1.8325 9 6 0.8861 -1.2665 -2.0744 10 6 1.4126 -1.8934 -3.3396 11 8 2.6068 -1.9267 -3.5485 12 7 0.5563 -2.4171 -4.2391 13 6 -0.8862 -2.3764 -3.9870 14 6 1.0682 -3.0270 -5.4688 15 6 1.3229 -4.4936 -5.2338 16 1 1.1239 -4.9278 -4.2653 17 6 1.8111 -5.2809 -6.2551 18 7 2.0329 -6.5609 -6.0501 19 14 2.1560 -4.5297 -7.9303 20 1 3.5567 -4.0385 -7.9735 21 1 1.9591 -5.5576 -8.9838 22 1 1.2264 -3.3956 -8.1651 23 1 -0.3633 -1.0274 0.0250 24 1 -0.3633 0.5352 0.8773 25 1 -0.3633 0.4921 -0.9022 26 1 2.3298 -0.0545 2.0254 27 1 1.3143 -1.4667 1.5960 28 1 3.5325 -2.3685 1.3411 29 1 4.1731 -0.8320 0.6749 30 1 2.2770 -2.8423 -0.6584 31 1 3.7636 -2.1032 -1.3320 32 1 0.3289 -2.0103 -1.5049 33 1 0.2284 -0.4349 -2.3274 34 1 -1.3014 -1.4568 -4.3995 35 1 -1.3622 -3.2347 -4.4613 36 1 -1.0684 -2.4076 -2.9128 37 1 0.3340 -2.9089 -6.2658 38 1 1.9989 -2.5381 -5.7567 39 1 2.3759 -7.1147 -6.7688 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000346444906.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 12:09:52 Heat of formation + Delta-G solvation = -76.201125 kcal Electronic energy + Delta-G solvation = -17795.605802 eV Core-core repulsion = 15122.506126 eV Total energy + Delta-G solvation = -2673.099676 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 239.163 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -41.05673 -39.20742 -36.56705 -34.72636 -32.86847 -31.78195 -30.34557 -27.51822 -26.74871 -25.74355 -24.04627 -21.66912 -20.31146 -19.21519 -19.14644 -18.04982 -17.18281 -16.73002 -16.23058 -15.96792 -15.45646 -14.75395 -14.62502 -14.47460 -14.28474 -13.68965 -13.64472 -13.32475 -13.25779 -13.09784 -12.86508 -12.67446 -12.44536 -12.03411 -11.81551 -11.76305 -11.63199 -11.54753 -11.46697 -11.36729 -11.09611 -10.84980 -10.50916 -9.35362 -8.35937 -6.40868 1.30601 1.34968 1.43591 1.87680 2.29352 2.41113 2.98501 3.61721 3.70670 3.79020 3.98549 4.34956 4.36223 4.44624 4.47727 4.54242 4.66908 4.68132 4.76205 4.78998 4.83273 4.90555 4.93226 4.97897 4.99161 5.11835 5.12248 5.20073 5.32206 5.44283 5.46312 5.47500 5.52939 5.64508 5.65745 6.23385 6.60194 6.75778 7.20566 7.49339 8.81266 Molecular weight = 239.16amu Principal moments of inertia in cm(-1) A = 0.035762 B = 0.005927 C = 0.005539 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 782.755777 B = 4723.165914 C = 5053.461907 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.086 4.086 3 H 0.080 0.920 4 C -0.113 4.113 5 C -0.124 4.124 6 C -0.118 4.118 7 C -0.071 4.071 8 H 0.056 0.944 9 C -0.118 4.118 10 C 0.489 3.511 11 O -0.593 6.593 12 N -0.613 5.613 13 C 0.077 3.923 14 C 0.222 3.778 15 C -0.536 4.536 16 H 0.026 0.974 17 C 0.009 3.991 18 N -0.946 5.946 19 Si 0.950 3.050 20 H -0.277 1.277 21 H -0.273 1.273 22 H -0.238 1.238 23 H 0.058 0.942 24 H 0.066 0.934 25 H 0.065 0.935 26 H 0.080 0.920 27 H 0.071 0.929 28 H 0.066 0.934 29 H 0.067 0.933 30 H 0.045 0.955 31 H 0.034 0.966 32 H 0.105 0.895 33 H 0.123 0.877 34 H 0.080 0.920 35 H 0.062 0.938 36 H 0.089 0.911 37 H 0.049 0.951 38 H 0.016 0.984 39 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.929 15.563 11.997 20.837 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.105 4.105 3 H 0.098 0.902 4 C -0.151 4.151 5 C -0.161 4.161 6 C -0.156 4.156 7 C -0.090 4.090 8 H 0.075 0.925 9 C -0.158 4.158 10 C 0.279 3.721 11 O -0.474 6.474 12 N -0.344 5.344 13 C -0.065 4.065 14 C 0.100 3.900 15 C -0.574 4.574 16 H 0.044 0.956 17 C -0.188 4.188 18 N -0.587 5.587 19 Si 0.772 3.228 20 H -0.203 1.203 21 H -0.198 1.198 22 H -0.161 1.161 23 H 0.077 0.923 24 H 0.085 0.915 25 H 0.084 0.916 26 H 0.099 0.901 27 H 0.089 0.911 28 H 0.085 0.915 29 H 0.085 0.915 30 H 0.064 0.936 31 H 0.053 0.947 32 H 0.123 0.877 33 H 0.141 0.859 34 H 0.098 0.902 35 H 0.081 0.919 36 H 0.108 0.892 37 H 0.067 0.933 38 H 0.034 0.966 39 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -6.305 15.387 11.793 20.386 hybrid contribution 0.688 -0.751 -1.033 1.451 sum -5.617 14.636 10.760 19.015 Atomic orbital electron populations 1.22018 0.93659 1.02319 1.02551 1.21773 0.96936 0.99013 0.92776 0.90180 1.22440 0.96491 0.99005 0.97124 1.22503 0.98646 1.00159 0.94802 1.22341 0.98997 0.97505 0.96748 1.21546 0.95005 0.96455 0.96029 0.92493 1.22028 0.99936 1.02027 0.91773 1.21676 0.86123 0.78172 0.86100 1.90615 1.17977 1.60357 1.78495 1.48025 1.08396 1.57074 1.20923 1.21960 0.78553 1.02812 1.03152 1.19304 0.94949 0.91335 0.84435 1.21571 1.43946 0.93966 0.97938 0.95571 1.25882 0.94321 0.95057 1.03575 1.70056 1.46625 1.07079 1.34893 0.85686 0.79510 0.79267 0.78293 1.20313 1.19808 1.16109 0.92282 0.91482 0.91584 0.90115 0.91056 0.91502 0.91457 0.93599 0.94694 0.87703 0.85924 0.90168 0.91862 0.89197 0.93328 0.96609 0.92260 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.14 7.88 71.98 0.57 -1.57 16 2 C -0.09 -1.62 3.50 -10.07 -0.04 -1.65 16 3 H 0.08 1.36 8.14 -2.39 -0.02 1.35 16 4 C -0.11 -2.03 6.36 31.67 0.20 -1.83 16 5 C -0.12 -2.87 6.91 31.88 0.22 -2.65 16 6 C -0.12 -3.73 5.43 31.67 0.17 -3.55 16 7 C -0.07 -1.95 2.55 -10.07 -0.03 -1.97 16 8 H 0.06 1.78 7.92 -2.39 -0.02 1.76 16 9 C -0.12 -3.24 2.43 29.85 0.07 -3.17 16 10 C 0.49 20.14 7.46 87.66 0.65 20.80 16 11 O -0.59 -30.44 14.40 -3.03 -0.04 -30.48 16 12 N -0.61 -25.38 2.86 -851.13 -2.43 -27.81 16 13 C 0.08 2.21 10.24 127.77 1.31 3.51 16 14 C 0.22 11.16 4.23 85.63 0.36 11.52 16 15 C -0.54 -32.41 9.94 25.60 0.25 -32.15 16 16 H 0.03 1.77 8.06 -2.92 -0.02 1.74 16 17 C 0.01 0.57 5.47 84.66 0.46 1.03 16 18 N -0.95 -61.02 13.96 21.45 0.30 -60.72 16 19 Si 0.95 45.46 27.47 68.60 1.88 47.34 16 20 H -0.28 -13.39 7.11 99.48 0.71 -12.68 16 21 H -0.27 -12.44 7.11 99.48 0.71 -11.74 16 22 H -0.24 -10.22 6.54 99.48 0.65 -9.57 16 23 H 0.06 0.87 6.85 -2.39 -0.02 0.86 16 24 H 0.07 0.78 8.14 -2.39 -0.02 0.76 16 25 H 0.07 0.86 6.62 -2.39 -0.02 0.84 16 26 H 0.08 1.16 8.14 -2.39 -0.02 1.14 16 27 H 0.07 1.21 7.84 -2.39 -0.02 1.20 16 28 H 0.07 1.47 8.14 -2.39 -0.02 1.45 16 29 H 0.07 1.50 8.14 -2.38 -0.02 1.48 16 30 H 0.05 1.55 7.76 -2.39 -0.02 1.53 16 31 H 0.03 1.34 7.66 -2.39 -0.02 1.32 16 32 H 0.10 2.57 6.17 -2.39 -0.01 2.56 16 33 H 0.12 2.51 6.39 -2.38 -0.02 2.49 16 34 H 0.08 1.74 8.14 -2.39 -0.02 1.72 16 35 H 0.06 1.95 8.07 -2.38 -0.02 1.93 16 36 H 0.09 2.01 6.44 -2.39 -0.02 2.00 16 37 H 0.05 2.23 7.13 -2.38 -0.02 2.21 16 38 H 0.02 0.86 6.85 -2.38 -0.02 0.84 16 39 H 0.27 16.04 8.31 -92.71 -0.77 15.27 16 Total: -1.00 -77.75 302.74 4.87 -72.88 By element: Atomic # 1 Polarization: 9.53 SS G_CDS: 0.95 Total: 10.48 kcal Atomic # 6 Polarization: -15.90 SS G_CDS: 4.21 Total: -11.68 kcal Atomic # 7 Polarization: -86.40 SS G_CDS: -2.13 Total: -88.53 kcal Atomic # 8 Polarization: -30.44 SS G_CDS: -0.04 Total: -30.48 kcal Atomic # 14 Polarization: 45.46 SS G_CDS: 1.88 Total: 47.34 kcal Total: -77.75 4.87 -72.88 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000346444906.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -3.323 kcal (2) G-P(sol) polarization free energy of solvation -77.750 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -81.074 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.872 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.878 kcal (6) G-S(sol) free energy of system = (1) + (5) -76.201 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds